EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000021500 (Gene tree)
Gene ID: 212880
Gene Symbol: Ddx46
Alias: 2200005K02Rik|8430438J23Rik
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 46230 bases
Position: chr13:55635027-55681256
Accession: 1920895
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000133245	DEAD	PF00270.29	2e-50	1	1
ENSMUSP00000153328	DEAD	PF00270.29	2e-50	1	1
ENSMUSP00000097078	DEAD	PF00270.29	4.9e-36	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000224551	-	4056	-	-	- (aa)	-	-
ENSMUST00000172272	-	5676	XM_006517202	ENSMUSP00000133245	1032 (aa)	XP_006517265	Q569Z5
ENSMUST00000099479	-	5664	-	ENSMUSP00000097078	1028 (aa)	-	F8WHR6
ENSMUST00000223736	-	5612	-	ENSMUSP00000153328	1032 (aa)	-	Q569Z5
ENSMUST00000231097	-	432	-	ENSMUSP00000155176	144 (aa)	-	A0A2R8VHK2

Gene Model

Click here to download ENSMUSG00000021500's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000021500's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000021500	Ddx46	100	98.934	ENSG00000145833	DDX46	99	100.000	Homo_sapiens
ENSMUSG00000021500	Ddx46	86	85.393	ENSAPOG00000000193	ddx46	95	82.070	Acanthochromis_polyacanthus
ENSMUSG00000021500	Ddx46	100	98.643	ENSAMEG00000017873	DDX46	100	98.643	Ailuropoda_melanoleuca
ENSMUSG00000021500	Ddx46	86	84.018	ENSACIG00000013235	ddx46	90	84.240	Amphilophus_citrinellus
ENSMUSG00000021500	Ddx46	90	80.801	ENSAOCG00000007758	ddx46	91	80.718	Amphiprion_ocellaris
ENSMUSG00000021500	Ddx46	90	80.903	ENSAPEG00000022648	ddx46	91	80.821	Amphiprion_percula
ENSMUSG00000021500	Ddx46	86	81.323	ENSATEG00000012998	ddx46	91	81.692	Anabas_testudineus
ENSMUSG00000021500	Ddx46	89	92.216	ENSAPLG00000013208	DDX46	89	92.225	Anas_platyrhynchos
ENSMUSG00000021500	Ddx46	85	92.281	ENSACAG00000001437	DDX46	100	92.281	Anolis_carolinensis
ENSMUSG00000021500	Ddx46	100	98.837	ENSANAG00000032116	DDX46	100	98.837	Aotus_nancymaae
ENSMUSG00000021500	Ddx46	86	85.424	ENSACLG00000014804	ddx46	92	85.424	Astatotilapia_calliptera
ENSMUSG00000021500	Ddx46	86	83.134	ENSAMXG00000008413	ddx46	89	81.678	Astyanax_mexicanus
ENSMUSG00000021500	Ddx46	100	98.643	ENSBTAG00000021520	DDX46	100	98.643	Bos_taurus
ENSMUSG00000021500	Ddx46	100	98.837	ENSCJAG00000005697	DDX46	100	98.837	Callithrix_jacchus
ENSMUSG00000021500	Ddx46	100	98.740	ENSCAFG00000001048	DDX46	100	98.740	Canis_familiaris
ENSMUSG00000021500	Ddx46	100	98.643	ENSCAFG00020006070	DDX46	100	98.643	Canis_lupus_dingo
ENSMUSG00000021500	Ddx46	100	98.740	ENSCHIG00000026009	DDX46	100	98.740	Capra_hircus
ENSMUSG00000021500	Ddx46	96	98.790	ENSTSYG00000003177	DDX46	100	98.790	Carlito_syrichta
ENSMUSG00000021500	Ddx46	100	98.837	ENSCPOG00000011362	DDX46	100	98.837	Cavia_porcellus
ENSMUSG00000021500	Ddx46	100	98.837	ENSCCAG00000026721	DDX46	100	98.837	Cebus_capucinus
ENSMUSG00000021500	Ddx46	100	94.671	ENSCATG00000040891	DDX46	100	94.671	Cercocebus_atys
ENSMUSG00000021500	Ddx46	100	99.031	ENSCLAG00000014581	DDX46	100	99.031	Chinchilla_lanigera
ENSMUSG00000021500	Ddx46	80	77.872	ENSCHOG00000005683	DDX46	80	77.628	Choloepus_hoffmanni
ENSMUSG00000021500	Ddx46	85	93.417	ENSCPBG00000008261	DDX46	96	93.417	Chrysemys_picta_bellii
ENSMUSG00000021500	Ddx46	86	67.703	ENSCING00000006813	-	100	73.174	Ciona_intestinalis
ENSMUSG00000021500	Ddx46	89	65.767	ENSCSAVG00000002353	-	97	77.083	Ciona_savignyi
ENSMUSG00000021500	Ddx46	60	99.692	ENSCANG00000014766	DDX46	100	99.692	Colobus_angolensis_palliatus
ENSMUSG00000021500	Ddx46	99	98.825	ENSCGRG00001024140	Ddx46	99	98.825	Cricetulus_griseus_chok1gshd
ENSMUSG00000021500	Ddx46	99	99.415	ENSCGRG00000005152	Ddx46	100	99.415	Cricetulus_griseus_crigri
ENSMUSG00000021500	Ddx46	86	82.174	ENSCSEG00000016886	ddx46	94	81.413	Cynoglossus_semilaevis
ENSMUSG00000021500	Ddx46	86	84.479	ENSCVAG00000022900	ddx46	93	83.685	Cyprinodon_variegatus
ENSMUSG00000021500	Ddx46	100	98.159	ENSDNOG00000011448	DDX46	100	98.159	Dasypus_novemcinctus
ENSMUSG00000021500	Ddx46	90	90.929	ENSDORG00000005447	Ddx46	89	90.389	Dipodomys_ordii
ENSMUSG00000021500	Ddx46	79	88.991	ENSETEG00000018455	DDX46	79	88.991	Echinops_telfairi
ENSMUSG00000021500	Ddx46	98	94.960	ENSEASG00005020329	DDX46	100	94.960	Equus_asinus_asinus
ENSMUSG00000021500	Ddx46	100	98.643	ENSECAG00000018217	DDX46	100	98.643	Equus_caballus
ENSMUSG00000021500	Ddx46	56	75.217	ENSEEUG00000003602	-	67	75.217	Erinaceus_europaeus
ENSMUSG00000021500	Ddx46	86	84.181	ENSELUG00000000817	ddx46	93	83.739	Esox_lucius
ENSMUSG00000021500	Ddx46	100	98.450	ENSFCAG00000026229	DDX46	100	98.450	Felis_catus
ENSMUSG00000021500	Ddx46	85	93.864	ENSFALG00000007947	DDX46	100	93.864	Ficedula_albicollis
ENSMUSG00000021500	Ddx46	100	98.837	ENSFDAG00000021262	DDX46	100	98.837	Fukomys_damarensis
ENSMUSG00000021500	Ddx46	86	82.561	ENSFHEG00000020055	ddx46	93	82.762	Fundulus_heteroclitus
ENSMUSG00000021500	Ddx46	89	82.953	ENSGMOG00000007990	ddx46	91	82.162	Gadus_morhua
ENSMUSG00000021500	Ddx46	90	91.923	ENSGALG00000006404	DDX46	90	92.004	Gallus_gallus
ENSMUSG00000021500	Ddx46	86	78.184	ENSGAFG00000007153	ddx46	91	77.962	Gambusia_affinis
ENSMUSG00000021500	Ddx46	89	83.769	ENSGACG00000000166	ddx46	91	82.505	Gasterosteus_aculeatus
ENSMUSG00000021500	Ddx46	90	92.299	ENSGAGG00000014910	DDX46	90	92.390	Gopherus_agassizii
ENSMUSG00000021500	Ddx46	100	98.837	ENSGGOG00000013843	DDX46	100	98.837	Gorilla_gorilla
ENSMUSG00000021500	Ddx46	86	85.633	ENSHBUG00000021074	ddx46	92	85.633	Haplochromis_burtoni
ENSMUSG00000021500	Ddx46	100	98.740	ENSHGLG00000010455	DDX46	100	98.740	Heterocephalus_glaber_female
ENSMUSG00000021500	Ddx46	100	98.740	ENSHGLG00100016515	DDX46	100	98.740	Heterocephalus_glaber_male
ENSMUSG00000021500	Ddx46	100	76.642	ENSIPUG00000002564	ddx46	90	82.285	Ictalurus_punctatus
ENSMUSG00000021500	Ddx46	65	99.400	ENSSTOG00000025564	DDX46	75	99.391	Ictidomys_tridecemlineatus
ENSMUSG00000021500	Ddx46	100	98.256	ENSJJAG00000013906	Ddx46	100	98.256	Jaculus_jaculus
ENSMUSG00000021500	Ddx46	90	79.303	ENSKMAG00000019510	ddx46	91	79.611	Kryptolebias_marmoratus
ENSMUSG00000021500	Ddx46	86	81.469	ENSLBEG00000027425	ddx46	94	81.250	Labrus_bergylta
ENSMUSG00000021500	Ddx46	100	87.403	ENSLACG00000007965	DDX46	90	90.141	Latimeria_chalumnae
ENSMUSG00000021500	Ddx46	89	85.956	ENSLOCG00000010169	ddx46	90	86.120	Lepisosteus_oculatus
ENSMUSG00000021500	Ddx46	100	98.354	ENSLAFG00000010465	DDX46	100	98.354	Loxodonta_africana
ENSMUSG00000021500	Ddx46	100	98.837	ENSMFAG00000044528	DDX46	100	98.837	Macaca_fascicularis
ENSMUSG00000021500	Ddx46	96	98.485	ENSMMUG00000012463	DDX46	96	98.485	Macaca_mulatta
ENSMUSG00000021500	Ddx46	100	98.740	ENSMNEG00000029903	DDX46	100	98.740	Macaca_nemestrina
ENSMUSG00000021500	Ddx46	100	98.740	ENSMLEG00000033516	DDX46	100	98.740	Mandrillus_leucophaeus
ENSMUSG00000021500	Ddx46	86	85.957	ENSMAMG00000021755	ddx46	91	83.874	Mastacembelus_armatus
ENSMUSG00000021500	Ddx46	86	85.424	ENSMZEG00005008989	ddx46	92	85.424	Maylandia_zebra
ENSMUSG00000021500	Ddx46	90	93.204	ENSMGAG00000008226	DDX46	90	93.290	Meleagris_gallopavo
ENSMUSG00000021500	Ddx46	99	99.022	ENSMAUG00000003267	Ddx46	100	99.022	Mesocricetus_auratus
ENSMUSG00000021500	Ddx46	100	94.283	ENSMICG00000028626	DDX46	100	94.283	Microcebus_murinus
ENSMUSG00000021500	Ddx46	98	91.642	ENSMOCG00000012141	Ddx46	99	91.642	Microtus_ochrogaster
ENSMUSG00000021500	Ddx46	86	85.391	ENSMMOG00000013470	ddx46	91	85.617	Mola_mola
ENSMUSG00000021500	Ddx46	100	96.221	ENSMODG00000014331	DDX46	90	96.004	Monodelphis_domestica
ENSMUSG00000021500	Ddx46	86	84.344	ENSMALG00000016796	ddx46	92	83.462	Monopterus_albus
ENSMUSG00000021500	Ddx46	100	99.903	MGP_CAROLIEiJ_G0018573	Ddx46	100	99.903	Mus_caroli
ENSMUSG00000021500	Ddx46	100	99.709	MGP_PahariEiJ_G0019638	Ddx46	100	99.709	Mus_pahari
ENSMUSG00000021500	Ddx46	100	100.000	MGP_SPRETEiJ_G0019453	Ddx46	100	100.000	Mus_spretus
ENSMUSG00000021500	Ddx46	100	98.643	ENSMPUG00000010045	DDX46	100	98.643	Mustela_putorius_furo
ENSMUSG00000021500	Ddx46	100	98.451	ENSMLUG00000012607	DDX46	100	98.451	Myotis_lucifugus
ENSMUSG00000021500	Ddx46	94	98.653	ENSNGAG00000020157	Ddx46	97	98.653	Nannospalax_galili
ENSMUSG00000021500	Ddx46	86	85.277	ENSNBRG00000008155	ddx46	92	85.504	Neolamprologus_brichardi
ENSMUSG00000021500	Ddx46	100	98.934	ENSNLEG00000008167	DDX46	100	98.934	Nomascus_leucogenys
ENSMUSG00000021500	Ddx46	59	97.273	ENSMEUG00000014890	-	60	97.273	Notamacropus_eugenii
ENSMUSG00000021500	Ddx46	100	97.384	ENSOPRG00000006646	DDX46	100	97.384	Ochotona_princeps
ENSMUSG00000021500	Ddx46	99	98.735	ENSODEG00000010023	DDX46	100	98.735	Octodon_degus
ENSMUSG00000021500	Ddx46	100	80.676	ENSONIG00000017282	ddx46	91	82.992	Oreochromis_niloticus
ENSMUSG00000021500	Ddx46	90	93.757	ENSOANG00000001842	DDX46	96	93.946	Ornithorhynchus_anatinus
ENSMUSG00000021500	Ddx46	100	98.258	ENSOCUG00000012206	DDX46	100	98.258	Oryctolagus_cuniculus
ENSMUSG00000021500	Ddx46	86	83.352	ENSORLG00000000903	ddx46	93	83.556	Oryzias_latipes
ENSMUSG00000021500	Ddx46	86	83.352	ENSORLG00020022093	ddx46	93	83.556	Oryzias_latipes_hni
ENSMUSG00000021500	Ddx46	86	83.352	ENSORLG00015007282	ddx46	93	83.556	Oryzias_latipes_hsok
ENSMUSG00000021500	Ddx46	90	79.179	ENSOMEG00000003338	ddx46	94	83.150	Oryzias_melastigma
ENSMUSG00000021500	Ddx46	90	88.159	ENSOGAG00000011690	-	90	88.159	Otolemur_garnettii
ENSMUSG00000021500	Ddx46	100	96.512	ENSOGAG00000034921	-	100	96.512	Otolemur_garnettii
ENSMUSG00000021500	Ddx46	100	98.645	ENSOARG00000014348	DDX46	100	98.645	Ovis_aries
ENSMUSG00000021500	Ddx46	100	98.837	ENSPPAG00000037804	DDX46	100	98.837	Pan_paniscus
ENSMUSG00000021500	Ddx46	100	98.450	ENSPPRG00000010743	DDX46	100	98.450	Panthera_pardus
ENSMUSG00000021500	Ddx46	100	98.159	ENSPTIG00000012382	DDX46	99	98.159	Panthera_tigris_altaica
ENSMUSG00000021500	Ddx46	100	98.837	ENSPTRG00000017248	DDX46	100	98.837	Pan_troglodytes
ENSMUSG00000021500	Ddx46	90	94.067	ENSPANG00000025084	DDX46	98	88.738	Papio_anubis
ENSMUSG00000021500	Ddx46	100	79.887	ENSPKIG00000010351	ddx46	90	85.017	Paramormyrops_kingsleyae
ENSMUSG00000021500	Ddx46	90	92.803	ENSPSIG00000004522	DDX46	90	92.803	Pelodiscus_sinensis
ENSMUSG00000021500	Ddx46	100	99.419	ENSPEMG00000013593	Ddx46	100	99.419	Peromyscus_maniculatus_bairdii
ENSMUSG00000021500	Ddx46	86	76.932	ENSPMAG00000007922	ddx46	86	74.724	Petromyzon_marinus
ENSMUSG00000021500	Ddx46	99	89.942	ENSPCIG00000009215	DDX46	100	97.251	Phascolarctos_cinereus
ENSMUSG00000021500	Ddx46	86	80.983	ENSPFOG00000004966	ddx46	87	80.856	Poecilia_formosa
ENSMUSG00000021500	Ddx46	87	81.877	ENSPLAG00000023562	ddx46	90	83.187	Poecilia_latipinna
ENSMUSG00000021500	Ddx46	88	82.967	ENSPMEG00000013401	ddx46	95	80.526	Poecilia_mexicana
ENSMUSG00000021500	Ddx46	86	81.663	ENSPREG00000005444	ddx46	87	80.790	Poecilia_reticulata
ENSMUSG00000021500	Ddx46	90	86.933	ENSPPYG00000015792	DDX46	69	95.614	Pongo_abelii
ENSMUSG00000021500	Ddx46	86	95.302	ENSPCAG00000012364	DDX46	86	95.302	Procavia_capensis
ENSMUSG00000021500	Ddx46	71	96.429	ENSPCOG00000018969	DDX46	94	84.265	Propithecus_coquereli
ENSMUSG00000021500	Ddx46	100	97.190	ENSPVAG00000015655	DDX46	100	97.190	Pteropus_vampyrus
ENSMUSG00000021500	Ddx46	86	84.329	ENSPNYG00000012327	ddx46	92	84.329	Pundamilia_nyererei
ENSMUSG00000021500	Ddx46	84	84.512	ENSPNAG00000010806	ddx46	86	84.702	Pygocentrus_nattereri
ENSMUSG00000021500	Ddx46	100	99.419	ENSRNOG00000021637	Ddx46	100	99.419	Rattus_norvegicus
ENSMUSG00000021500	Ddx46	81	99.379	ENSRBIG00000041150	DDX46	69	95.549	Rhinopithecus_bieti
ENSMUSG00000021500	Ddx46	100	98.740	ENSRROG00000029467	DDX46	100	98.740	Rhinopithecus_roxellana
ENSMUSG00000021500	Ddx46	100	73.353	ENSSBOG00000027666	DDX46	99	73.353	Saimiri_boliviensis_boliviensis
ENSMUSG00000021500	Ddx46	100	96.221	ENSSHAG00000014408	DDX46	80	96.004	Sarcophilus_harrisii
ENSMUSG00000021500	Ddx46	90	81.903	ENSSFOG00015020093	ddx46	93	84.170	Scleropages_formosus
ENSMUSG00000021500	Ddx46	86	84.368	ENSSMAG00000007229	ddx46	89	83.592	Scophthalmus_maximus
ENSMUSG00000021500	Ddx46	86	85.504	ENSSDUG00000020991	ddx46	92	85.504	Seriola_dumerili
ENSMUSG00000021500	Ddx46	86	85.504	ENSSLDG00000016854	ddx46	92	85.504	Seriola_lalandi_dorsalis
ENSMUSG00000021500	Ddx46	86	91.516	ENSSARG00000011073	DDX46	100	91.516	Sorex_araneus
ENSMUSG00000021500	Ddx46	86	92.031	ENSSPUG00000008985	DDX46	100	92.972	Sphenodon_punctatus
ENSMUSG00000021500	Ddx46	91	80.311	ENSSPAG00000017946	ddx46	90	84.199	Stegastes_partitus
ENSMUSG00000021500	Ddx46	100	98.547	ENSSSCG00000026644	DDX46	100	98.547	Sus_scrofa
ENSMUSG00000021500	Ddx46	90	93.441	ENSTGUG00000001260	-	90	93.441	Taeniopygia_guttata
ENSMUSG00000021500	Ddx46	88	88.889	ENSTRUG00000008878	ddx46	91	78.848	Takifugu_rubripes
ENSMUSG00000021500	Ddx46	86	84.831	ENSTNIG00000016100	ddx46	87	85.169	Tetraodon_nigroviridis
ENSMUSG00000021500	Ddx46	81	100.000	ENSTBEG00000002799	DDX46	81	100.000	Tupaia_belangeri
ENSMUSG00000021500	Ddx46	90	90.713	ENSTTRG00000016869	DDX46	90	90.713	Tursiops_truncatus
ENSMUSG00000021500	Ddx46	100	96.027	ENSUMAG00000017446	DDX46	100	96.027	Ursus_maritimus
ENSMUSG00000021500	Ddx46	100	95.930	ENSVPAG00000001591	DDX46	100	95.930	Vicugna_pacos
ENSMUSG00000021500	Ddx46	100	98.740	ENSVVUG00000017549	DDX46	100	98.740	Vulpes_vulpes
ENSMUSG00000021500	Ddx46	89	87.324	ENSXETG00000010405	ddx46	90	87.191	Xenopus_tropicalis
ENSMUSG00000021500	Ddx46	88	86.207	ENSXCOG00000004162	ddx46	95	79.396	Xiphophorus_couchianus
ENSMUSG00000021500	Ddx46	92	80.415	ENSXMAG00000008312	ddx46	95	83.942	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0001650	fibrillar center	-	ISO	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0016787	hydrolase activity	-	IEA	Function