EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000021843 (Gene tree)
Gene ID: 16709
Gene Symbol: Ktn1
Alias: -
Full Name: kinectin 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 91447
Position: chr14: 47648448-47739894
Accession: 109153
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000022391	-	4484	XM_006518628	ENSMUSP00000022391	1327 (aa)	XP_006518691	F8VQC7
ENSMUST00000190857	-	4100	-	-	- (aa)	-	-
ENSMUST00000188263	-	518	-	-	- (aa)	-	-
ENSMUST00000191446	-	4021	XM_006518642	ENSMUSP00000140748	1275 (aa)	XP_006518705	A0A087WRS1
ENSMUST00000191511	-	3962	XM_006518647	ENSMUSP00000139946	1252 (aa)	XP_006518710	A0A087WPW5
ENSMUST00000186627	-	3840	XM_006518653	ENSMUSP00000140873	1228 (aa)	XP_006518716	A0A087WS29
ENSMUST00000189101	-	3761	XM_006518658	ENSMUSP00000140178	1200 (aa)	XP_006518721	A0A087WQF8
ENSMUST00000185343	-	3846	XM_006518652	ENSMUSP00000140186	1229 (aa)	XP_006518715	A0A087WQG4
ENSMUST00000185940	-	3869	XM_006518656	ENSMUSP00000139625	1223 (aa)	XP_006518719	A0A087WP48
ENSMUST00000187262	-	3913	XM_006518648	ENSMUSP00000140206	1252 (aa)	XP_006518711	A0A087WQI3
ENSMUST00000190252	-	4436	XM_017315897	ENSMUSP00000140011	1270 (aa)	XP_017171386	A0A087WQ25
ENSMUST00000190999	-	4031	XM_006518641	ENSMUSP00000139673	1275 (aa)	XP_006518704	A0A087WP85
ENSMUST00000187039	-	3875	XM_011244979	ENSMUSP00000140202	1223 (aa)	XP_011243281	A0A087WP48
ENSMUST00000190182	-	3984	XM_006518632	ENSMUSP00000140301	1275 (aa)	XP_006518695	A0A087WQQ5
ENSMUST00000189986	-	4298	-	ENSMUSP00000139970	178 (aa)	-	A0A087WPY8
ENSMUST00000187839	-	7945	-	ENSMUSP00000140324	1327 (aa)	-	F8VQC7
ENSMUST00000188553	-	3918	XM_006518646	ENSMUSP00000140865	1253 (aa)	XP_006518709	A0A087WS23
ENSMUST00000188330	-	3819	XM_006518654	ENSMUSP00000140845	1224 (aa)	XP_006518717	A0A087WS04
ENSMUST00000190535	-	4112	XM_006518633	ENSMUSP00000139952	1304 (aa)	XP_006518696	A0A087WPX0
ENSMUST00000188049	-	450	-	-	- (aa)	-	-
ENSMUST00000189533	-	3941	XM_006518651	ENSMUSP00000140142	1247 (aa)	XP_006518714	A0A087WQD0
ENSMUST00000186466	-	634	-	ENSMUSP00000140523	176 (aa)	-	A0A087WR91
ENSMUST00000186700	-	1306	-	-	- (aa)	-	-
ENSMUST00000191018	-	4033	XM_006518639	ENSMUSP00000139585	1280 (aa)	XP_006518702	A0A087WP14
ENSMUST00000190164	-	463	-	-	- (aa)	-	-
ENSMUST00000186761	-	3902	XM_006518640	ENSMUSP00000139521	1247 (aa)	XP_006518703	A0A087WNW3

Gene Model

Click here to download ENSMUSG00000021843's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000021843's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000021843	Ktn1	100	86.364	ENSG00000126777	KTN1	100	90.667	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005783	endoplasmic reticulum	11486041.	IDA	Component
GO:0007018	microtubule-based movement	11486041.	TAS	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0019894	kinesin binding	11486041.	TAS	Function