EuRBPDB

Description

Ensembl ID: ENSMUSG00000021577 (Gene tree)
Gene ID: 66945
Gene Symbol: Sdha
Alias: 2310034D06Rik|FP|SDH2|SDHF
Full Name: succinate dehydrogenase complex%2C subunit A%2C flavoprotein (Fp)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 28027
Position: chr13: 74322254-74350280
Accession: 1914195
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000160900	-	239	-	-	- (aa)	-	-
ENSMUST00000161456	-	198	-	-	- (aa)	-	-
ENSMUST00000160400	-	438	-	-	- (aa)	-	-
ENSMUST00000022062	-	2900	-	ENSMUSP00000022062	664 (aa)	-	Q8K2B3
ENSMUST00000160667	-	521	-	-	- (aa)	-	-
ENSMUST00000162137	-	420	-	-	- (aa)	-	-
ENSMUST00000161434	-	858	-	-	- (aa)	-	-
ENSMUST00000221594	-	722	-	ENSMUSP00000152298	233 (aa)	-	A0A1Y7VJ55
ENSMUST00000161086	-	647	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00020	Citrate cycle (TCA cycle)	KEGG
mmu00190	Oxidative phosphorylation	KEGG
mmu01100	Metabolic pathways	KEGG
mmu01200	Carbon metabolism	KEGG
mmu04714	Thermogenesis	KEGG
mmu04932	Non-alcoholic fatty liver disease (NAFLD)	KEGG
mmu05010	Alzheimer disease	KEGG
mmu05012	Parkinson disease	KEGG
mmu05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000021577	Sdha	96	71.094	WBGene00015391	sdha-1	99	71.094	Caenorhabditis_elegans
ENSMUSG00000021577	Sdha	95	76.619	FBgn0261439	SdhA	95	76.619	Drosophila_melanogaster
ENSMUSG00000021577	Sdha	99	96.667	ENSG00000073578	SDHA	100	96.701	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000104	succinate dehydrogenase activity	21873635.	IBA	Function
GO:0000104	succinate dehydrogenase activity	-	ISO	Function
GO:0005730	nucleolus	-	ISO	Component
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	16120479.19808025.19837698.	IDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005743	mitochondrial inner membrane	12865426.	HDA	Component
GO:0005743	mitochondrial inner membrane	-	ISO	Component
GO:0005749	mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	21873635.	IBA	Component
GO:0006099	tricarboxylic acid cycle	21873635.	IBA	Process
GO:0006105	succinate metabolic process	-	ISO	Process
GO:0006121	mitochondrial electron transport, succinate to ubiquinone	21873635.	IBA	Process
GO:0007399	nervous system development	-	ISO	Process
GO:0008177	succinate dehydrogenase (ubiquinone) activity	21873635.	IBA	Function
GO:0008177	succinate dehydrogenase (ubiquinone) activity	-	ISO	Function
GO:0009055	electron transfer activity	21873635.	IBA	Function
GO:0016020	membrane	-	IEA	Component
GO:0016491	oxidoreductase activity	-	IEA	Function
GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	-	IEA	Function
GO:0022900	electron transport chain	-	IEA	Process
GO:0022904	respiratory electron transport chain	-	ISO	Process
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0045282	plasma membrane succinate dehydrogenase complex	21873635.	IBA	Component
GO:0050660	flavin adenine dinucleotide binding	21873635.	IBA	Function
GO:0055114	oxidation-reduction process	-	ISO	Process