EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000225366	-	3331	-	-	- (aa)	-	-
ENSMUST00000225066	-	645	-	-	- (aa)	-	-
ENSMUST00000224517	-	787	-	-	- (aa)	-	-
ENSMUST00000021940	-	4315	-	ENSMUSP00000021940	358 (aa)	-	Q9DBH5

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04141	Protein processing in endoplasmic reticulum	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000021484	Lman2	100	94.413	ENSG00000169223	LMAN2	100	99.476	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000139	Golgi membrane	21873635.	IBA	Component
GO:0005537	mannose binding	21873635.	IBA	Function
GO:0005537	mannose binding	-	ISO	Function
GO:0005615	extracellular space	-	ISO	Component
GO:0005789	endoplasmic reticulum membrane	21873635.	IBA	Component
GO:0005793	endoplasmic reticulum-Golgi intermediate compartment	21873635.	IBA	Component
GO:0005793	endoplasmic reticulum-Golgi intermediate compartment	-	ISO	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0005887	integral component of plasma membrane	-	ISO	Component
GO:0006888	ER to Golgi vesicle-mediated transport	21873635.	IBA	Process
GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	-	ISO	Process
GO:0007029	endoplasmic reticulum organization	21873635.	IBA	Process
GO:0007030	Golgi organization	21873635.	IBA	Process
GO:0009986	cell surface	-	ISO	Component
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0030134	COPII-coated ER to Golgi transport vesicle	21873635.	IBA	Component
GO:0030246	carbohydrate binding	-	ISO	Function
GO:0031072	heat shock protein binding	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0050766	positive regulation of phagocytosis	22016386.	IMP	Process
GO:0050766	positive regulation of phagocytosis	-	ISO	Process