EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000021938 (Gene tree)
Gene ID
66645
Gene Symbol
Pspc1
Alias
5730470C09Rik|PSP1
Full Name
paraspeckle protein 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
57607 bases
Position
chr14:56720710-56778316
Accession
1913895
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000133038RRM_1PF00076.224.5e-3212
ENSMUSP00000133038RRM_1PF00076.224.5e-3222
ENSMUSP00000022507RRM_1PF00076.226.3e-3212
ENSMUSP00000022507RRM_1PF00076.226.3e-3222
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000163924-2863-ENSMUSP00000133038466 (aa)-Q8R326
ENSMUST00000022507-4114XM_006519393ENSMUSP00000022507523 (aa)-Q8R326
ENSMUST00000168575-601-ENSMUSP0000012578059 (aa)-F7D909
ENSMUST00000168524-528--- (aa)--
Gene Model
Click here to download ENSMUSG00000021938's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000021938's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000021938Pspc18367.347ENSMUSG00000031311Nono8066.230
ENSMUSG00000021938Pspc19335.484ENSMUSG00000033760Rbm4b7233.036
ENSMUSG00000021938Pspc18371.429ENSMUSG00000028820Sfpq5565.891
ENSMUSG00000021938Pspc16841.304ENSMUSG00000045193Cirbp6834.247
ENSMUSG00000021938Pspc19236.066ENSMUSG00000094936Rbm47733.036
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000021938Pspc110097.519ENSG00000121390PSPC110097.519Homo_sapiens
ENSMUSG00000021938Pspc18875.121ENSAPOG00000015946pspc18172.477Acanthochromis_polyacanthus
ENSMUSG00000021938Pspc110097.137ENSAMEG00000017420PSPC110097.137Ailuropoda_melanoleuca
ENSMUSG00000021938Pspc19959.149ENSACIG00000018695pspc18759.110Amphilophus_citrinellus
ENSMUSG00000021938Pspc18874.638ENSAOCG00000005279pspc18172.018Amphiprion_ocellaris
ENSMUSG00000021938Pspc18874.638ENSAPEG00000015927pspc18172.018Amphiprion_percula
ENSMUSG00000021938Pspc18369.388ENSATEG00000004878pspc18657.325Anabas_testudineus
ENSMUSG00000021938Pspc18373.469ENSAPLG00000003643SFPQ6969.126Anas_platyrhynchos
ENSMUSG00000021938Pspc17793.564ENSAPLG00000006246PSPC110093.564Anas_platyrhynchos
ENSMUSG00000021938Pspc19886.638ENSACAG00000002093PSPC19985.333Anolis_carolinensis
ENSMUSG00000021938Pspc18371.429ENSACAG00000013307-5665.027Anolis_carolinensis
ENSMUSG00000021938Pspc110097.710ENSANAG00000000059PSPC110097.710Aotus_nancymaae
ENSMUSG00000021938Pspc19955.765ENSACLG00000027220pspc110053.945Astatotilapia_calliptera
ENSMUSG00000021938Pspc19968.565ENSAMXG00000036881pspc18272.889Astyanax_mexicanus
ENSMUSG00000021938Pspc110095.038ENSBTAG00000003934PSPC110094.466Bos_taurus
ENSMUSG00000021938Pspc110097.710ENSCJAG00000004554PSPC110097.710Callithrix_jacchus
ENSMUSG00000021938Pspc110097.328ENSCAFG00020002009PSPC110097.328Canis_lupus_dingo
ENSMUSG00000021938Pspc110095.038ENSCHIG00000016708PSPC110094.466Capra_hircus
ENSMUSG00000021938Pspc18087.707ENSTSYG00000032882PSPC19385.071Carlito_syrichta
ENSMUSG00000021938Pspc110095.420ENSCPOG00000000395PSPC110094.847Cavia_porcellus
ENSMUSG00000021938Pspc110097.710ENSCCAG00000033498PSPC110097.710Cebus_capucinus
ENSMUSG00000021938Pspc110097.137ENSCATG00000036434PSPC110097.137Cercocebus_atys
ENSMUSG00000021938Pspc18987.124ENSCLAG00000005241PSPC110087.124Chinchilla_lanigera
ENSMUSG00000021938Pspc110090.840ENSCHOG00000008913PSPC110090.649Choloepus_hoffmanni
ENSMUSG00000021938Pspc19987.238ENSCPBG00000020859PSPC19987.452Chrysemys_picta_bellii
ENSMUSG00000021938Pspc19058.491ENSCSAVG00000003533-6455.882Ciona_savignyi
ENSMUSG00000021938Pspc17884.975ENSCANG00000018948PSPC18799.620Colobus_angolensis_palliatus
ENSMUSG00000021938Pspc110098.853ENSCGRG00001018368Pspc110098.853Cricetulus_griseus_chok1gshd
ENSMUSG00000021938Pspc110098.853ENSCGRG00000011724Pspc110098.853Cricetulus_griseus_crigri
ENSMUSG00000021938Pspc18063.830ENSCSEG00000008899-6565.354Cynoglossus_semilaevis
ENSMUSG00000021938Pspc18569.697ENSCVAG00000007679-8366.147Cyprinodon_variegatus
ENSMUSG00000021938Pspc19968.230ENSDARG00000006621pspc110067.229Danio_rerio
ENSMUSG00000021938Pspc110096.183ENSDNOG00000011078PSPC110096.374Dasypus_novemcinctus
ENSMUSG00000021938Pspc110094.466ENSDORG00000016050Pspc110094.466Dipodomys_ordii
ENSMUSG00000021938Pspc155100.000ENSETEG00000000502-72100.000Echinops_telfairi
ENSMUSG00000021938Pspc18664.428ENSEBUG00000003964-6272.254Eptatretus_burgeri
ENSMUSG00000021938Pspc18344.898ENSEBUG00000010133pspc17848.822Eptatretus_burgeri
ENSMUSG00000021938Pspc110096.941ENSEASG00005000119PSPC110096.941Equus_asinus_asinus
ENSMUSG00000021938Pspc110096.941ENSECAG00000017286PSPC110096.941Equus_caballus
ENSMUSG00000021938Pspc18389.796ENSEEUG00000011288-8881.988Erinaceus_europaeus
ENSMUSG00000021938Pspc19968.499ENSELUG00000003746pspc19472.010Esox_lucius
ENSMUSG00000021938Pspc110097.328ENSFCAG00000027841PSPC110097.328Felis_catus
ENSMUSG00000021938Pspc19987.954ENSFALG00000008750PSPC19987.954Ficedula_albicollis
ENSMUSG00000021938Pspc110093.690ENSFDAG00000002617PSPC110093.690Fukomys_damarensis
ENSMUSG00000021938Pspc18377.551ENSGMOG00000015074pspc19263.105Gadus_morhua
ENSMUSG00000021938Pspc19987.287ENSGALG00000017142PSPC19987.908Gallus_gallus
ENSMUSG00000021938Pspc18367.347ENSGAFG00000006327pspc17275.072Gambusia_affinis
ENSMUSG00000021938Pspc18669.307ENSGACG00000014901pspc19273.171Gasterosteus_aculeatus
ENSMUSG00000021938Pspc18371.429ENSGAGG00000017325-5866.580Gopherus_agassizii
ENSMUSG00000021938Pspc19986.174ENSGAGG00000019164PSPC19987.452Gopherus_agassizii
ENSMUSG00000021938Pspc110097.328ENSGGOG00000003414PSPC110097.328Gorilla_gorilla
ENSMUSG00000021938Pspc19966.250ENSHBUG00000001139pspc110063.401Haplochromis_burtoni
ENSMUSG00000021938Pspc110095.802ENSHGLG00000018811PSPC110095.802Heterocephalus_glaber_female
ENSMUSG00000021938Pspc18391.837ENSHGLG00100007962PSPC110092.264Heterocephalus_glaber_male
ENSMUSG00000021938Pspc18270.312ENSHCOG00000013251pspc19364.608Hippocampus_comes
ENSMUSG00000021938Pspc18877.295ENSIPUG00000013192pspc19172.577Ictalurus_punctatus
ENSMUSG00000021938Pspc110097.519ENSSTOG00000026833PSPC110097.519Ictidomys_tridecemlineatus
ENSMUSG00000021938Pspc110097.706ENSJJAG00000018334Pspc110097.706Jaculus_jaculus
ENSMUSG00000021938Pspc18363.265ENSKMAG00000013525-9649.524Kryptolebias_marmoratus
ENSMUSG00000021938Pspc18871.498ENSLBEG00000004474pspc17275.291Labrus_bergylta
ENSMUSG00000021938Pspc19977.684ENSLACG00000010762PSPC19977.444Latimeria_chalumnae
ENSMUSG00000021938Pspc19978.525ENSLOCG00000010832pspc19977.586Lepisosteus_oculatus
ENSMUSG00000021938Pspc110095.985ENSLAFG00000010968PSPC110095.985Loxodonta_africana
ENSMUSG00000021938Pspc110097.519ENSMFAG00000032728PSPC110097.519Macaca_fascicularis
ENSMUSG00000021938Pspc110097.519ENSMMUG00000020262PSPC110097.519Macaca_mulatta
ENSMUSG00000021938Pspc110097.519ENSMNEG00000027401PSPC110097.519Macaca_nemestrina
ENSMUSG00000021938Pspc110098.500ENSMLEG00000039043PSPC110098.500Mandrillus_leucophaeus
ENSMUSG00000021938Pspc18672.772ENSMAMG00000004333pspc18761.915Mastacembelus_armatus
ENSMUSG00000021938Pspc18072.340ENSMZEG00005028170-6575.000Maylandia_zebra
ENSMUSG00000021938Pspc19955.765ENSMZEG00005005726pspc110053.945Maylandia_zebra
ENSMUSG00000021938Pspc17893.350ENSMGAG00000015134PSPC110093.350Meleagris_gallopavo
ENSMUSG00000021938Pspc110092.918ENSMAUG00000021067Pspc110092.918Mesocricetus_auratus
ENSMUSG00000021938Pspc110097.425ENSMICG00000013970PSPC110097.132Microcebus_murinus
ENSMUSG00000021938Pspc110099.426ENSMOCG00000006060Pspc110099.426Microtus_ochrogaster
ENSMUSG00000021938Pspc18068.085ENSMMOG00000004352pspc15951.929Mola_mola
ENSMUSG00000021938Pspc19996.328ENSMODG00000008029PSPC17895.679Monodelphis_domestica
ENSMUSG00000021938Pspc18672.030ENSMALG00000008914pspc18170.629Monopterus_albus
ENSMUSG00000021938Pspc110099.809MGP_CAROLIEiJ_G0019341Pspc110099.809Mus_caroli
ENSMUSG00000021938Pspc110099.809MGP_PahariEiJ_G0030359Pspc1100100.000Mus_pahari
ENSMUSG00000021938Pspc110099.809MGP_SPRETEiJ_G0020232Pspc1100100.000Mus_spretus
ENSMUSG00000021938Pspc110096.947ENSMPUG00000013347PSPC110096.947Mustela_putorius_furo
ENSMUSG00000021938Pspc110095.825ENSMLUG00000017663PSPC110095.825Myotis_lucifugus
ENSMUSG00000021938Pspc110097.706ENSNGAG00000011271Pspc110097.706Nannospalax_galili
ENSMUSG00000021938Pspc18070.213ENSNBRG00000014059pspc19260.197Neolamprologus_brichardi
ENSMUSG00000021938Pspc110097.519ENSNLEG00000001294PSPC110097.519Nomascus_leucogenys
ENSMUSG00000021938Pspc18495.703ENSMEUG00000000476PSPC18495.703Notamacropus_eugenii
ENSMUSG00000021938Pspc110084.542ENSODEG00000007817-10081.132Octodon_degus
ENSMUSG00000021938Pspc19987.500ENSODEG00000019012-10084.906Octodon_degus
ENSMUSG00000021938Pspc19966.458ENSONIG00000012010pspc19962.888Oreochromis_niloticus
ENSMUSG00000021938Pspc17697.000ENSOANG00000009017-10097.000Ornithorhynchus_anatinus
ENSMUSG00000021938Pspc19966.667ENSOANG00000011381-9963.619Ornithorhynchus_anatinus
ENSMUSG00000021938Pspc110097.328ENSOCUG00000006153PSPC110097.328Oryctolagus_cuniculus
ENSMUSG00000021938Pspc18673.881ENSORLG00000004232-8764.108Oryzias_latipes
ENSMUSG00000021938Pspc18674.010ENSORLG00020000578PSPC18765.546Oryzias_latipes_hni
ENSMUSG00000021938Pspc18674.010ENSORLG00015017480pspc17771.776Oryzias_latipes_hsok
ENSMUSG00000021938Pspc110097.901ENSOGAG00000012643PSPC110097.901Otolemur_garnettii
ENSMUSG00000021938Pspc110090.857ENSOARG00000014163PSPC110090.857Ovis_aries
ENSMUSG00000021938Pspc18991.845ENSPPAG00000009836PSPC19696.765Pan_paniscus
ENSMUSG00000021938Pspc110097.328ENSPPRG00000008833PSPC110097.328Panthera_pardus
ENSMUSG00000021938Pspc110082.409ENSPTIG00000016917PSPC110082.409Panthera_tigris_altaica
ENSMUSG00000021938Pspc19997.408ENSPTRG00000005677PSPC19997.331Pan_troglodytes
ENSMUSG00000021938Pspc110097.328ENSPANG00000001992PSPC110097.328Papio_anubis
ENSMUSG00000021938Pspc18779.259ENSPKIG00000003578pspc18177.701Paramormyrops_kingsleyae
ENSMUSG00000021938Pspc19987.006ENSPSIG00000005168PSPC19986.415Pelodiscus_sinensis
ENSMUSG00000021938Pspc18061.702ENSPMGG00000015135pspc18669.968Periophthalmus_magnuspinnatus
ENSMUSG00000021938Pspc110099.426ENSPEMG00000015214Pspc110099.426Peromyscus_maniculatus_bairdii
ENSMUSG00000021938Pspc18338.776ENSPMAG00000004618pspc17947.692Petromyzon_marinus
ENSMUSG00000021938Pspc19996.537ENSPCIG00000017680PSPC110096.176Phascolarctos_cinereus
ENSMUSG00000021938Pspc19070.534ENSPFOG00000003362pspc19366.126Poecilia_formosa
ENSMUSG00000021938Pspc19070.534ENSPLAG00000011540pspc19265.720Poecilia_latipinna
ENSMUSG00000021938Pspc18371.429ENSPLAG00000004407-5364.770Poecilia_latipinna
ENSMUSG00000021938Pspc18371.429ENSPMEG00000001025-5364.770Poecilia_mexicana
ENSMUSG00000021938Pspc19070.070ENSPMEG00000008322pspc19265.720Poecilia_mexicana
ENSMUSG00000021938Pspc19069.838ENSPREG00000007786pspc19265.720Poecilia_reticulata
ENSMUSG00000021938Pspc110097.425ENSPPYG00000005186PSPC110097.132Pongo_abelii
ENSMUSG00000021938Pspc176100.000ENSPCAG00000008314-6699.390Procavia_capensis
ENSMUSG00000021938Pspc110093.511ENSPCOG00000014364PSPC110093.511Propithecus_coquereli
ENSMUSG00000021938Pspc110092.734ENSPVAG00000005036PSPC110093.690Pteropus_vampyrus
ENSMUSG00000021938Pspc19956.042ENSPNYG00000008893pspc110054.128Pundamilia_nyererei
ENSMUSG00000021938Pspc19970.085ENSPNAG00000016511pspc110066.851Pygocentrus_nattereri
ENSMUSG00000021938Pspc110099.235ENSRNOG00000020782Pspc110099.235Rattus_norvegicus
ENSMUSG00000021938Pspc19397.336ENSRBIG00000036057PSPC110097.336Rhinopithecus_bieti
ENSMUSG00000021938Pspc110097.328ENSRROG00000036334PSPC110097.328Rhinopithecus_roxellana
ENSMUSG00000021938Pspc17987.923ENSSBOG00000028172PSPC19094.946Saimiri_boliviensis_boliviensis
ENSMUSG00000021938Pspc110090.875ENSSHAG00000004696PSPC110090.875Sarcophilus_harrisii
ENSMUSG00000021938Pspc18681.000ENSSFOG00015001395pspc18978.322Scleropages_formosus
ENSMUSG00000021938Pspc18671.883ENSSMAG00000001761pspc18674.286Scophthalmus_maximus
ENSMUSG00000021938Pspc18675.743ENSSDUG00000010651pspc17673.832Seriola_dumerili
ENSMUSG00000021938Pspc18666.500ENSSLDG00000004284pspc18161.521Seriola_lalandi_dorsalis
ENSMUSG00000021938Pspc110089.101ENSSARG00000000888PSPC110089.484Sorex_araneus
ENSMUSG00000021938Pspc18373.469ENSSPUG00000001136-5361.453Sphenodon_punctatus
ENSMUSG00000021938Pspc18391.837ENSSPUG00000008550PSPC19975.432Sphenodon_punctatus
ENSMUSG00000021938Pspc18874.396ENSSPAG00000001921pspc18269.824Stegastes_partitus
ENSMUSG00000021938Pspc110095.411ENSSSCG00000009569PSPC110096.000Sus_scrofa
ENSMUSG00000021938Pspc18994.433ENSTGUG00000011295PSPC110094.433Taeniopygia_guttata
ENSMUSG00000021938Pspc19462.416ENSTRUG00000011335pspc17766.019Takifugu_rubripes
ENSMUSG00000021938Pspc18667.327ENSTNIG00000010358pspc18466.114Tetraodon_nigroviridis
ENSMUSG00000021938Pspc19979.914ENSTBEG00000002361PSPC110076.099Tupaia_belangeri
ENSMUSG00000021938Pspc110095.793ENSTTRG00000003343PSPC110095.793Tursiops_truncatus
ENSMUSG00000021938Pspc18391.837ENSUAMG00000012309PSPC110097.151Ursus_americanus
ENSMUSG00000021938Pspc19397.131ENSUMAG00000013993PSPC110097.131Ursus_maritimus
ENSMUSG00000021938Pspc17698.250ENSVPAG00000010029PSPC110098.250Vicugna_pacos
ENSMUSG00000021938Pspc110097.328ENSVVUG00000006414PSPC110097.416Vulpes_vulpes
ENSMUSG00000021938Pspc18365.306ENSXCOG00000017438pspc18374.212Xiphophorus_couchianus
ENSMUSG00000021938Pspc17474.499ENSXMAG00000007929pspc18374.499Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000976transcription regulatory region sequence-specific DNA binding21873635.IBAFunction
GO:0001650fibrillar center-ISOComponent
GO:0002218activation of innate immune response-ISOProcess
GO:0002376immune system process-IEAProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding19217333.IDAFunction
GO:0005515protein binding11591653.23308148.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005654nucleoplasm19217333.IDAComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005737cytoplasm-IEAComponent
GO:0042382paraspeckles19217333.22840402.IDAComponent
GO:0042752regulation of circadian rhythm22966205.IMPProcess
GO:0045087innate immune response-IEAProcess
GO:0045892negative regulation of transcription, DNA-templated22966205.IDAProcess
GO:0048511rhythmic process-IEAProcess
GO:0070888E-box binding22966205.IDAFunction

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