EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000022141 (Gene tree)
Gene ID: 71175
Gene Symbol: Nipbl
Alias: 4921518A06Rik|4933421G18Rik
Full Name: NIPBL cohesin loading factor
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 153847
Position: chr15: 8290617-8444463
Accession: 1913976
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000052965	-	9423	XM_006519994	ENSMUSP00000059385	2798 (aa)	XP_006520057	Q6KCD5

Gene Model

Click here to download ENSMUSG00000022141's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000022141's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000022141	Nipbl	100	96.683	ENSG00000164190	NIPBL	100	96.683	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000228	nuclear chromosome	21873635.	IBA	Component
GO:0000785	chromatin	21873635.	IBA	Component
GO:0000785	chromatin	23920377.	IDA	Component
GO:0000790	nuclear chromatin	21873635.	IBA	Component
GO:0003007	heart morphogenesis	21873635.	IBA	Process
GO:0003007	heart morphogenesis	-	ISO	Process
GO:0003151	outflow tract morphogenesis	-	ISO	Process
GO:0003682	chromatin binding	21873635.	IBA	Function
GO:0003682	chromatin binding	20720539.	IDA	Function
GO:0005515	protein binding	28041881.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	29094699.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0006302	double-strand break repair	21873635.	IBA	Process
GO:0006357	regulation of transcription by RNA polymerase II	28041881.	IMP	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0007064	mitotic sister chromatid cohesion	21873635.	IBA	Process
GO:0007064	mitotic sister chromatid cohesion	-	ISO	Process
GO:0007076	mitotic chromosome condensation	21873635.	IBA	Process
GO:0007275	multicellular organism development	-	IEA	Process
GO:0007420	brain development	21873635.	IBA	Process
GO:0007420	brain development	-	ISO	Process
GO:0007507	heart development	21873635.	IBA	Process
GO:0007507	heart development	19763162.	IMP	Process
GO:0007605	sensory perception of sound	-	ISO	Process
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0010468	regulation of gene expression	-	IEA	Process
GO:0019827	stem cell population maintenance	20720539.	IMP	Process
GO:0031065	positive regulation of histone deacetylation	-	ISO	Process
GO:0032039	integrator complex	28041881.	IDA	Component
GO:0032116	SMC loading complex	-	ISO	Component
GO:0034087	establishment of mitotic sister chromatid cohesion	21873635.	IBA	Process
GO:0034088	maintenance of mitotic sister chromatid cohesion	-	ISO	Process
GO:0034613	cellular protein localization	-	ISO	Process
GO:0035115	embryonic forelimb morphogenesis	-	ISO	Process
GO:0035136	forelimb morphogenesis	-	ISO	Process
GO:0035261	external genitalia morphogenesis	-	ISO	Process
GO:0036033	mediator complex binding	20720539.	IDA	Function
GO:0040018	positive regulation of multicellular organism growth	19763162.	IMP	Process
GO:0042471	ear morphogenesis	-	ISO	Process
GO:0042634	regulation of hair cycle	-	ISO	Process
GO:0042826	histone deacetylase binding	-	ISO	Function
GO:0045444	fat cell differentiation	19763162.	IMP	Process
GO:0045778	positive regulation of ossification	19763162.	IMP	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	23920377.	IMP	Process
GO:0045995	regulation of embryonic development	-	ISO	Process
GO:0047485	protein N-terminus binding	-	ISO	Function
GO:0048557	embryonic digestive tract morphogenesis	-	ISO	Process
GO:0048589	developmental growth	-	ISO	Process
GO:0048592	eye morphogenesis	-	ISO	Process
GO:0048638	regulation of developmental growth	-	ISO	Process
GO:0048701	embryonic cranial skeleton morphogenesis	19763162.	IMP	Process
GO:0048703	embryonic viscerocranium morphogenesis	21873635.	IBA	Process
GO:0048703	embryonic viscerocranium morphogenesis	19763162.	IMP	Process
GO:0050890	cognition	-	ISO	Process
GO:0060325	face morphogenesis	-	ISO	Process
GO:0061010	gall bladder development	-	ISO	Process
GO:0061038	uterus morphogenesis	-	ISO	Process
GO:0070087	chromo shadow domain binding	-	ISO	Function
GO:0070550	rDNA condensation	21873635.	IBA	Process
GO:0071169	establishment of protein localization to chromatin	21873635.	IBA	Process
GO:0071481	cellular response to X-ray	-	ISO	Process
GO:0071733	transcriptional activation by promoter-enhancer looping	21873635.	IBA	Process
GO:0071921	cohesin loading	29094699.	IMP	Process
GO:0071921	cohesin loading	-	ISO	Process
GO:0090694	Scc2-Scc4 cohesin loading complex	21873635.	IBA	Component
GO:0090694	Scc2-Scc4 cohesin loading complex	-	ISO	Component
GO:1905406	positive regulation of mitotic cohesin loading	21873635.	IBA	Process
GO:1990414	replication-born double-strand break repair via sister chromatid exchange	21873635.	IBA	Process
GO:2001224	positive regulation of neuron migration	28041881.	IMP	Process