EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000132364	-	663	-	-	- (aa)	-	-
ENSMUST00000022293	-	1954	-	ENSMUSP00000022293	295 (aa)	-	Q60930
ENSMUST00000153320	-	893	-	ENSMUSP00000115560	201 (aa)	-	D3YZT5
ENSMUST00000152562	-	377	-	ENSMUSP00000123032	75 (aa)	-	D3YUN8
ENSMUST00000173456	-	956	-	ENSMUSP00000134023	283 (aa)	-	G3UX26
ENSMUST00000147715	-	407	-	-	- (aa)	-	-
ENSMUST00000142084	-	2039	-	-	- (aa)	-	-
ENSMUST00000130224	-	595	-	-	- (aa)	-	-
ENSMUST00000224373	-	874	-	ENSMUSP00000152916	246 (aa)	-	A0A286YCR8
ENSMUST00000172727	-	1291	-	ENSMUSP00000133525	283 (aa)	-	G3UX26

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04020	Calcium signaling pathway	KEGG
mmu04022	cGMP-PKG signaling pathway	KEGG
mmu04216	Ferroptosis	KEGG
mmu04217	Necroptosis	KEGG
mmu04218	Cellular senescence	KEGG
mmu04621	NOD-like receptor signaling pathway	KEGG
mmu04979	Cholesterol metabolism	KEGG
mmu05012	Parkinson disease	KEGG
mmu05016	Huntington disease	KEGG
mmu05166	Human T-cell leukemia virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000021771	Vdac2	99	41.637	WBGene00019900	vdac-1	98	41.637	Caenorhabditis_elegans
ENSMUSG00000021771	Vdac2	100	97.173	ENSG00000165637	VDAC2	98	97.091	Homo_sapiens
ENSMUSG00000021771	Vdac2	100	74.205	ENSG00000213585	VDAC1	100	74.205	Homo_sapiens
ENSMUSG00000021771	Vdac2	100	74.205	ENSMUSG00000020402	Vdac1	100	74.205	Mus_musculus
ENSMUSG00000021771	Vdac2	100	73.145	ENSMUSG00000008892	Vdac3	100	73.145	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0001669	acrosomal vesicle	-	ISO	Component
GO:0005515	protein binding	12881569.	IPI	Function
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005741	mitochondrial outer membrane	21873635.	IBA	Component
GO:0005743	mitochondrial inner membrane	12865426.	HDA	Component
GO:0006811	ion transport	-	IEA	Process
GO:0006820	anion transport	-	ISO	Process
GO:0007339	binding of sperm to zona pellucida	-	ISO	Process
GO:0008021	synaptic vesicle	-	ISO	Component
GO:0008308	voltage-gated anion channel activity	21873635.	IBA	Function
GO:0008308	voltage-gated anion channel activity	-	ISO	Function
GO:0015288	porin activity	-	IEA	Function
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0032272	negative regulation of protein polymerization	12881569.	IMP	Process
GO:0042645	mitochondrial nucleoid	-	ISO	Component
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0045121	membrane raft	-	ISO	Component
GO:0046930	pore complex	-	IEA	Component
GO:0055085	transmembrane transport	-	IEA	Process
GO:0098656	anion transmembrane transport	-	IEA	Process
GO:2001243	negative regulation of intrinsic apoptotic signaling pathway	12881569.	IMP	Process