EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000021650 (Gene tree)
Gene ID: 68927
Gene Symbol: Ptcd2
Alias: 1190005P08Rik
Full Name: pentatricopeptide repeat domain 2
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 25059 bases
Position: chr13:99319647-99344705
Accession: 1916177
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000022153	MRP-S27	PF10037.9	1.4e-11	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000022153	-	1704	-	ENSMUSP00000022153	381 (aa)	-	Q8R3K3

Gene Model

Click here to download ENSMUSG00000021650's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000021650's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000021650	Ptcd2	100	73.368	ENSG00000049883	PTCD2	100	73.399	Homo_sapiens
ENSMUSG00000021650	Ptcd2	91	45.977	ENSAPOG00000020682	ptcd2	91	45.977	Acanthochromis_polyacanthus
ENSMUSG00000021650	Ptcd2	100	69.974	ENSAMEG00000007194	PTCD2	99	69.974	Ailuropoda_melanoleuca
ENSMUSG00000021650	Ptcd2	91	41.547	ENSACIG00000002053	ptcd2	100	41.547	Amphilophus_citrinellus
ENSMUSG00000021650	Ptcd2	91	45.402	ENSAOCG00000006616	ptcd2	89	45.402	Amphiprion_ocellaris
ENSMUSG00000021650	Ptcd2	91	45.845	ENSAPEG00000022926	ptcd2	89	45.845	Amphiprion_percula
ENSMUSG00000021650	Ptcd2	93	57.345	ENSACAG00000009747	PTCD2	91	57.345	Anolis_carolinensis
ENSMUSG00000021650	Ptcd2	100	71.802	ENSANAG00000029353	PTCD2	99	71.802	Aotus_nancymaae
ENSMUSG00000021650	Ptcd2	91	44.540	ENSACLG00000027742	ptcd2	89	44.540	Astatotilapia_calliptera
ENSMUSG00000021650	Ptcd2	86	46.341	ENSAMXG00000029404	ptcd2	88	46.341	Astyanax_mexicanus
ENSMUSG00000021650	Ptcd2	100	70.833	ENSBTAG00000014675	PTCD2	100	70.833	Bos_taurus
ENSMUSG00000021650	Ptcd2	100	71.279	ENSCJAG00000016364	PTCD2	99	71.279	Callithrix_jacchus
ENSMUSG00000021650	Ptcd2	100	69.713	ENSCAFG00000007982	PTCD2	90	69.713	Canis_familiaris
ENSMUSG00000021650	Ptcd2	91	70.809	ENSCAFG00020019147	PTCD2	97	70.809	Canis_lupus_dingo
ENSMUSG00000021650	Ptcd2	100	71.875	ENSCHIG00000017118	PTCD2	100	71.875	Capra_hircus
ENSMUSG00000021650	Ptcd2	100	68.930	ENSCPOG00000040168	PTCD2	100	68.930	Cavia_porcellus
ENSMUSG00000021650	Ptcd2	79	68.439	ENSCCAG00000021996	-	93	68.439	Cebus_capucinus
ENSMUSG00000021650	Ptcd2	100	70.466	ENSCCAG00000029389	-	99	70.466	Cebus_capucinus
ENSMUSG00000021650	Ptcd2	100	73.107	ENSCATG00000019069	PTCD2	100	73.107	Cercocebus_atys
ENSMUSG00000021650	Ptcd2	96	73.025	ENSCLAG00000000072	PTCD2	96	73.025	Chinchilla_lanigera
ENSMUSG00000021650	Ptcd2	100	72.324	ENSCSAG00000015623	PTCD2	100	72.324	Chlorocebus_sabaeus
ENSMUSG00000021650	Ptcd2	74	71.765	ENSCHOG00000010634	PTCD2	82	71.765	Choloepus_hoffmanni
ENSMUSG00000021650	Ptcd2	98	52.957	ENSCPBG00000000216	PTCD2	95	52.957	Chrysemys_picta_bellii
ENSMUSG00000021650	Ptcd2	100	71.018	ENSCANG00000035636	PTCD2	99	71.018	Colobus_angolensis_palliatus
ENSMUSG00000021650	Ptcd2	100	79.790	ENSCGRG00001015289	Ptcd2	84	79.790	Cricetulus_griseus_chok1gshd
ENSMUSG00000021650	Ptcd2	100	79.790	ENSCGRG00000006193	Ptcd2	84	79.790	Cricetulus_griseus_crigri
ENSMUSG00000021650	Ptcd2	91	43.966	ENSCVAG00000001285	ptcd2	89	43.966	Cyprinodon_variegatus
ENSMUSG00000021650	Ptcd2	93	45.787	ENSDARG00000035391	ptcd2	93	45.787	Danio_rerio
ENSMUSG00000021650	Ptcd2	100	68.668	ENSDNOG00000008719	PTCD2	100	68.668	Dasypus_novemcinctus
ENSMUSG00000021650	Ptcd2	100	71.835	ENSDORG00000004921	Ptcd2	100	71.835	Dipodomys_ordii
ENSMUSG00000021650	Ptcd2	100	63.542	ENSETEG00000016542	PTCD2	99	63.542	Echinops_telfairi
ENSMUSG00000021650	Ptcd2	100	71.204	ENSEASG00005018038	PTCD2	100	71.204	Equus_asinus_asinus
ENSMUSG00000021650	Ptcd2	100	71.204	ENSECAG00000007022	PTCD2	98	71.204	Equus_caballus
ENSMUSG00000021650	Ptcd2	100	65.535	ENSEEUG00000014031	PTCD2	99	65.535	Erinaceus_europaeus
ENSMUSG00000021650	Ptcd2	93	48.305	ENSELUG00000003584	ptcd2	92	48.305	Esox_lucius
ENSMUSG00000021650	Ptcd2	96	66.849	ENSFCAG00000045432	PTCD2	78	66.849	Felis_catus
ENSMUSG00000021650	Ptcd2	86	48.930	ENSFALG00000010299	PTCD2	99	48.930	Ficedula_albicollis
ENSMUSG00000021650	Ptcd2	100	70.496	ENSFDAG00000018461	PTCD2	100	70.496	Fukomys_damarensis
ENSMUSG00000021650	Ptcd2	92	48.864	ENSGMOG00000003637	ptcd2	91	48.864	Gadus_morhua
ENSMUSG00000021650	Ptcd2	93	48.305	ENSGALG00000038260	PTCD2	100	46.859	Gallus_gallus
ENSMUSG00000021650	Ptcd2	97	55.228	ENSGAGG00000021952	PTCD2	96	55.228	Gopherus_agassizii
ENSMUSG00000021650	Ptcd2	100	73.107	ENSGGOG00000010695	PTCD2	99	73.107	Gorilla_gorilla
ENSMUSG00000021650	Ptcd2	91	44.828	ENSHBUG00000009191	ptcd2	89	44.828	Haplochromis_burtoni
ENSMUSG00000021650	Ptcd2	100	68.930	ENSHGLG00000001234	PTCD2	100	68.930	Heterocephalus_glaber_female
ENSMUSG00000021650	Ptcd2	100	68.930	ENSHGLG00100015419	PTCD2	100	68.930	Heterocephalus_glaber_male
ENSMUSG00000021650	Ptcd2	95	46.429	ENSHCOG00000001703	ptcd2	92	46.429	Hippocampus_comes
ENSMUSG00000021650	Ptcd2	88	45.075	ENSIPUG00000006080	ptcd2	91	45.272	Ictalurus_punctatus
ENSMUSG00000021650	Ptcd2	99	72.703	ENSSTOG00000006596	PTCD2	99	72.703	Ictidomys_tridecemlineatus
ENSMUSG00000021650	Ptcd2	100	73.368	ENSJJAG00000024388	Ptcd2	100	73.368	Jaculus_jaculus
ENSMUSG00000021650	Ptcd2	93	41.808	ENSKMAG00000009329	ptcd2	92	41.808	Kryptolebias_marmoratus
ENSMUSG00000021650	Ptcd2	97	43.700	ENSLBEG00000024871	ptcd2	94	43.700	Labrus_bergylta
ENSMUSG00000021650	Ptcd2	100	51.309	ENSLOCG00000011122	ptcd2	99	51.309	Lepisosteus_oculatus
ENSMUSG00000021650	Ptcd2	81	71.383	ENSLAFG00000004115	PTCD2	100	71.383	Loxodonta_africana
ENSMUSG00000021650	Ptcd2	100	72.324	ENSMFAG00000031516	PTCD2	99	72.324	Macaca_fascicularis
ENSMUSG00000021650	Ptcd2	100	72.324	ENSMNEG00000007537	PTCD2	100	72.324	Macaca_nemestrina
ENSMUSG00000021650	Ptcd2	100	73.368	ENSMLEG00000031093	PTCD2	99	73.368	Mandrillus_leucophaeus
ENSMUSG00000021650	Ptcd2	96	46.027	ENSMAMG00000018529	ptcd2	94	46.027	Mastacembelus_armatus
ENSMUSG00000021650	Ptcd2	91	44.540	ENSMZEG00005003625	ptcd2	89	44.540	Maylandia_zebra
ENSMUSG00000021650	Ptcd2	91	48.563	ENSMGAG00000005033	PTCD2	100	48.563	Meleagris_gallopavo
ENSMUSG00000021650	Ptcd2	100	64.567	ENSMAUG00000020253	Ptcd2	100	64.567	Mesocricetus_auratus
ENSMUSG00000021650	Ptcd2	100	72.063	ENSMICG00000004535	PTCD2	99	72.063	Microcebus_murinus
ENSMUSG00000021650	Ptcd2	100	81.627	ENSMOCG00000019985	Ptcd2	100	81.627	Microtus_ochrogaster
ENSMUSG00000021650	Ptcd2	100	53.886	ENSMODG00000001695	PTCD2	100	53.886	Monodelphis_domestica
ENSMUSG00000021650	Ptcd2	91	47.414	ENSMALG00000022372	ptcd2	91	47.414	Monopterus_albus
ENSMUSG00000021650	Ptcd2	100	97.375	MGP_CAROLIEiJ_G0018829	Ptcd2	100	97.375	Mus_caroli
ENSMUSG00000021650	Ptcd2	100	92.913	MGP_PahariEiJ_G0015904	Ptcd2	100	92.913	Mus_pahari
ENSMUSG00000021650	Ptcd2	100	98.950	MGP_SPRETEiJ_G0019711	Ptcd2	100	98.950	Mus_spretus
ENSMUSG00000021650	Ptcd2	97	72.776	ENSMPUG00000014401	PTCD2	97	72.776	Mustela_putorius_furo
ENSMUSG00000021650	Ptcd2	100	69.974	ENSMLUG00000007374	PTCD2	99	69.974	Myotis_lucifugus
ENSMUSG00000021650	Ptcd2	100	75.979	ENSNGAG00000005027	Ptcd2	100	75.979	Nannospalax_galili
ENSMUSG00000021650	Ptcd2	91	44.828	ENSNBRG00000008174	ptcd2	91	44.828	Neolamprologus_brichardi
ENSMUSG00000021650	Ptcd2	87	43.636	ENSNBRG00000000092	-	100	43.636	Neolamprologus_brichardi
ENSMUSG00000021650	Ptcd2	100	71.802	ENSNLEG00000004516	PTCD2	99	71.802	Nomascus_leucogenys
ENSMUSG00000021650	Ptcd2	82	49.045	ENSMEUG00000014012	-	82	49.045	Notamacropus_eugenii
ENSMUSG00000021650	Ptcd2	100	70.757	ENSOPRG00000007290	PTCD2	99	70.757	Ochotona_princeps
ENSMUSG00000021650	Ptcd2	100	71.875	ENSODEG00000016417	PTCD2	100	71.875	Octodon_degus
ENSMUSG00000021650	Ptcd2	76	46.367	ENSONIG00000011269	ptcd2	85	46.367	Oreochromis_niloticus
ENSMUSG00000021650	Ptcd2	96	73.151	ENSOCUG00000007970	PTCD2	100	72.324	Oryctolagus_cuniculus
ENSMUSG00000021650	Ptcd2	96	44.414	ENSORLG00000003851	ptcd2	92	44.414	Oryzias_latipes
ENSMUSG00000021650	Ptcd2	96	43.597	ENSORLG00020009823	ptcd2	94	43.597	Oryzias_latipes_hni
ENSMUSG00000021650	Ptcd2	92	44.857	ENSORLG00015016777	ptcd2	99	44.857	Oryzias_latipes_hsok
ENSMUSG00000021650	Ptcd2	94	42.500	ENSOMEG00000012396	ptcd2	86	42.500	Oryzias_melastigma
ENSMUSG00000021650	Ptcd2	100	69.452	ENSOGAG00000008390	PTCD2	99	69.452	Otolemur_garnettii
ENSMUSG00000021650	Ptcd2	100	71.094	ENSOARG00000005087	PTCD2	99	71.094	Ovis_aries
ENSMUSG00000021650	Ptcd2	100	73.107	ENSPPAG00000028480	PTCD2	99	73.107	Pan_paniscus
ENSMUSG00000021650	Ptcd2	100	73.368	ENSPTRG00000016968	PTCD2	99	73.368	Pan_troglodytes
ENSMUSG00000021650	Ptcd2	91	74.783	ENSPANG00000006611	PTCD2	89	74.783	Papio_anubis
ENSMUSG00000021650	Ptcd2	93	47.619	ENSPKIG00000019896	ptcd2	93	47.619	Paramormyrops_kingsleyae
ENSMUSG00000021650	Ptcd2	83	56.646	ENSPSIG00000014559	PTCD2	98	56.646	Pelodiscus_sinensis
ENSMUSG00000021650	Ptcd2	100	79.112	ENSPEMG00000000884	Ptcd2	100	79.112	Peromyscus_maniculatus_bairdii
ENSMUSG00000021650	Ptcd2	100	56.250	ENSPCIG00000029047	PTCD2	100	56.250	Phascolarctos_cinereus
ENSMUSG00000021650	Ptcd2	91	43.966	ENSPLAG00000010456	ptcd2	91	43.966	Poecilia_latipinna
ENSMUSG00000021650	Ptcd2	91	43.966	ENSPREG00000021797	ptcd2	88	43.966	Poecilia_reticulata
ENSMUSG00000021650	Ptcd2	100	62.663	ENSPPYG00000015543	PTCD2	99	62.663	Pongo_abelii
ENSMUSG00000021650	Ptcd2	78	61.000	ENSPCAG00000006806	PTCD2	96	61.000	Procavia_capensis
ENSMUSG00000021650	Ptcd2	100	66.841	ENSPVAG00000010935	PTCD2	99	66.841	Pteropus_vampyrus
ENSMUSG00000021650	Ptcd2	91	44.540	ENSPNYG00000003122	ptcd2	89	44.540	Pundamilia_nyererei
ENSMUSG00000021650	Ptcd2	93	47.486	ENSPNAG00000021490	ptcd2	93	47.765	Pygocentrus_nattereri
ENSMUSG00000021650	Ptcd2	100	87.664	ENSRNOG00000028403	Ptcd2	100	87.664	Rattus_norvegicus
ENSMUSG00000021650	Ptcd2	100	67.885	ENSRBIG00000032929	PTCD2	99	67.885	Rhinopithecus_bieti
ENSMUSG00000021650	Ptcd2	100	72.063	ENSRROG00000000080	PTCD2	100	72.063	Rhinopithecus_roxellana
ENSMUSG00000021650	Ptcd2	100	70.984	ENSSBOG00000018911	PTCD2	100	70.984	Saimiri_boliviensis_boliviensis
ENSMUSG00000021650	Ptcd2	97	56.369	ENSSHAG00000003833	PTCD2	95	56.369	Sarcophilus_harrisii
ENSMUSG00000021650	Ptcd2	92	44.571	ENSSFOG00015015415	ptcd2	91	44.571	Scleropages_formosus
ENSMUSG00000021650	Ptcd2	92	43.714	ENSSMAG00000010350	ptcd2	91	43.714	Scophthalmus_maximus
ENSMUSG00000021650	Ptcd2	96	46.429	ENSSDUG00000008142	ptcd2	89	46.429	Seriola_dumerili
ENSMUSG00000021650	Ptcd2	96	46.154	ENSSLDG00000015284	ptcd2	93	46.154	Seriola_lalandi_dorsalis
ENSMUSG00000021650	Ptcd2	81	62.460	ENSSARG00000004983	PTCD2	99	62.460	Sorex_araneus
ENSMUSG00000021650	Ptcd2	93	50.281	ENSSPUG00000000176	PTCD2	90	50.281	Sphenodon_punctatus
ENSMUSG00000021650	Ptcd2	91	45.977	ENSSPAG00000008591	ptcd2	89	45.977	Stegastes_partitus
ENSMUSG00000021650	Ptcd2	100	71.129	ENSSSCG00000016975	PTCD2	90	71.129	Sus_scrofa
ENSMUSG00000021650	Ptcd2	91	48.986	ENSTGUG00000005705	PTCD2	99	48.986	Taeniopygia_guttata
ENSMUSG00000021650	Ptcd2	100	68.668	ENSTBEG00000016559	PTCD2	99	68.668	Tupaia_belangeri
ENSMUSG00000021650	Ptcd2	100	71.094	ENSTTRG00000011851	PTCD2	99	71.094	Tursiops_truncatus
ENSMUSG00000021650	Ptcd2	97	70.889	ENSUAMG00000007583	PTCD2	87	70.889	Ursus_americanus
ENSMUSG00000021650	Ptcd2	97	70.620	ENSUMAG00000007666	PTCD2	97	70.620	Ursus_maritimus
ENSMUSG00000021650	Ptcd2	100	70.052	ENSVPAG00000009597	PTCD2	99	70.052	Vicugna_pacos
ENSMUSG00000021650	Ptcd2	100	70.235	ENSVVUG00000007299	-	100	70.235	Vulpes_vulpes
ENSMUSG00000021650	Ptcd2	94	55.153	ENSXETG00000031652	PTCD2	94	55.153	Xenopus_tropicalis
ENSMUSG00000021650	Ptcd2	91	43.678	ENSXMAG00000005940	ptcd2	82	43.678	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001822	kidney development	18729827.	IMP	Process
GO:0001889	liver development	18729827.	IMP	Process
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0005739	mitochondrion	18729827.	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0007005	mitochondrion organization	18729827.	IMP	Process
GO:0007507	heart development	18729827.	IMP	Process
GO:0010468	regulation of gene expression	18729827.	IMP	Process
GO:0048747	muscle fiber development	18729827.	IMP	Process
GO:0050684	regulation of mRNA processing	18729827.	IMP	Process
GO:0055010	ventricular cardiac muscle tissue morphogenesis	18729827.	IMP	Process