EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000021998 (Gene tree)
Gene ID: 18826
Gene Symbol: Lcp1
Alias: D14Ertd310e|L-fimbrin|L-plastin|Pls2
Full Name: lymphocyte cytosolic protein 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 99742
Position: chr14: 75131101-75230842
Accession: 104808
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000131802	-	3594	XM_006518704	ENSMUSP00000117137	627 (aa)	XP_006518767	Q61233
ENSMUST00000149883	-	692	-	-	- (aa)	-	-
ENSMUST00000124499	-	2523	-	ENSMUSP00000121201	627 (aa)	-	Q61233
ENSMUST00000145303	-	3841	XM_006518699	ENSMUSP00000116271	627 (aa)	XP_006518762	Q61233
ENSMUST00000143539	-	356	-	ENSMUSP00000118721	76 (aa)	-	D3YZ25
ENSMUST00000130510	-	351	-	-	- (aa)	-	-
ENSMUST00000124608	-	3459	-	-	- (aa)	-	-
ENSMUST00000134114	-	628	-	ENSMUSP00000121376	121 (aa)	-	D3Z311
ENSMUST00000148609	-	1301	-	-	- (aa)	-	-
ENSMUST00000122840	-	678	-	ENSMUSP00000117984	101 (aa)	-	D3YVW8
ENSMUST00000125833	-	667	-	ENSMUSP00000116033	104 (aa)	-	D3Z7D9

Gene Model

Click here to download ENSMUSG00000021998's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000021998's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000021998	Lcp1	100	97.368	ENSG00000136167	LCP1	100	98.485	Homo_sapiens
ENSMUSG00000021998	Lcp1	100	79.904	ENSG00000102024	PLS3	99	79.904	Homo_sapiens
ENSMUSG00000021998	Lcp1	98	38.485	YDR129C	SAC6	98	38.923	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001725	stress fiber	-	ISO	Component
GO:0001726	ruffle	14756805.	IDA	Component
GO:0001726	ruffle	-	ISO	Component
GO:0001891	phagocytic cup	14756805.	IDA	Component
GO:0002102	podosome	-	ISO	Component
GO:0002286	T cell activation involved in immune response	-	ISO	Process
GO:0003779	actin binding	-	IEA	Function
GO:0005178	integrin binding	-	ISO	Function
GO:0005509	calcium ion binding	-	IEA	Function
GO:0005515	protein binding	11591653.14756805.15102471.	IPI	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	14756805.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005884	actin filament	21873635.	IBA	Component
GO:0005884	actin filament	14756805.	IDA	Component
GO:0005884	actin filament	7655078.	IDA	Component
GO:0005884	actin filament	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005925	focal adhesion	-	ISO	Component
GO:0009611	response to wounding	-	ISO	Process
GO:0010737	protein kinase A signaling	-	ISO	Process
GO:0015629	actin cytoskeleton	-	ISO	Component
GO:0016020	membrane	-	IEA	Component
GO:0016477	cell migration	-	ISO	Process
GO:0022617	extracellular matrix disassembly	-	ISO	Process
GO:0030054	cell junction	-	IEA	Component
GO:0030175	filopodium	-	ISO	Component
GO:0032432	actin filament bundle	21873635.	IBA	Component
GO:0032432	actin filament bundle	-	ISO	Component
GO:0033157	regulation of intracellular protein transport	-	ISO	Process
GO:0042802	identical protein binding	11591653.	IPI	Function
GO:0042995	cell projection	-	IEA	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0051015	actin filament binding	21873635.	IBA	Function
GO:0051015	actin filament binding	14756805.	IDA	Function
GO:0051015	actin filament binding	-	ISO	Function
GO:0051017	actin filament bundle assembly	21873635.	IBA	Process
GO:0051017	actin filament bundle assembly	14756805.	IDA	Process
GO:0051017	actin filament bundle assembly	-	ISO	Process
GO:0051020	GTPase binding	-	ISO	Function
GO:0051639	actin filament network formation	21873635.	IBA	Process
GO:0071803	positive regulation of podosome assembly	-	ISO	Process