EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000021645 (Gene tree)
Gene ID
20595
Gene Symbol
Smn1
Alias
SMN
Full Name
survival motor neuron 1
Gene Type
protein_coding
Species
Mus_musculus
Status
putative
Strand
Plus strand
Length
12839 bases
Position
chr13:100124852-100137690
Accession
109257
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000022147SMNPF06003.121.2e-10611
ENSMUSP00000119381SMNPF06003.121.3e-4211
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000022147-1222XM_011244637ENSMUSP00000022147288 (aa)XP_011242939P97801
ENSMUST00000140745-421-ENSMUSP0000011850946 (aa)-D6RI18
ENSMUST00000143937-485-ENSMUSP00000119381161 (aa)-B8JJX7
ENSMUST00000125572-600--- (aa)--
ENSMUST00000135355-417--- (aa)--
ENSMUST00000151389-547--- (aa)--
ENSMUST00000134514-453--- (aa)--
ENSMUST00000147306-639--- (aa)--
ENSMUST00000091321-223-ENSMUSP0000008887139 (aa)-Q5PXT4
Gene Model
Click here to download ENSMUSG00000021645's gene model file
Pathways
Pathway IDPathway NameSource
mmu03013RNA transportKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000021645's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000021645Smn19683.154ENSG00000205571SMN29982.014Homo_sapiens
ENSMUSG00000021645Smn19683.154ENSG00000172062SMN19982.014Homo_sapiens
ENSMUSG00000021645Smn19354.579ENSAPOG00000011324smn19453.261Acanthochromis_polyacanthus
ENSMUSG00000021645Smn19783.630ENSAMEG00000003316-9682.474Ailuropoda_melanoleuca
ENSMUSG00000021645Smn15852.128ENSACIG00000007598smn18958.442Amphilophus_citrinellus
ENSMUSG00000021645Smn18951.550ENSACIG00000019772-9749.624Amphilophus_citrinellus
ENSMUSG00000021645Smn19353.506ENSAOCG00000024444smn19453.623Amphiprion_ocellaris
ENSMUSG00000021645Smn19353.875ENSAPEG00000016504smn19453.986Amphiprion_percula
ENSMUSG00000021645Smn19052.788ENSATEG00000002182smn17954.198Anabas_testudineus
ENSMUSG00000021645Smn18748.936ENSAPLG00000010912-9752.020Anas_platyrhynchos
ENSMUSG00000021645Smn19954.054ENSACAG00000010017-9954.054Anolis_carolinensis
ENSMUSG00000021645Smn19979.592ENSANAG00000032133-9978.571Aotus_nancymaae
ENSMUSG00000021645Smn19349.281ENSACLG00000007308smn18851.866Astatotilapia_calliptera
ENSMUSG00000021645Smn19348.881ENSAMXG00000013884smn19549.817Astyanax_mexicanus
ENSMUSG00000021645Smn19778.648ENSBTAG00000005743SMN210076.897Bos_taurus
ENSMUSG00000021645Smn19681.071ENSCJAG00000016290-9978.912Callithrix_jacchus
ENSMUSG00000021645Smn110083.849ENSCAFG00000007812SMN10083.505Canis_familiaris
ENSMUSG00000021645Smn19984.083ENSCAFG00020019229-9383.737Canis_lupus_dingo
ENSMUSG00000021645Smn19779.787ENSCHIG00000015559-10077.778Capra_hircus
ENSMUSG00000021645Smn19983.045ENSTSYG00000012058-9982.699Carlito_syrichta
ENSMUSG00000021645Smn17664.474ENSCAPG00000011021-10064.912Cavia_aperea
ENSMUSG00000021645Smn19976.871ENSCPOG00000012328-9975.850Cavia_porcellus
ENSMUSG00000021645Smn110076.949ENSCPOG00000036973-10075.593Cavia_porcellus
ENSMUSG00000021645Smn19681.004ENSCCAG00000018127-9979.795Cebus_capucinus
ENSMUSG00000021645Smn19682.796ENSCATG00000037002-9981.655Cercocebus_atys
ENSMUSG00000021645Smn110075.585ENSCLAG00000000284-10075.251Chinchilla_lanigera
ENSMUSG00000021645Smn19684.286ENSCSAG00000015688-9982.935Chlorocebus_sabaeus
ENSMUSG00000021645Smn18671.429ENSCHOG00000007346-10071.429Choloepus_hoffmanni
ENSMUSG00000021645Smn19858.076ENSCPBG00000010968-9956.667Chrysemys_picta_bellii
ENSMUSG00000021645Smn19576.786ENSCANG00000033324-9576.786Colobus_angolensis_palliatus
ENSMUSG00000021645Smn19683.929ENSCANG00000038242-9983.516Colobus_angolensis_palliatus
ENSMUSG00000021645Smn110073.611ENSCGRG00001016998-10073.611Cricetulus_griseus_chok1gshd
ENSMUSG00000021645Smn110095.139ENSCGRG00001017959-10094.792Cricetulus_griseus_chok1gshd
ENSMUSG00000021645Smn110095.139ENSCGRG00000007698Smn110094.792Cricetulus_griseus_crigri
ENSMUSG00000021645Smn19351.590ENSCSEG00000015227smn19750.709Cynoglossus_semilaevis
ENSMUSG00000021645Smn19253.069ENSCVAG00000007498smn19452.837Cyprinodon_variegatus
ENSMUSG00000021645Smn19451.282ENSDARG00000018494smn19552.768Danio_rerio
ENSMUSG00000021645Smn18664.029ENSDNOG00000045949-9067.619Dasypus_novemcinctus
ENSMUSG00000021645Smn18778.322ENSDNOG00000007283-10078.601Dasypus_novemcinctus
ENSMUSG00000021645Smn110076.871ENSDORG00000007082Smn19976.531Dipodomys_ordii
ENSMUSG00000021645Smn17273.729ENSETEG00000001406-9367.539Echinops_telfairi
ENSMUSG00000021645Smn19336.824ENSEBUG00000011902smn19239.286Eptatretus_burgeri
ENSMUSG00000021645Smn19474.088ENSEASG00005018000-9774.088Equus_asinus_asinus
ENSMUSG00000021645Smn110082.131ENSECAG00000015215-10082.131Equus_caballus
ENSMUSG00000021645Smn18677.778ENSEEUG00000015777-10077.381Erinaceus_europaeus
ENSMUSG00000021645Smn19255.435ENSELUG00000018067smn19451.812Esox_lucius
ENSMUSG00000021645Smn110081.443ENSFCAG00000028292SMN10081.100Felis_catus
ENSMUSG00000021645Smn19059.696ENSFALG00000012320-9157.252Ficedula_albicollis
ENSMUSG00000021645Smn110076.254ENSFDAG00000017683-10075.585Fukomys_damarensis
ENSMUSG00000021645Smn16153.933ENSFHEG00000018508smn19649.818Fundulus_heteroclitus
ENSMUSG00000021645Smn19647.038ENSGMOG00000017279smn19648.029Gadus_morhua
ENSMUSG00000021645Smn19358.519ENSGALG00000002430SMN9557.037Gallus_gallus
ENSMUSG00000021645Smn19351.852ENSGAFG00000009501smn19451.825Gambusia_affinis
ENSMUSG00000021645Smn19351.986ENSGACG00000010584smn19150.542Gasterosteus_aculeatus
ENSMUSG00000021645Smn19858.904ENSGAGG00000011374-9958.219Gopherus_agassizii
ENSMUSG00000021645Smn19337.209ENSGAGG00000013639-5454.386Gopherus_agassizii
ENSMUSG00000021645Smn16281.215ENSGGOG00000026704-9179.381Gorilla_gorilla
ENSMUSG00000021645Smn19470.909ENSGGOG00000003872-10069.424Gorilla_gorilla
ENSMUSG00000021645Smn19250.936ENSHBUG00000013987smn19453.759Haplochromis_burtoni
ENSMUSG00000021645Smn19978.351ENSHGLG00000001018-9877.663Heterocephalus_glaber_female
ENSMUSG00000021645Smn110074.830ENSHGLG00000001905-10074.490Heterocephalus_glaber_female
ENSMUSG00000021645Smn19675.177ENSHGLG00100018676-10074.823Heterocephalus_glaber_male
ENSMUSG00000021645Smn19978.351ENSHGLG00100011252-9877.663Heterocephalus_glaber_male
ENSMUSG00000021645Smn19049.814ENSHCOG00000017136smn18750.000Hippocampus_comes
ENSMUSG00000021645Smn19252.222ENSIPUG00000012580smn18350.183Ictalurus_punctatus
ENSMUSG00000021645Smn19186.364ENSSTOG00000012288-10084.477Ictidomys_tridecemlineatus
ENSMUSG00000021645Smn16664.662ENSJJAG00000014853-8964.925Jaculus_jaculus
ENSMUSG00000021645Smn19352.920ENSKMAG00000007239smn19651.136Kryptolebias_marmoratus
ENSMUSG00000021645Smn19352.768ENSLBEG00000022550smn19454.444Labrus_bergylta
ENSMUSG00000021645Smn19337.319ENSLACG00000009808-9535.836Latimeria_chalumnae
ENSMUSG00000021645Smn19254.275ENSLOCG00000011339smn19453.160Lepisosteus_oculatus
ENSMUSG00000021645Smn110079.661ENSLAFG00000003425-9679.322Loxodonta_africana
ENSMUSG00000021645Smn19685.000ENSMFAG00000031523SMN19983.871Macaca_fascicularis
ENSMUSG00000021645Smn19678.495ENSMFAG00000008812-9977.397Macaca_fascicularis
ENSMUSG00000021645Smn19678.495ENSMMUG00000030594-9977.397Macaca_mulatta
ENSMUSG00000021645Smn19685.000ENSMMUG00000020214SMN19983.871Macaca_mulatta
ENSMUSG00000021645Smn18668.085ENSMNEG00000036423-8669.231Macaca_nemestrina
ENSMUSG00000021645Smn19684.643ENSMNEG00000035094-9983.871Macaca_nemestrina
ENSMUSG00000021645Smn19683.871ENSMLEG00000041902-9982.734Mandrillus_leucophaeus
ENSMUSG00000021645Smn19252.574ENSMAMG00000011034smn19451.625Mastacembelus_armatus
ENSMUSG00000021645Smn19249.638ENSMZEG00005013634smn19451.812Maylandia_zebra
ENSMUSG00000021645Smn18748.936ENSMGAG00000008889-9552.284Meleagris_gallopavo
ENSMUSG00000021645Smn110092.014ENSMAUG00000010262Smn110093.403Mesocricetus_auratus
ENSMUSG00000021645Smn19278.947ENSMICG00000034708-9984.091Microcebus_murinus
ENSMUSG00000021645Smn110092.014ENSMOCG00000017833Smn110091.667Microtus_ochrogaster
ENSMUSG00000021645Smn19247.744ENSMMOG00000005504smn19352.308Mola_mola
ENSMUSG00000021645Smn110064.164ENSMODG00000001436-9963.481Monodelphis_domestica
ENSMUSG00000021645Smn19251.838ENSMALG00000008025smn19451.625Monopterus_albus
ENSMUSG00000021645Smn110098.758MGP_CAROLIEiJ_G0018836Smn110098.758Mus_caroli
ENSMUSG00000021645Smn110093.403MGP_PahariEiJ_G0015911Smn110095.139Mus_pahari
ENSMUSG00000021645Smn110099.379MGP_SPRETEiJ_G0019718Smn110099.379Mus_spretus
ENSMUSG00000021645Smn19584.477ENSMPUG00000014470-9884.116Mustela_putorius_furo
ENSMUSG00000021645Smn19782.639ENSMLUG00000010603-9681.605Myotis_lucifugus
ENSMUSG00000021645Smn110085.172ENSNGAG00000019833Smn110084.828Nannospalax_galili
ENSMUSG00000021645Smn15362.338ENSNBRG00000023000smn19452.174Neolamprologus_brichardi
ENSMUSG00000021645Smn19981.507ENSNLEG00000004454-9981.655Nomascus_leucogenys
ENSMUSG00000021645Smn18758.333ENSMEUG00000011393-9959.649Notamacropus_eugenii
ENSMUSG00000021645Smn18676.680ENSOPRG00000002015-10077.470Ochotona_princeps
ENSMUSG00000021645Smn19578.261ENSODEG00000015976-9777.899Octodon_degus
ENSMUSG00000021645Smn19352.688ENSONIG00000011799smn19551.799Oreochromis_niloticus
ENSMUSG00000021645Smn19562.230ENSOANG00000001626-9662.950Ornithorhynchus_anatinus
ENSMUSG00000021645Smn19973.038ENSOCUG00000025183-9972.355Oryctolagus_cuniculus
ENSMUSG00000021645Smn19974.576ENSOCUG00000026649-9977.288Oryctolagus_cuniculus
ENSMUSG00000021645Smn110079.110ENSOCUG00000017097-9979.110Oryctolagus_cuniculus
ENSMUSG00000021645Smn19353.704ENSORLG00000010552smn19453.704Oryzias_latipes
ENSMUSG00000021645Smn19352.045ENSORLG00020007936smn19351.128Oryzias_latipes_hni
ENSMUSG00000021645Smn19350.558ENSORLG00015022425smn19453.704Oryzias_latipes_hsok
ENSMUSG00000021645Smn19352.985ENSOMEG00000007824smn19454.444Oryzias_melastigma
ENSMUSG00000021645Smn19174.444ENSOGAG00000031414-10071.626Otolemur_garnettii
ENSMUSG00000021645Smn19577.899ENSOARG00000005425-10076.812Ovis_aries
ENSMUSG00000021645Smn19683.513ENSPPAG00000036640-9982.374Pan_paniscus
ENSMUSG00000021645Smn110081.787ENSPPRG00000005575-10081.443Panthera_pardus
ENSMUSG00000021645Smn110081.787ENSPTIG00000007745-10081.787Panthera_tigris_altaica
ENSMUSG00000021645Smn19682.270ENSPTRG00000016955-9981.319Pan_troglodytes
ENSMUSG00000021645Smn19983.618ENSPANG00000013601-9983.618Papio_anubis
ENSMUSG00000021645Smn19578.909ENSPANG00000000253-9877.778Papio_anubis
ENSMUSG00000021645Smn19249.091ENSPKIG00000011096smn19749.635Paramormyrops_kingsleyae
ENSMUSG00000021645Smn19355.088ENSPSIG00000014787-9052.817Pelodiscus_sinensis
ENSMUSG00000021645Smn19345.775ENSPMGG00000012285smn19449.425Periophthalmus_magnuspinnatus
ENSMUSG00000021645Smn19740.351ENSPMAG00000005004smn19640.559Petromyzon_marinus
ENSMUSG00000021645Smn19865.854ENSPCIG00000025764-9965.157Phascolarctos_cinereus
ENSMUSG00000021645Smn19353.333ENSPFOG00000007786smn19453.704Poecilia_formosa
ENSMUSG00000021645Smn19353.704ENSPLAG00000012071smn19454.074Poecilia_latipinna
ENSMUSG00000021645Smn19353.333ENSPMEG00000017085smn19453.704Poecilia_mexicana
ENSMUSG00000021645Smn19352.963ENSPREG00000005824smn19452.920Poecilia_reticulata
ENSMUSG00000021645Smn18653.600ENSPPYG00000019189-9954.000Pongo_abelii
ENSMUSG00000021645Smn19281.648ENSPPYG00000015533-9781.648Pongo_abelii
ENSMUSG00000021645Smn19278.309ENSPCAG00000004187-10077.574Procavia_capensis
ENSMUSG00000021645Smn18773.973ENSPCOG00000022307-10065.267Propithecus_coquereli
ENSMUSG00000021645Smn19784.698ENSPVAG00000005977-10082.653Pteropus_vampyrus
ENSMUSG00000021645Smn15362.338ENSPNYG00000014148smn19452.174Pundamilia_nyererei
ENSMUSG00000021645Smn19351.661ENSPNAG00000014007smn18250.000Pygocentrus_nattereri
ENSMUSG00000021645Smn110094.810ENSRNOG00000018067Smn110094.464Rattus_norvegicus
ENSMUSG00000021645Smn19568.929ENSRBIG00000036775-9269.963Rhinopithecus_bieti
ENSMUSG00000021645Smn19684.286ENSRBIG00000037052-9983.516Rhinopithecus_bieti
ENSMUSG00000021645Smn19684.286ENSRROG00000039399-9983.516Rhinopithecus_roxellana
ENSMUSG00000021645Smn19968.601ENSRROG00000031088-9769.580Rhinopithecus_roxellana
ENSMUSG00000021645Smn19679.211ENSSBOG00000011665-9978.082Saimiri_boliviensis_boliviensis
ENSMUSG00000021645Smn18475.600ENSSBOG00000020112-8774.800Saimiri_boliviensis_boliviensis
ENSMUSG00000021645Smn110065.188ENSSHAG00000001499-10063.177Sarcophilus_harrisii
ENSMUSG00000021645Smn19352.000ENSSFOG00015015507smn19452.364Scleropages_formosus
ENSMUSG00000021645Smn19349.110ENSSMAG00000007922smn19451.264Scophthalmus_maximus
ENSMUSG00000021645Smn19351.292ENSSDUG00000018533smn19451.625Seriola_dumerili
ENSMUSG00000021645Smn19351.661ENSSLDG00000021135smn19451.986Seriola_lalandi_dorsalis
ENSMUSG00000021645Smn19660.714ENSSPUG00000000373-9560.289Sphenodon_punctatus
ENSMUSG00000021645Smn19352.593ENSSPAG00000004345smn19452.416Stegastes_partitus
ENSMUSG00000021645Smn19760.714ENSSSCG00000029127-9762.153Sus_scrofa
ENSMUSG00000021645Smn17756.800ENSSSCG00000033865-9556.808Sus_scrofa
ENSMUSG00000021645Smn19781.495ENSSSCG00000016970-10081.633Sus_scrofa
ENSMUSG00000021645Smn19457.914ENSTGUG00000001548-10057.914Taeniopygia_guttata
ENSMUSG00000021645Smn15553.939ENSTRUG00000000736smn9548.175Takifugu_rubripes
ENSMUSG00000021645Smn19349.635ENSTNIG00000009892smn19548.905Tetraodon_nigroviridis
ENSMUSG00000021645Smn16681.771ENSTBEG00000002399-9381.771Tupaia_belangeri
ENSMUSG00000021645Smn19779.359ENSTTRG00000005080-10078.041Tursiops_truncatus
ENSMUSG00000021645Smn16283.516ENSUAMG00000024947-7082.292Ursus_americanus
ENSMUSG00000021645Smn19784.342ENSUMAG00000007842-7483.162Ursus_maritimus
ENSMUSG00000021645Smn19173.208ENSVPAG00000009887-10071.326Vicugna_pacos
ENSMUSG00000021645Smn110083.849ENSVVUG00000006934-10083.505Vulpes_vulpes
ENSMUSG00000021645Smn19138.710ENSXETG00000004912-7962.903Xenopus_tropicalis
ENSMUSG00000021645Smn19553.405ENSXETG00000018189smn29653.659Xenopus_tropicalis
ENSMUSG00000021645Smn19351.636ENSXMAG00000001521smn19550.538Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding-IEAFunction
GO:0005515protein binding11907229.22422766.IPIFunction
GO:0005634nucleus11181573.IDAComponent
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005730nucleolus-ISOComponent
GO:0005737cytoplasm11181573.IDAComponent
GO:0005737cytoplasm-ISOComponent
GO:0005829cytosol-ISOComponent
GO:0006397mRNA processing-IEAProcess
GO:0007019microtubule depolymerization20176735.IMPProcess
GO:0007399nervous system development-IEAProcess
GO:0007409axonogenesis20176735.IMPProcess
GO:0008380RNA splicing-IEAProcess
GO:0010975regulation of neuron projection development24067532.IGIProcess
GO:0015030Cajal body24067532.IDAComponent
GO:0015030Cajal body-ISOComponent
GO:0017134fibroblast growth factor binding-ISOFunction
GO:0032797SMN complex-ISOComponent
GO:0033120positive regulation of RNA splicing22037760.IMPProcess
GO:0034719SMN-Sm protein complex-ISOComponent
GO:0036464cytoplasmic ribonucleoprotein granule-ISOComponent
GO:0042802identical protein binding-ISOFunction
GO:0042995cell projection-IEAComponent
GO:0043005neuron projection-ISOComponent
GO:0043204perikaryon-ISOComponent
GO:0097504Gemini of coiled bodies-ISOComponent

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