EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000021431 (Gene tree)
Gene ID: 67797
Gene Symbol: Snrnp48
Alias: 1110050F08Rik|6530403A03Rik
Full Name: small nuclear ribonucleoprotein 48 (U11/U12)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 22728 bases
Position: chr13:38204938-38227665
Accession: 1915047
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000136202	zf-U11-48K	PF05253.12	9.9e-10	1	1
ENSMUSP00000089230	zf-U11-48K	PF05253.12	1.4e-09	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000223893	-	382	-	-	- (aa)	-	-
ENSMUST00000178564	-	847	-	ENSMUSP00000136202	274 (aa)	-	J3QMA8
ENSMUST00000223557	-	871	-	-	- (aa)	-	-
ENSMUST00000224192	-	594	-	-	- (aa)	-	-
ENSMUST00000091641	-	1785	-	ENSMUSP00000089230	337 (aa)	-	Q9D361
ENSMUST00000223680	-	6689	-	-	- (aa)	-	-
ENSMUST00000223814	-	3740	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000021431's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000021431's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000021431	Snrnp48	100	85.841	ENSG00000168566	SNRNP48	100	86.726	Homo_sapiens
ENSMUSG00000021431	Snrnp48	82	47.535	ENSAPOG00000021430	snrnp48	96	43.440	Acanthochromis_polyacanthus
ENSMUSG00000021431	Snrnp48	99	84.438	ENSAMEG00000017349	SNRNP48	100	84.438	Ailuropoda_melanoleuca
ENSMUSG00000021431	Snrnp48	89	44.371	ENSACIG00000002032	snrnp48	96	41.667	Amphilophus_citrinellus
ENSMUSG00000021431	Snrnp48	82	47.535	ENSAOCG00000010562	snrnp48	96	43.804	Amphiprion_ocellaris
ENSMUSG00000021431	Snrnp48	82	47.518	ENSAPEG00000003231	snrnp48	96	43.768	Amphiprion_percula
ENSMUSG00000021431	Snrnp48	82	48.084	ENSATEG00000020210	snrnp48	84	47.797	Anabas_testudineus
ENSMUSG00000021431	Snrnp48	82	65.278	ENSACAG00000002811	SNRNP48	89	65.278	Anolis_carolinensis
ENSMUSG00000021431	Snrnp48	100	85.546	ENSANAG00000033538	SNRNP48	100	86.431	Aotus_nancymaae
ENSMUSG00000021431	Snrnp48	93	45.963	ENSAMXG00000015309	snrnp48	97	44.543	Astyanax_mexicanus
ENSMUSG00000021431	Snrnp48	100	81.471	ENSBTAG00000001123	SNRNP48	100	82.647	Bos_taurus
ENSMUSG00000021431	Snrnp48	100	86.136	ENSCJAG00000021330	SNRNP48	100	87.021	Callithrix_jacchus
ENSMUSG00000021431	Snrnp48	99	86.607	ENSCAFG00000009574	SNRNP48	83	86.607	Canis_familiaris
ENSMUSG00000021431	Snrnp48	99	86.905	ENSCAFG00020013203	SNRNP48	99	86.905	Canis_lupus_dingo
ENSMUSG00000021431	Snrnp48	100	83.235	ENSCHIG00000015216	SNRNP48	100	84.412	Capra_hircus
ENSMUSG00000021431	Snrnp48	100	85.251	ENSTSYG00000000698	SNRNP48	100	86.136	Carlito_syrichta
ENSMUSG00000021431	Snrnp48	91	82.085	ENSCAPG00000006768	SNRNP48	100	82.085	Cavia_aperea
ENSMUSG00000021431	Snrnp48	100	85.251	ENSCPOG00000007910	SNRNP48	100	85.251	Cavia_porcellus
ENSMUSG00000021431	Snrnp48	100	84.956	ENSCCAG00000035652	SNRNP48	100	85.841	Cebus_capucinus
ENSMUSG00000021431	Snrnp48	100	85.251	ENSCATG00000033947	SNRNP48	100	86.136	Cercocebus_atys
ENSMUSG00000021431	Snrnp48	100	85.546	ENSCLAG00000003765	SNRNP48	100	86.431	Chinchilla_lanigera
ENSMUSG00000021431	Snrnp48	100	85.841	ENSCSAG00000007409	SNRNP48	100	86.726	Chlorocebus_sabaeus
ENSMUSG00000021431	Snrnp48	84	64.120	ENSCPBG00000019146	SNRNP48	91	64.120	Chrysemys_picta_bellii
ENSMUSG00000021431	Snrnp48	100	85.841	ENSCANG00000030017	SNRNP48	100	86.726	Colobus_angolensis_palliatus
ENSMUSG00000021431	Snrnp48	100	93.769	ENSCGRG00001001076	-	100	93.769	Cricetulus_griseus_chok1gshd
ENSMUSG00000021431	Snrnp48	99	73.874	ENSCGRG00001008805	-	95	72.673	Cricetulus_griseus_chok1gshd
ENSMUSG00000021431	Snrnp48	100	93.769	ENSCGRG00000007781	Snrnp48	100	93.769	Cricetulus_griseus_crigri
ENSMUSG00000021431	Snrnp48	75	48.438	ENSCSEG00000000722	snrnp48	70	48.438	Cynoglossus_semilaevis
ENSMUSG00000021431	Snrnp48	96	44.611	ENSCVAG00000019829	snrnp48	62	50.407	Cyprinodon_variegatus
ENSMUSG00000021431	Snrnp48	82	45.070	ENSDARG00000039989	snrnp48	96	42.687	Danio_rerio
ENSMUSG00000021431	Snrnp48	100	85.000	ENSDNOG00000014978	SNRNP48	100	85.000	Dasypus_novemcinctus
ENSMUSG00000021431	Snrnp48	99	85.841	ENSDORG00000015140	Snrnp48	99	85.841	Dipodomys_ordii
ENSMUSG00000021431	Snrnp48	68	35.204	ENSEBUG00000016376	-	89	34.247	Eptatretus_burgeri
ENSMUSG00000021431	Snrnp48	99	87.278	ENSEASG00005012021	SNRNP48	99	87.278	Equus_asinus_asinus
ENSMUSG00000021431	Snrnp48	100	87.906	ENSECAG00000026937	SNRNP48	100	87.906	Equus_caballus
ENSMUSG00000021431	Snrnp48	100	78.000	ENSEEUG00000015437	SNRNP48	99	65.782	Erinaceus_europaeus
ENSMUSG00000021431	Snrnp48	88	47.386	ENSELUG00000009766	snrnp48	78	48.239	Esox_lucius
ENSMUSG00000021431	Snrnp48	100	87.316	ENSFCAG00000018853	SNRNP48	100	87.316	Felis_catus
ENSMUSG00000021431	Snrnp48	83	62.329	ENSFALG00000007797	SNRNP48	93	63.014	Ficedula_albicollis
ENSMUSG00000021431	Snrnp48	99	83.432	ENSFDAG00000009231	SNRNP48	99	85.503	Fukomys_damarensis
ENSMUSG00000021431	Snrnp48	59	55.941	ENSFHEG00000014647	snrnp48	97	46.333	Fundulus_heteroclitus
ENSMUSG00000021431	Snrnp48	73	47.177	ENSGMOG00000018599	-	77	47.244	Gadus_morhua
ENSMUSG00000021431	Snrnp48	76	64.906	ENSGALG00000013005	SNRNP48	90	64.906	Gallus_gallus
ENSMUSG00000021431	Snrnp48	95	42.059	ENSGAFG00000021639	snrnp48	94	43.529	Gambusia_affinis
ENSMUSG00000021431	Snrnp48	74	49.004	ENSGACG00000017756	-	96	44.985	Gasterosteus_aculeatus
ENSMUSG00000021431	Snrnp48	84	63.000	ENSGAGG00000000865	SNRNP48	97	63.000	Gopherus_agassizii
ENSMUSG00000021431	Snrnp48	100	85.841	ENSGGOG00000013220	SNRNP48	100	86.726	Gorilla_gorilla
ENSMUSG00000021431	Snrnp48	75	47.656	ENSHBUG00000017066	snrnp48	95	42.105	Haplochromis_burtoni
ENSMUSG00000021431	Snrnp48	99	85.207	ENSHGLG00000015241	SNRNP48	99	86.095	Heterocephalus_glaber_female
ENSMUSG00000021431	Snrnp48	99	85.207	ENSHGLG00100010027	SNRNP48	99	86.095	Heterocephalus_glaber_male
ENSMUSG00000021431	Snrnp48	72	47.154	ENSHCOG00000014066	snrnp48	92	41.399	Hippocampus_comes
ENSMUSG00000021431	Snrnp48	100	89.381	ENSSTOG00000014635	SNRNP48	100	90.265	Ictidomys_tridecemlineatus
ENSMUSG00000021431	Snrnp48	100	85.546	ENSJJAG00000011495	Snrnp48	100	85.546	Jaculus_jaculus
ENSMUSG00000021431	Snrnp48	91	44.805	ENSKMAG00000016514	snrnp48	94	42.353	Kryptolebias_marmoratus
ENSMUSG00000021431	Snrnp48	75	48.235	ENSLBEG00000026249	snrnp48	95	42.857	Labrus_bergylta
ENSMUSG00000021431	Snrnp48	98	52.537	ENSLACG00000003958	SNRNP48	99	51.603	Latimeria_chalumnae
ENSMUSG00000021431	Snrnp48	84	51.211	ENSLOCG00000004187	snrnp48	95	48.961	Lepisosteus_oculatus
ENSMUSG00000021431	Snrnp48	100	83.481	ENSLAFG00000011152	SNRNP48	100	83.481	Loxodonta_africana
ENSMUSG00000021431	Snrnp48	100	86.136	ENSMFAG00000045216	SNRNP48	100	87.021	Macaca_fascicularis
ENSMUSG00000021431	Snrnp48	100	86.136	ENSMMUG00000014785	SNRNP48	100	87.021	Macaca_mulatta
ENSMUSG00000021431	Snrnp48	100	86.136	ENSMNEG00000042269	SNRNP48	100	87.021	Macaca_nemestrina
ENSMUSG00000021431	Snrnp48	100	86.136	ENSMLEG00000034004	SNRNP48	100	87.021	Mandrillus_leucophaeus
ENSMUSG00000021431	Snrnp48	75	48.627	ENSMAMG00000018673	snrnp48	83	43.440	Mastacembelus_armatus
ENSMUSG00000021431	Snrnp48	82	63.946	ENSMGAG00000006037	SNRNP48	99	63.356	Meleagris_gallopavo
ENSMUSG00000021431	Snrnp48	100	93.769	ENSMAUG00000011944	Snrnp48	100	93.769	Mesocricetus_auratus
ENSMUSG00000021431	Snrnp48	100	86.431	ENSMICG00000012497	SNRNP48	100	87.316	Microcebus_murinus
ENSMUSG00000021431	Snrnp48	100	93.472	ENSMOCG00000015555	Snrnp48	100	93.472	Microtus_ochrogaster
ENSMUSG00000021431	Snrnp48	54	52.432	ENSMMOG00000003072	-	58	52.432	Mola_mola
ENSMUSG00000021431	Snrnp48	99	68.661	ENSMODG00000009996	SNRNP48	95	68.946	Monodelphis_domestica
ENSMUSG00000021431	Snrnp48	75	48.828	ENSMALG00000005725	snrnp48	82	47.183	Monopterus_albus
ENSMUSG00000021431	Snrnp48	100	98.516	MGP_CAROLIEiJ_G0018441	Snrnp48	100	98.516	Mus_caroli
ENSMUSG00000021431	Snrnp48	100	97.626	MGP_PahariEiJ_G0019509	Snrnp48	100	97.626	Mus_pahari
ENSMUSG00000021431	Snrnp48	100	99.110	MGP_SPRETEiJ_G0019321	Snrnp48	100	99.110	Mus_spretus
ENSMUSG00000021431	Snrnp48	99	89.645	ENSNGAG00000004849	Snrnp48	99	89.645	Nannospalax_galili
ENSMUSG00000021431	Snrnp48	75	47.266	ENSNBRG00000012127	snrnp48	95	41.813	Neolamprologus_brichardi
ENSMUSG00000021431	Snrnp48	100	86.136	ENSNLEG00000011667	SNRNP48	100	87.021	Nomascus_leucogenys
ENSMUSG00000021431	Snrnp48	95	78.638	ENSOPRG00000015471	SNRNP48	100	78.019	Ochotona_princeps
ENSMUSG00000021431	Snrnp48	95	44.444	ENSONIG00000001520	snrnp48	95	41.311	Oreochromis_niloticus
ENSMUSG00000021431	Snrnp48	62	59.140	ENSOANG00000019888	-	100	62.981	Ornithorhynchus_anatinus
ENSMUSG00000021431	Snrnp48	85	86.713	ENSOCUG00000005168	SNRNP48	100	86.513	Oryctolagus_cuniculus
ENSMUSG00000021431	Snrnp48	89	47.078	ENSORLG00000015654	snrnp48	94	44.798	Oryzias_latipes
ENSMUSG00000021431	Snrnp48	89	46.429	ENSORLG00020015976	snrnp48	82	44.282	Oryzias_latipes_hni
ENSMUSG00000021431	Snrnp48	89	47.403	ENSORLG00015022379	snrnp48	81	45.376	Oryzias_latipes_hsok
ENSMUSG00000021431	Snrnp48	96	43.807	ENSOMEG00000022007	snrnp48	95	43.188	Oryzias_melastigma
ENSMUSG00000021431	Snrnp48	92	84.516	ENSOGAG00000005275	SNRNP48	98	83.851	Otolemur_garnettii
ENSMUSG00000021431	Snrnp48	85	84.321	ENSOARG00000017319	SNRNP48	100	84.321	Ovis_aries
ENSMUSG00000021431	Snrnp48	100	86.136	ENSPPAG00000032873	SNRNP48	100	87.021	Pan_paniscus
ENSMUSG00000021431	Snrnp48	100	87.021	ENSPPRG00000004283	SNRNP48	100	87.021	Panthera_pardus
ENSMUSG00000021431	Snrnp48	85	87.108	ENSPTIG00000013502	SNRNP48	100	87.108	Panthera_tigris_altaica
ENSMUSG00000021431	Snrnp48	100	86.136	ENSPTRG00000017703	SNRNP48	100	87.021	Pan_troglodytes
ENSMUSG00000021431	Snrnp48	100	86.136	ENSPANG00000000771	SNRNP48	100	87.021	Papio_anubis
ENSMUSG00000021431	Snrnp48	94	46.356	ENSPKIG00000013703	snrnp48	67	46.828	Paramormyrops_kingsleyae
ENSMUSG00000021431	Snrnp48	84	63.787	ENSPSIG00000002213	SNRNP48	94	63.787	Pelodiscus_sinensis
ENSMUSG00000021431	Snrnp48	74	47.860	ENSPMGG00000008120	snrnp48	90	47.860	Periophthalmus_magnuspinnatus
ENSMUSG00000021431	Snrnp48	100	94.065	ENSPEMG00000008872	Snrnp48	100	94.065	Peromyscus_maniculatus_bairdii
ENSMUSG00000021431	Snrnp48	75	50.196	ENSPFOG00000003578	snrnp48	93	44.838	Poecilia_formosa
ENSMUSG00000021431	Snrnp48	69	49.145	ENSPLAG00000002290	snrnp48	79	49.145	Poecilia_latipinna
ENSMUSG00000021431	Snrnp48	75	49.412	ENSPMEG00000018033	snrnp48	93	44.248	Poecilia_mexicana
ENSMUSG00000021431	Snrnp48	74	49.402	ENSPREG00000018541	snrnp48	93	44.248	Poecilia_reticulata
ENSMUSG00000021431	Snrnp48	100	84.661	ENSPPYG00000016209	SNRNP48	100	85.546	Pongo_abelii
ENSMUSG00000021431	Snrnp48	74	82.143	ENSPCAG00000011991	SNRNP48	99	68.539	Procavia_capensis
ENSMUSG00000021431	Snrnp48	100	84.956	ENSPVAG00000002854	SNRNP48	100	84.956	Pteropus_vampyrus
ENSMUSG00000021431	Snrnp48	75	47.656	ENSPNYG00000015399	snrnp48	90	45.329	Pundamilia_nyererei
ENSMUSG00000021431	Snrnp48	100	95.252	ENSRNOG00000013756	Snrnp48	100	95.252	Rattus_norvegicus
ENSMUSG00000021431	Snrnp48	92	86.452	ENSRBIG00000043856	SNRNP48	98	86.452	Rhinopithecus_bieti
ENSMUSG00000021431	Snrnp48	100	85.841	ENSRROG00000043229	SNRNP48	100	86.726	Rhinopithecus_roxellana
ENSMUSG00000021431	Snrnp48	100	86.136	ENSSBOG00000019486	SNRNP48	100	87.021	Saimiri_boliviensis_boliviensis
ENSMUSG00000021431	Snrnp48	98	70.058	ENSSHAG00000014483	SNRNP48	99	70.058	Sarcophilus_harrisii
ENSMUSG00000021431	Snrnp48	74	51.562	ENSSFOG00015006610	snrnp48	70	47.826	Scleropages_formosus
ENSMUSG00000021431	Snrnp48	85	45.833	ENSSDUG00000014953	snrnp48	92	43.425	Seriola_dumerili
ENSMUSG00000021431	Snrnp48	85	45.139	ENSSLDG00000005989	snrnp48	92	43.373	Seriola_lalandi_dorsalis
ENSMUSG00000021431	Snrnp48	84	64.094	ENSSPUG00000006257	SNRNP48	85	65.772	Sphenodon_punctatus
ENSMUSG00000021431	Snrnp48	96	42.643	ENSSPAG00000006454	snrnp48	93	43.491	Stegastes_partitus
ENSMUSG00000021431	Snrnp48	83	61.433	ENSTGUG00000007575	SNRNP48	93	61.433	Taeniopygia_guttata
ENSMUSG00000021431	Snrnp48	74	49.801	ENSTRUG00000007031	snrnp48	92	46.037	Takifugu_rubripes
ENSMUSG00000021431	Snrnp48	76	46.512	ENSTNIG00000012977	-	76	46.512	Tetraodon_nigroviridis
ENSMUSG00000021431	Snrnp48	100	80.769	ENSTBEG00000015620	SNRNP48	100	71.302	Tupaia_belangeri
ENSMUSG00000021431	Snrnp48	100	86.431	ENSTTRG00000016715	SNRNP48	100	86.431	Tursiops_truncatus
ENSMUSG00000021431	Snrnp48	100	86.726	ENSUAMG00000003690	SNRNP48	100	87.611	Ursus_americanus
ENSMUSG00000021431	Snrnp48	85	82.578	ENSVPAG00000003557	SNRNP48	100	82.578	Vicugna_pacos
ENSMUSG00000021431	Snrnp48	99	87.202	ENSVVUG00000004996	SNRNP48	99	87.202	Vulpes_vulpes
ENSMUSG00000021431	Snrnp48	86	53.512	ENSXETG00000020447	snrnp48	97	51.929	Xenopus_tropicalis
ENSMUSG00000021431	Snrnp48	69	48.511	ENSXCOG00000004478	snrnp48	71	48.511	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	-	ISO	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function