EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000022000 (Gene tree)
Gene ID: 67302
Gene Symbol: Zc3h13
Alias: 2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618
Full Name: zinc finger CCCH type containing 13
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 60054 bases
Position: chr14:75284373-75344426
Accession: 1914552
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000022577	zf-CCCH	PF00642.24	3.6e-07	1	1
ENSMUSP00000153882	zf-CCCH	PF00642.24	3.6e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000228470	-	730	-	-	- (aa)	-	-
ENSMUST00000227049	-	6144	XM_006519445	ENSMUSP00000153882	1730 (aa)	XP_006519508	A0A2I3BPQ5
ENSMUST00000022577	-	6151	XM_006519447	ENSMUSP00000022577	1729 (aa)	XP_006519510	E9Q784
ENSMUST00000226417	-	534	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000022000's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000022000's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000022000	Zc3h13	50	80.023	ENSG00000123200	ZC3H13	98	93.805	Homo_sapiens
ENSMUSG00000022000	Zc3h13	60	75.379	ENSAPLG00000002707	ZC3H13	68	78.143	Anas_platyrhynchos
ENSMUSG00000022000	Zc3h13	50	82.857	ENSCAFG00000004511	ZC3H13	52	83.028	Canis_familiaris
ENSMUSG00000022000	Zc3h13	50	82.877	ENSCAFG00020019269	ZC3H13	96	91.262	Canis_lupus_dingo
ENSMUSG00000022000	Zc3h13	50	79.608	ENSCHIG00000020072	ZC3H13	52	79.793	Capra_hircus
ENSMUSG00000022000	Zc3h13	50	80.565	ENSCCAG00000032728	ZC3H13	54	80.612	Cebus_capucinus
ENSMUSG00000022000	Zc3h13	57	90.265	ENSCHOG00000009724	ZC3H13	56	90.265	Choloepus_hoffmanni
ENSMUSG00000022000	Zc3h13	50	80.435	ENSDNOG00000005390	ZC3H13	52	80.597	Dasypus_novemcinctus
ENSMUSG00000022000	Zc3h13	50	81.714	ENSEASG00005017100	ZC3H13	52	81.307	Equus_asinus_asinus
ENSMUSG00000022000	Zc3h13	65	86.905	ENSECAG00000022843	ZC3H13	53	81.995	Equus_caballus
ENSMUSG00000022000	Zc3h13	50	81.714	ENSFCAG00000004877	ZC3H13	52	81.995	Felis_catus
ENSMUSG00000022000	Zc3h13	64	70.229	ENSGACG00000015166	zc3h13	56	54.951	Gasterosteus_aculeatus
ENSMUSG00000022000	Zc3h13	79	92.398	ENSJJAG00000019971	Zc3h13	52	83.871	Jaculus_jaculus
ENSMUSG00000022000	Zc3h13	78	62.369	ENSLACG00000003806	ZC3H13	51	60.175	Latimeria_chalumnae
ENSMUSG00000022000	Zc3h13	59	87.140	ENSMLEG00000039387	ZC3H13	70	92.430	Mandrillus_leucophaeus
ENSMUSG00000022000	Zc3h13	100	98.274	MGP_CAROLIEiJ_G0019512	Zc3h13	100	98.274	Mus_caroli
ENSMUSG00000022000	Zc3h13	100	97.575	MGP_PahariEiJ_G0030530	Zc3h13	100	97.575	Mus_pahari
ENSMUSG00000022000	Zc3h13	100	98.844	MGP_SPRETEiJ_G0020407	Zc3h13	100	98.844	Mus_spretus
ENSMUSG00000022000	Zc3h13	50	80.457	ENSMPUG00000001602	ZC3H13	51	81.651	Mustela_putorius_furo
ENSMUSG00000022000	Zc3h13	50	78.449	ENSMLUG00000006920	ZC3H13	52	78.784	Myotis_lucifugus
ENSMUSG00000022000	Zc3h13	50	81.881	ENSODEG00000005178	ZC3H13	53	82.048	Octodon_degus
ENSMUSG00000022000	Zc3h13	79	88.716	ENSOCUG00000015173	ZC3H13	52	83.659	Oryctolagus_cuniculus
ENSMUSG00000022000	Zc3h13	50	79.263	ENSOARG00000007790	ZC3H13	52	75.986	Ovis_aries
ENSMUSG00000022000	Zc3h13	50	82.057	ENSPPRG00000005440	ZC3H13	52	82.339	Panthera_pardus
ENSMUSG00000022000	Zc3h13	50	80.457	ENSPTIG00000014867	ZC3H13	53	80.734	Panthera_tigris_altaica
ENSMUSG00000022000	Zc3h13	76	90.726	ENSPCAG00000001146	ZC3H13	65	91.045	Procavia_capensis
ENSMUSG00000022000	Zc3h13	67	88.136	ENSPVAG00000012353	ZC3H13	69	86.667	Pteropus_vampyrus
ENSMUSG00000022000	Zc3h13	50	94.361	ENSRNOG00000011237	Zc3h13	50	94.361	Rattus_norvegicus
ENSMUSG00000022000	Zc3h13	50	80.023	ENSRBIG00000010463	ZC3H13	53	80.181	Rhinopithecus_bieti
ENSMUSG00000022000	Zc3h13	50	79.932	ENSSBOG00000027228	ZC3H13	53	79.977	Saimiri_boliviensis_boliviensis
ENSMUSG00000022000	Zc3h13	50	80.941	ENSSSCG00000009414	ZC3H13	52	81.221	Sus_scrofa
ENSMUSG00000022000	Zc3h13	79	81.618	ENSTTRG00000003611	ZC3H13	84	81.336	Tursiops_truncatus
ENSMUSG00000022000	Zc3h13	50	80.000	ENSUMAG00000016220	ZC3H13	52	79.817	Ursus_maritimus
ENSMUSG00000022000	Zc3h13	84	90.000	ENSVPAG00000005179	ZC3H13	53	90.265	Vicugna_pacos
ENSMUSG00000022000	Zc3h13	80	89.535	ENSVVUG00000028395	ZC3H13	86	89.341	Vulpes_vulpes
ENSMUSG00000022000	Zc3h13	51	52.130	ENSXETG00000014637	zc3h13	79	58.031	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0007275	multicellular organism development	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0016607	nuclear speck	29547716.	IDA	Component
GO:0036396	RNA N6-methyladenosine methyltransferase complex	29547716.	IDA	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0080009	mRNA methylation	29547716.	IDA	Process
GO:2000036	regulation of stem cell population maintenance	29547716.	IMP	Process