EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000021957 (Gene tree)
Gene ID: 21881
Gene Symbol: Tkt
Alias: p68
Full Name: transketolase
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 26362
Position: chr14: 30548359-30574720
Accession: 105992
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000223633	-	2438	-	-	- (aa)	-	-
ENSMUST00000225039	-	1401	-	-	- (aa)	-	-
ENSMUST00000022529	-	3223	-	ENSMUSP00000022529	623 (aa)	-	P40142
ENSMUST00000162356	-	465	-	ENSMUSP00000124485	42 (aa)	-	E0CY51
ENSMUST00000160406	-	597	-	-	- (aa)	-	-
ENSMUST00000225857	-	1962	-	-	- (aa)	-	-
ENSMUST00000160274	-	391	-	-	- (aa)	-	-
ENSMUST00000223717	-	1619	-	ENSMUSP00000153691	502 (aa)	-	A0A286YE28
ENSMUST00000160189	-	3159	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000021957's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00030	Pentose phosphate pathway	KEGG
mmu01100	Metabolic pathways	KEGG
mmu01200	Carbon metabolism	KEGG
mmu01230	Biosynthesis of amino acids	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000021957's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000021957	Tkt	99	96.000	ENSG00000163931	TKT	99	94.855	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000287	magnesium ion binding	-	ISO	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0004802	transketolase activity	12167708.	IDA	Function
GO:0004802	transketolase activity	-	ISO	Function
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005777	peroxisome	-	ISO	Component
GO:0005789	endoplasmic reticulum membrane	-	ISO	Component
GO:0006098	pentose-phosphate shunt	-	ISO	Process
GO:0009052	pentose-phosphate shunt, non-oxidative branch	-	ISO	Process
GO:0016604	nuclear body	-	ISO	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0016740	transferase activity	-	IEA	Function
GO:0030246	carbohydrate binding	-	ISO	Function
GO:0030976	thiamine pyrophosphate binding	-	ISO	Function
GO:0040008	regulation of growth	12167708.	IMP	Process
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0046166	glyceraldehyde-3-phosphate biosynthetic process	-	ISO	Process
GO:0046390	ribose phosphate biosynthetic process	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0048029	monosaccharide binding	-	ISO	Function
GO:0048037	cofactor binding	-	ISO	Function