EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000021488 (Gene tree)
Gene ID: 18193
Gene Symbol: Nsd1
Alias: KMT3B
Full Name: nuclear receptor-binding SET-domain protein 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 108544
Position: chr13: 55209782-55318325
Accession: 1276545
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000224693	-	852	-	ENSMUSP00000152939	158 (aa)	-	A0A286YDS9
ENSMUST00000224918	-	1001	-	ENSMUSP00000153511	158 (aa)	-	A0A286YDS9
ENSMUST00000225194	-	1770	-	-	- (aa)	-	-
ENSMUST00000224973	-	9905	XM_011244496	ENSMUSP00000153677	2588 (aa)	XP_011242798	A0A286YE36
ENSMUST00000099490	-	12784	XM_006517134	ENSMUSP00000097089	2691 (aa)	XP_006517197	E9QAE4
ENSMUST00000225405	-	772	-	-	- (aa)	-	-
ENSMUST00000223894	-	426	-	-	- (aa)	-	-
ENSMUST00000225169	-	339	-	ENSMUSP00000153503	30 (aa)	-	A0A286YDN7
ENSMUST00000224338	-	2013	-	-	- (aa)	-	-
ENSMUST00000225982	-	1822	-	-	- (aa)	-	-
ENSMUST00000224156	-	1149	-	ENSMUSP00000153366	158 (aa)	-	A0A286YDS9

Gene Model

Click here to download ENSMUSG00000021488's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00310	Lysine degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000021488's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	9628876.	IDA	Process
GO:0000414	regulation of histone H3-K36 methylation	20837538.	ISO	Process
GO:0000785	chromatin	21873635.	IBA	Component
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	20837538.	ISO	Function
GO:0001702	gastrulation with mouth forming second	12805229.	IMP	Process
GO:0003682	chromatin binding	15522233.	IDA	Function
GO:0003712	transcription coregulator activity	9628876.	IDA	Function
GO:0003712	transcription coregulator activity	-	ISO	Function
GO:0003714	transcription corepressor activity	9628876.	IDA	Function
GO:0005515	protein binding	15169884.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	15169884.	IC	Component
GO:0005634	nucleus	18157086.	IDA	Component
GO:0005694	chromosome	-	IEA	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0006355	regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0006355	regulation of transcription, DNA-templated	9628876.	TAS	Process
GO:0007275	multicellular organism development	-	IEA	Process
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0008270	zinc ion binding	-	ISO	Function
GO:0016571	histone methylation	12805229.	IDA	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0018024	histone-lysine N-methyltransferase activity	-	IEA	Function
GO:0030331	estrogen receptor binding	9628876.	IPI	Function
GO:0032259	methylation	-	IEA	Process
GO:0033135	regulation of peptidyl-serine phosphorylation	20837538.	ISO	Process
GO:0035097	histone methyltransferase complex	12805229.	IC	Component
GO:0042054	histone methyltransferase activity	12805229.	IDA	Function
GO:0042799	histone methyltransferase activity (H4-K20 specific)	12805229.	IDA	Function
GO:0042974	retinoic acid receptor binding	9628876.	IPI	Function
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0046965	retinoid X receptor binding	9628876.	IPI	Function
GO:0046966	thyroid hormone receptor binding	9628876.	IPI	Function
GO:0046975	histone methyltransferase activity (H3-K36 specific)	21873635.	IBA	Function
GO:0046975	histone methyltransferase activity (H3-K36 specific)	12805229.	IDA	Function
GO:0046975	histone methyltransferase activity (H3-K36 specific)	-	ISO	Function
GO:0050681	androgen receptor binding	-	ISO	Function
GO:1903025	regulation of RNA polymerase II regulatory region sequence-specific DNA binding	20837538.	ISO	Process