EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000021494 (Gene tree)
Gene ID
72935
Gene Symbol
Ddx41
Alias
2900024F02Rik
Full Name
DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
6249 bases
Position
chr13:55530410-55536658
Accession
1920185
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000021956DEADPF00270.295.2e-4411
ENSMUSP00000153348DEADPF00270.295.4e-4411
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000224686-835--- (aa)--
ENSMUST00000225783-710--- (aa)--
ENSMUST00000224125-705--- (aa)--
ENSMUST00000021956-2205-ENSMUSP00000021956622 (aa)-Q91VN6
ENSMUST00000224765-2199XM_017315611ENSMUSP00000153348633 (aa)XP_017171100A0A1S6GWJ4
Gene Model
Click here to download ENSMUSG00000021494's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000021494's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000021494Ddx416531.026ENSMUSG00000020677Ddx526830.733
ENSMUSG00000021494Ddx415535.440ENSMUSG00000029389Ddx555935.635
ENSMUSG00000021494Ddx415933.154ENSMUSG00000025580Eif4a38633.154
ENSMUSG00000021494Ddx415230.214ENSMUSG00000026806Ddx315330.214
ENSMUSG00000021494Ddx415732.022ENSMUSG00000032097Ddx67131.742
ENSMUSG00000021494Ddx416339.756ENSMUSG00000000787Ddx3x6538.952
ENSMUSG00000021494Ddx415835.556ENSMUSG00000030204Ddx478533.333
ENSMUSG00000021494Ddx416739.269ENSMUSG00000039224D1Pas16539.269
ENSMUSG00000021494Ddx415933.154ENSMUSG00000107906Gm55808633.154
ENSMUSG00000021494Ddx416132.808ENSMUSG00000094973Gm89948832.808
ENSMUSG00000021494Ddx416232.921ENSMUSG00000057788Ddx498032.673
ENSMUSG00000021494Ddx416438.519ENSMUSG00000021758Ddx45738.519
ENSMUSG00000021494Ddx416439.163ENSMUSG00000020719Ddx58138.235
ENSMUSG00000021494Ddx417537.400ENSMUSG00000003360Ddx235240.139
ENSMUSG00000021494Ddx416734.762ENSMUSG00000026404Ddx596434.762
ENSMUSG00000021494Ddx416539.952ENSMUSG00000055065Ddx178239.535
ENSMUSG00000021494Ddx416537.232ENSMUSG00000070291Ddx436436.941
ENSMUSG00000021494Ddx416130.390ENSMUSG00000059796Eif4a19130.390
ENSMUSG00000021494Ddx416130.909ENSMUSG00000022884Eif4a29130.909
ENSMUSG00000021494Ddx416738.391ENSMUSG00000069045Ddx3y6837.149
ENSMUSG00000021494Ddx415434.111ENSMUSG00000001674Ddx185034.111
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000021494Ddx4110098.875ENSG00000183258DDX4110098.875Homo_sapiens
ENSMUSG00000021494Ddx4110086.013ENSAPOG00000000935DDX419986.013Acanthochromis_polyacanthus
ENSMUSG00000021494Ddx4110098.553ENSAMEG00000018051DDX4110098.553Ailuropoda_melanoleuca
ENSMUSG00000021494Ddx419588.721ENSACIG00000008618DDX419988.814Amphilophus_citrinellus
ENSMUSG00000021494Ddx4110085.852ENSAOCG00000011755DDX4110085.852Amphiprion_ocellaris
ENSMUSG00000021494Ddx4110086.013ENSAPEG00000013433DDX4110086.013Amphiprion_percula
ENSMUSG00000021494Ddx4110086.174ENSATEG00000003317DDX4110086.174Anabas_testudineus
ENSMUSG00000021494Ddx418486.502ENSAPLG00000015985-10086.502Anas_platyrhynchos
ENSMUSG00000021494Ddx419990.997ENSACAG00000005778DDX419990.997Anolis_carolinensis
ENSMUSG00000021494Ddx4110099.035ENSANAG00000035879DDX4110099.035Aotus_nancymaae
ENSMUSG00000021494Ddx419787.171ENSACLG00000003778DDX4110085.370Astatotilapia_calliptera
ENSMUSG00000021494Ddx419885.948ENSAMXG00000002956DDX419985.948Astyanax_mexicanus
ENSMUSG00000021494Ddx4110098.714ENSBTAG00000015187DDX4110098.714Bos_taurus
ENSMUSG00000021494Ddx418560.113WBGene00019245sacy-18459.662Caenorhabditis_elegans
ENSMUSG00000021494Ddx4110099.196ENSCJAG00000006595DDX4110099.196Callithrix_jacchus
ENSMUSG00000021494Ddx4110098.875ENSCAFG00000016304DDX4110098.875Canis_familiaris
ENSMUSG00000021494Ddx4110098.875ENSCAFG00020012019DDX4110098.875Canis_lupus_dingo
ENSMUSG00000021494Ddx4110098.553ENSCHIG00000009756DDX4110098.553Capra_hircus
ENSMUSG00000021494Ddx4110095.338ENSTSYG00000033318DDX4110095.338Carlito_syrichta
ENSMUSG00000021494Ddx4184100.000ENSCAPG00000011375DDX41100100.000Cavia_aperea
ENSMUSG00000021494Ddx4110098.071ENSCPOG00000008770DDX4110098.071Cavia_porcellus
ENSMUSG00000021494Ddx4110099.035ENSCCAG00000036188DDX4110099.035Cebus_capucinus
ENSMUSG00000021494Ddx4110098.714ENSCATG00000013983DDX4110098.714Cercocebus_atys
ENSMUSG00000021494Ddx4110098.714ENSCLAG00000015404DDX4110098.714Chinchilla_lanigera
ENSMUSG00000021494Ddx4110098.714ENSCSAG00000008742DDX4110098.714Chlorocebus_sabaeus
ENSMUSG00000021494Ddx419395.494ENSCPBG00000022192DDX419995.583Chrysemys_picta_bellii
ENSMUSG00000021494Ddx419564.959ENSCING00000008215zf(cchc)-208768.877Ciona_intestinalis
ENSMUSG00000021494Ddx4110098.714ENSCANG00000006524DDX4110098.101Colobus_angolensis_palliatus
ENSMUSG00000021494Ddx4110098.875ENSCGRG00001017112Ddx419998.571Cricetulus_griseus_chok1gshd
ENSMUSG00000021494Ddx4110098.875ENSCGRG00000007688Ddx4110098.875Cricetulus_griseus_crigri
ENSMUSG00000021494Ddx419784.452ENSCSEG00000013051DDX419885.403Cynoglossus_semilaevis
ENSMUSG00000021494Ddx419978.502ENSCVAG00000014462DDX419978.664Cyprinodon_variegatus
ENSMUSG00000021494Ddx4110098.392ENSDNOG00000046583DDX4110098.392Dasypus_novemcinctus
ENSMUSG00000021494Ddx4110098.875ENSDORG00000010781Ddx4110098.875Dipodomys_ordii
ENSMUSG00000021494Ddx419666.557FBgn0015331abs9666.499Drosophila_melanogaster
ENSMUSG00000021494Ddx418291.358ENSETEG00000012955-8291.358Echinops_telfairi
ENSMUSG00000021494Ddx419579.223ENSEBUG00000002053DDX419082.810Eptatretus_burgeri
ENSMUSG00000021494Ddx4110098.714ENSEASG00005012427DDX419998.716Equus_asinus_asinus
ENSMUSG00000021494Ddx4110098.714ENSECAG00000009688DDX419998.716Equus_caballus
ENSMUSG00000021494Ddx419289.685ENSEEUG00000001733DDX419989.753Erinaceus_europaeus
ENSMUSG00000021494Ddx4110084.566ENSELUG00000019496DDX4110084.405Esox_lucius
ENSMUSG00000021494Ddx4110098.875ENSFCAG00000001542DDX4110098.875Felis_catus
ENSMUSG00000021494Ddx419992.395ENSFALG00000008731DDX419595.085Ficedula_albicollis
ENSMUSG00000021494Ddx4110098.392ENSFDAG00000017597DDX4110098.392Fukomys_damarensis
ENSMUSG00000021494Ddx4110085.691ENSFHEG00000008904DDX4110085.691Fundulus_heteroclitus
ENSMUSG00000021494Ddx419978.282ENSGMOG00000006670DDX4110078.120Gadus_morhua
ENSMUSG00000021494Ddx419992.718ENSGALG00000042994DDX419992.718Gallus_gallus
ENSMUSG00000021494Ddx4110085.691ENSGAFG00000005980DDX4110085.691Gambusia_affinis
ENSMUSG00000021494Ddx4110084.615ENSGACG00000018334DDX4110084.615Gasterosteus_aculeatus
ENSMUSG00000021494Ddx419395.147ENSGAGG00000018601DDX419895.406Gopherus_agassizii
ENSMUSG00000021494Ddx4110098.875ENSGGOG00000014484DDX4110098.875Gorilla_gorilla
ENSMUSG00000021494Ddx419787.171ENSHBUG00000010971DDX4110085.370Haplochromis_burtoni
ENSMUSG00000021494Ddx4110075.563ENSHGLG00000014198-10075.402Heterocephalus_glaber_female
ENSMUSG00000021494Ddx4110098.392ENSHGLG00000015092DDX4110098.392Heterocephalus_glaber_female
ENSMUSG00000021494Ddx418883.333ENSHGLG00100002631-10083.333Heterocephalus_glaber_male
ENSMUSG00000021494Ddx4110098.392ENSHGLG00100018132DDX4110098.392Heterocephalus_glaber_male
ENSMUSG00000021494Ddx4110085.691ENSHCOG00000004725DDX4110085.531Hippocampus_comes
ENSMUSG00000021494Ddx419986.016ENSIPUG00000016171ddx419688.136Ictalurus_punctatus
ENSMUSG00000021494Ddx4110099.035ENSSTOG00000003171DDX4110099.035Ictidomys_tridecemlineatus
ENSMUSG00000021494Ddx4110099.035ENSJJAG00000010470Ddx4110099.035Jaculus_jaculus
ENSMUSG00000021494Ddx4110085.852ENSKMAG00000019331DDX4110085.852Kryptolebias_marmoratus
ENSMUSG00000021494Ddx4110085.691ENSLBEG00000028087DDX4110085.691Labrus_bergylta
ENSMUSG00000021494Ddx419989.516ENSLACG00000012899DDX419988.907Latimeria_chalumnae
ENSMUSG00000021494Ddx4110087.299ENSLOCG00000011956DDX419987.159Lepisosteus_oculatus
ENSMUSG00000021494Ddx419998.695ENSLAFG00000026418DDX4110098.695Loxodonta_africana
ENSMUSG00000021494Ddx4110098.714ENSMFAG00000031761DDX4110098.714Macaca_fascicularis
ENSMUSG00000021494Ddx4110098.714ENSMMUG00000016911DDX4110098.714Macaca_mulatta
ENSMUSG00000021494Ddx4110098.714ENSMNEG00000028476DDX4110098.403Macaca_nemestrina
ENSMUSG00000021494Ddx4110098.714ENSMLEG00000040870DDX4110098.403Mandrillus_leucophaeus
ENSMUSG00000021494Ddx4110085.209ENSMAMG00000011237DDX4110085.209Mastacembelus_armatus
ENSMUSG00000021494Ddx419787.171ENSMZEG00005009983DDX4110085.370Maylandia_zebra
ENSMUSG00000021494Ddx419992.880ENSMGAG00000004050DDX419992.880Meleagris_gallopavo
ENSMUSG00000021494Ddx4110099.357ENSMAUG00000008134Ddx4110099.357Mesocricetus_auratus
ENSMUSG00000021494Ddx4110097.910ENSMICG00000007919DDX4110097.910Microcebus_murinus
ENSMUSG00000021494Ddx4110099.196ENSMOCG00000010015Ddx4110099.196Microtus_ochrogaster
ENSMUSG00000021494Ddx4110085.852ENSMMOG00000009039DDX4110085.691Mola_mola
ENSMUSG00000021494Ddx419397.747ENSMODG00000004714DDX4110097.747Monodelphis_domestica
ENSMUSG00000021494Ddx419588.832ENSMALG00000003224DDX419988.814Monopterus_albus
ENSMUSG00000021494Ddx4110099.839MGP_CAROLIEiJ_G0018568Ddx4110099.839Mus_caroli
ENSMUSG00000021494Ddx4110099.839MGP_PahariEiJ_G0019633Ddx4110099.839Mus_pahari
ENSMUSG00000021494Ddx41100100.000MGP_SPRETEiJ_G0019448Ddx41100100.000Mus_spretus
ENSMUSG00000021494Ddx4110099.196ENSMPUG00000012792DDX4110099.196Mustela_putorius_furo
ENSMUSG00000021494Ddx4110098.392ENSMLUG00000006610DDX4110098.392Myotis_lucifugus
ENSMUSG00000021494Ddx4110099.196ENSNGAG00000022111Ddx4110099.196Nannospalax_galili
ENSMUSG00000021494Ddx419787.171ENSNBRG00000015087DDX4110085.370Neolamprologus_brichardi
ENSMUSG00000021494Ddx4110084.887ENSNLEG00000012844DDX4110084.887Nomascus_leucogenys
ENSMUSG00000021494Ddx419993.398ENSMEUG00000014375DDX4110093.398Notamacropus_eugenii
ENSMUSG00000021494Ddx418197.405ENSOPRG00000016604DDX418197.405Ochotona_princeps
ENSMUSG00000021494Ddx4110098.553ENSODEG00000008505DDX4110098.553Octodon_degus
ENSMUSG00000021494Ddx419787.213ENSONIG00000017785DDX4110085.417Oreochromis_niloticus
ENSMUSG00000021494Ddx419585.500ENSOANG00000009671DDX419585.570Ornithorhynchus_anatinus
ENSMUSG00000021494Ddx418996.915ENSOCUG00000023209DDX419996.915Oryctolagus_cuniculus
ENSMUSG00000021494Ddx4110086.495ENSORLG00000006688DDX419987.317Oryzias_latipes
ENSMUSG00000021494Ddx4110086.495ENSORLG00020008411DDX419987.317Oryzias_latipes_hni
ENSMUSG00000021494Ddx4110086.334ENSORLG00015004882DDX419987.154Oryzias_latipes_hsok
ENSMUSG00000021494Ddx4110086.495ENSOMEG00000009020DDX4110086.495Oryzias_melastigma
ENSMUSG00000021494Ddx418083.871ENSOGAG00000029024-10083.871Otolemur_garnettii
ENSMUSG00000021494Ddx4110098.553ENSOGAG00000011123-10098.553Otolemur_garnettii
ENSMUSG00000021494Ddx4110098.553ENSOARG00000005568DDX4110098.553Ovis_aries
ENSMUSG00000021494Ddx4110098.875ENSPPAG00000029499DDX4110098.875Pan_paniscus
ENSMUSG00000021494Ddx4110098.875ENSPPRG00000001013DDX4110098.875Panthera_pardus
ENSMUSG00000021494Ddx4110098.875ENSPTIG00000020225DDX4110098.875Panthera_tigris_altaica
ENSMUSG00000021494Ddx4110098.875ENSPTRG00000017589DDX4110098.875Pan_troglodytes
ENSMUSG00000021494Ddx4110098.714ENSPANG00000012013DDX4110098.714Papio_anubis
ENSMUSG00000021494Ddx419588.889ENSPKIG00000007704DDX419588.983Paramormyrops_kingsleyae
ENSMUSG00000021494Ddx418078.600ENSPSIG00000005060DDX419778.484Pelodiscus_sinensis
ENSMUSG00000021494Ddx4110099.357ENSPEMG00000000049Ddx4110099.357Peromyscus_maniculatus_bairdii
ENSMUSG00000021494Ddx4110093.730ENSPCIG00000002296DDX419893.730Phascolarctos_cinereus
ENSMUSG00000021494Ddx419588.552ENSPFOG00000024441DDX419887.294Poecilia_formosa
ENSMUSG00000021494Ddx419588.702ENSPLAG00000011231DDX419887.438Poecilia_latipinna
ENSMUSG00000021494Ddx419588.702ENSPMEG00000003394DDX419887.438Poecilia_mexicana
ENSMUSG00000021494Ddx419887.092ENSPREG00000005321DDX419987.092Poecilia_reticulata
ENSMUSG00000021494Ddx4110095.820ENSPPYG00000016097DDX4110095.820Pongo_abelii
ENSMUSG00000021494Ddx4181100.000ENSPCAG00000009363DDX4181100.000Procavia_capensis
ENSMUSG00000021494Ddx4110097.910ENSPCOG00000023131DDX4110096.998Propithecus_coquereli
ENSMUSG00000021494Ddx4110094.373ENSPVAG00000007784DDX4110094.051Pteropus_vampyrus
ENSMUSG00000021494Ddx419787.171ENSPNYG00000000212DDX4110085.370Pundamilia_nyererei
ENSMUSG00000021494Ddx419987.967ENSPNAG00000002248DDX419987.480Pygocentrus_nattereri
ENSMUSG00000021494Ddx4110099.196ENSRNOG00000012771Ddx4110099.196Rattus_norvegicus
ENSMUSG00000021494Ddx4110098.553ENSRBIG00000038465DDX4110098.243Rhinopithecus_bieti
ENSMUSG00000021494Ddx4110098.714ENSRROG00000035750DDX4110098.101Rhinopithecus_roxellana
ENSMUSG00000021494Ddx4110098.714ENSSBOG00000033581DDX4110098.714Saimiri_boliviensis_boliviensis
ENSMUSG00000021494Ddx419993.720ENSSHAG00000014005-9993.720Sarcophilus_harrisii
ENSMUSG00000021494Ddx4110086.013ENSSHAG00000011574-10086.013Sarcophilus_harrisii
ENSMUSG00000021494Ddx419986.731ENSSFOG00015000404ddx419588.983Scleropages_formosus
ENSMUSG00000021494Ddx419985.323ENSSMAG00000007208DDX419985.323Scophthalmus_maximus
ENSMUSG00000021494Ddx419285.088ENSSLDG00000010264DDX418785.088Seriola_lalandi_dorsalis
ENSMUSG00000021494Ddx418091.429ENSSARG00000003609DDX418091.429Sorex_araneus
ENSMUSG00000021494Ddx419992.985ENSSPUG00000005794DDX419992.822Sphenodon_punctatus
ENSMUSG00000021494Ddx4110086.495ENSSPAG00000018675DDX4110086.495Stegastes_partitus
ENSMUSG00000021494Ddx4110099.035ENSSSCG00000032642DDX4110099.035Sus_scrofa
ENSMUSG00000021494Ddx419791.928ENSTGUG00000000413DDX419694.646Taeniopygia_guttata
ENSMUSG00000021494Ddx419985.161ENSTRUG00000004445DDX419984.839Takifugu_rubripes
ENSMUSG00000021494Ddx419188.204ENSTNIG00000008991DDX4110088.204Tetraodon_nigroviridis
ENSMUSG00000021494Ddx417299.677ENSTBEG00000002862DDX417299.677Tupaia_belangeri
ENSMUSG00000021494Ddx418098.000ENSTTRG00000015836DDX4110098.000Tursiops_truncatus
ENSMUSG00000021494Ddx4110097.314ENSUAMG00000023036DDX4110099.664Ursus_americanus
ENSMUSG00000021494Ddx4110099.196ENSUMAG00000024285DDX4110099.196Ursus_maritimus
ENSMUSG00000021494Ddx4110094.761ENSVVUG00000026020DDX4110094.761Vulpes_vulpes
ENSMUSG00000021494Ddx419989.211ENSXETG00000033518DDX419988.710Xenopus_tropicalis
ENSMUSG00000021494Ddx4110086.174ENSXMAG00000009768DDX4110086.174Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000166nucleotide binding-IEAFunction
GO:0000398mRNA splicing, via spliceosome-ISOProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003677DNA binding21892174.IDAFunction
GO:0003723RNA binding-IEAFunction
GO:0004386helicase activity-IEAFunction
GO:0005515protein binding21892174.23142775.23222971.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus21892174.IDAComponent
GO:0005634nucleus-ISOComponent
GO:0005681spliceosomal complex-ISOComponent
GO:0005783endoplasmic reticulum21892174.IDAComponent
GO:0006397mRNA processing-IEAProcess
GO:0008283cell proliferation-ISOProcess
GO:0008380RNA splicing-IEAProcess
GO:0016787hydrolase activity-IEAFunction
GO:0030154cell differentiation-ISOProcess
GO:0035458cellular response to interferon-beta21892174.IMPProcess
GO:0045944positive regulation of transcription by RNA polymerase II21892174.IDAProcess
GO:0046872metal ion binding-IEAFunction
GO:0051607defense response to virus21892174.IMPProcess
GO:0071013catalytic step 2 spliceosome-ISOComponent

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