EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000022185 (Gene tree)
Gene ID: 56215
Gene Symbol: Acin1
Alias: 2610036I19Rik|2610510L13Rik|Acinus
Full Name: apoptotic chromatin condensation inducer 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 44771 bases
Position: chr14:54642161-54686931
Accession: 1891824
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000119080	SAP	PF02037.27	1.3e-07	1	1
ENSMUSP00000107109	SAP	PF02037.27	1.3e-07	1	1
ENSMUSP00000022793	SAP	PF02037.27	1.4e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000124271	-	1125	-	-	- (aa)	-	-
ENSMUST00000167015	-	1746	-	ENSMUSP00000125776	581 (aa)	-	Q9JIX8
ENSMUST00000152773	-	844	-	-	- (aa)	-	-
ENSMUST00000123875	-	696	-	ENSMUSP00000117210	221 (aa)	-	B8JJ90
ENSMUST00000125265	-	947	-	ENSMUSP00000120445	256 (aa)	-	B8JJ89
ENSMUST00000132242	-	452	-	-	- (aa)	-	-
ENSMUST00000170299	-	570	-	-	- (aa)	-	-
ENSMUST00000022793	-	4735	XM_006519296	ENSMUSP00000022793	1338 (aa)	XP_006519359	Q9JIX8
ENSMUST00000150371	-	2494	XM_006519301	ENSMUSP00000118069	634 (aa)	XP_006519364	B8JJ91
ENSMUST00000022794	-	2365	-	ENSMUSP00000022794	580 (aa)	-	B8JJ92
ENSMUST00000137763	-	369	-	-	- (aa)	-	-
ENSMUST00000151487	-	635	-	-	- (aa)	-	-
ENSMUST00000134808	-	2555	-	-	- (aa)	-	-
ENSMUST00000149713	-	460	-	-	- (aa)	-	-
ENSMUST00000147714	-	4383	-	ENSMUSP00000119080	1272 (aa)	-	F6RJ39
ENSMUST00000141453	-	2381	XM_006519308	ENSMUSP00000116664	552 (aa)	XP_006519371	Q52KR6
ENSMUST00000136909	-	496	-	-	- (aa)	-	-
ENSMUST00000129700	-	695	-	-	- (aa)	-	-
ENSMUST00000125767	-	696	-	-	- (aa)	-	-
ENSMUST00000133706	-	803	-	-	- (aa)	-	-
ENSMUST00000148754	-	2373	-	ENSMUSP00000122003	581 (aa)	-	Q9JIX8
ENSMUST00000167495	-	1352	-	-	- (aa)	-	-
ENSMUST00000126166	-	2369	XM_006519304	ENSMUSP00000114546	565 (aa)	XP_006519367	Q9JIX8
ENSMUST00000141993	-	1001	-	-	- (aa)	-	-
ENSMUST00000138321	-	807	-	ENSMUSP00000119326	141 (aa)	-	F6Q8C0
ENSMUST00000111484	-	4048	XM_006519298	ENSMUSP00000107109	1298 (aa)	XP_006519361	Q9JIX8

Gene Model

Click here to download ENSMUSG00000022185's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu03015	mRNA surveillance pathway	KEGG
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000022185's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000022185	Acin1	100	85.364	ENSG00000100813	ACIN1	96	90.860	Homo_sapiens
ENSMUSG00000022185	Acin1	100	85.037	ENSAMEG00000007576	ACIN1	93	83.427	Ailuropoda_melanoleuca
ENSMUSG00000022185	Acin1	100	83.555	ENSANAG00000034343	ACIN1	92	83.626	Aotus_nancymaae
ENSMUSG00000022185	Acin1	100	85.279	ENSBTAG00000011571	ACIN1	99	85.125	Bos_taurus
ENSMUSG00000022185	Acin1	100	84.359	ENSCJAG00000008076	ACIN1	93	83.907	Callithrix_jacchus
ENSMUSG00000022185	Acin1	100	83.828	ENSCAFG00000011427	ACIN1	93	84.054	Canis_familiaris
ENSMUSG00000022185	Acin1	100	83.754	ENSCAFG00020007637	ACIN1	93	83.974	Canis_lupus_dingo
ENSMUSG00000022185	Acin1	100	84.833	ENSCHIG00000017602	ACIN1	93	84.659	Capra_hircus
ENSMUSG00000022185	Acin1	100	83.754	ENSTSYG00000011584	ACIN1	93	83.093	Carlito_syrichta
ENSMUSG00000022185	Acin1	99	84.384	ENSCPOG00000027234	ACIN1	92	83.442	Cavia_porcellus
ENSMUSG00000022185	Acin1	100	84.261	ENSCCAG00000029776	ACIN1	93	83.480	Cebus_capucinus
ENSMUSG00000022185	Acin1	100	85.502	ENSCATG00000044489	ACIN1	93	85.141	Cercocebus_atys
ENSMUSG00000022185	Acin1	99	83.496	ENSCLAG00000010588	ACIN1	100	84.114	Chinchilla_lanigera
ENSMUSG00000022185	Acin1	100	84.633	ENSCSAG00000016098	ACIN1	93	84.202	Chlorocebus_sabaeus
ENSMUSG00000022185	Acin1	60	90.476	ENSCHOG00000006414	ACIN1	72	90.476	Choloepus_hoffmanni
ENSMUSG00000022185	Acin1	100	85.279	ENSCANG00000032999	ACIN1	93	84.900	Colobus_angolensis_palliatus
ENSMUSG00000022185	Acin1	100	90.462	ENSCGRG00001010945	Acin1	100	91.294	Cricetulus_griseus_chok1gshd
ENSMUSG00000022185	Acin1	100	88.450	ENSCGRG00000012504	Acin1	100	87.779	Cricetulus_griseus_crigri
ENSMUSG00000022185	Acin1	99	81.319	ENSDNOG00000047667	ACIN1	92	81.025	Dasypus_novemcinctus
ENSMUSG00000022185	Acin1	95	91.262	ENSETEG00000000033	ACIN1	84	100.000	Echinops_telfairi
ENSMUSG00000022185	Acin1	100	84.770	ENSEASG00005011704	ACIN1	93	84.270	Equus_asinus_asinus
ENSMUSG00000022185	Acin1	100	84.547	ENSECAG00000021097	ACIN1	93	84.189	Equus_caballus
ENSMUSG00000022185	Acin1	100	84.039	ENSFCAG00000002332	ACIN1	93	83.561	Felis_catus
ENSMUSG00000022185	Acin1	100	83.062	ENSFDAG00000011979	ACIN1	92	82.853	Fukomys_damarensis
ENSMUSG00000022185	Acin1	100	84.480	ENSGGOG00000007403	ACIN1	92	84.023	Gorilla_gorilla
ENSMUSG00000022185	Acin1	99	84.519	ENSHGLG00000018997	-	92	83.361	Heterocephalus_glaber_female
ENSMUSG00000022185	Acin1	99	80.556	ENSHGLG00100018921	-	92	78.773	Heterocephalus_glaber_male
ENSMUSG00000022185	Acin1	51	69.298	ENSHCOG00000000814	acin1b	59	75.000	Hippocampus_comes
ENSMUSG00000022185	Acin1	99	83.140	ENSSTOG00000007169	ACIN1	92	83.804	Ictidomys_tridecemlineatus
ENSMUSG00000022185	Acin1	100	83.185	ENSLAFG00000003679	ACIN1	93	82.800	Loxodonta_africana
ENSMUSG00000022185	Acin1	100	85.502	ENSMFAG00000044437	ACIN1	93	85.141	Macaca_fascicularis
ENSMUSG00000022185	Acin1	100	85.502	ENSMMUG00000012979	ACIN1	93	85.141	Macaca_mulatta
ENSMUSG00000022185	Acin1	100	84.387	ENSMNEG00000035938	ACIN1	93	83.936	Macaca_nemestrina
ENSMUSG00000022185	Acin1	100	85.353	ENSMLEG00000036983	ACIN1	93	84.980	Mandrillus_leucophaeus
ENSMUSG00000022185	Acin1	50	94.444	ENSMAUG00000000504	Acin1	75	94.845	Mesocricetus_auratus
ENSMUSG00000022185	Acin1	100	85.799	ENSMICG00000002575	ACIN1	93	85.301	Microcebus_murinus
ENSMUSG00000022185	Acin1	96	67.014	ENSMODG00000005083	ACIN1	97	68.127	Monodelphis_domestica
ENSMUSG00000022185	Acin1	100	97.907	MGP_CAROLIEiJ_G0019267	Acin1	100	97.907	Mus_caroli
ENSMUSG00000022185	Acin1	100	95.366	MGP_PahariEiJ_G0030286	Acin1	100	95.358	Mus_pahari
ENSMUSG00000022185	Acin1	100	98.580	MGP_SPRETEiJ_G0020157	Acin1	100	98.580	Mus_spretus
ENSMUSG00000022185	Acin1	99	83.076	ENSMPUG00000006822	ACIN1	92	84.149	Mustela_putorius_furo
ENSMUSG00000022185	Acin1	53	54.217	ENSNBRG00000017740	acin1a	65	82.178	Neolamprologus_brichardi
ENSMUSG00000022185	Acin1	100	84.866	ENSNLEG00000014920	ACIN1	93	84.375	Nomascus_leucogenys
ENSMUSG00000022185	Acin1	83	66.078	ENSMEUG00000015219	ACIN1	99	67.343	Notamacropus_eugenii
ENSMUSG00000022185	Acin1	86	94.891	ENSOPRG00000016402	ACIN1	86	91.549	Ochotona_princeps
ENSMUSG00000022185	Acin1	92	83.981	ENSOCUG00000001678	ACIN1	93	84.206	Oryctolagus_cuniculus
ENSMUSG00000022185	Acin1	99	83.645	ENSOGAG00000012605	ACIN1	91	83.534	Otolemur_garnettii
ENSMUSG00000022185	Acin1	100	83.370	ENSOARG00000019368	ACIN1	92	82.438	Ovis_aries
ENSMUSG00000022185	Acin1	100	84.644	ENSPPAG00000041392	ACIN1	93	83.894	Pan_paniscus
ENSMUSG00000022185	Acin1	100	83.816	ENSPPRG00000006713	ACIN1	92	83.079	Panthera_pardus
ENSMUSG00000022185	Acin1	100	84.050	ENSPTIG00000021540	ACIN1	92	84.042	Panthera_tigris_altaica
ENSMUSG00000022185	Acin1	100	84.866	ENSPTRG00000006159	ACIN1	93	84.375	Pan_troglodytes
ENSMUSG00000022185	Acin1	100	85.130	ENSPANG00000019644	ACIN1	93	84.819	Papio_anubis
ENSMUSG00000022185	Acin1	92	69.674	ENSPCIG00000027763	ACIN1	92	73.236	Phascolarctos_cinereus
ENSMUSG00000022185	Acin1	100	83.210	ENSPPYG00000005657	ACIN1	92	82.986	Pongo_abelii
ENSMUSG00000022185	Acin1	88	96.183	ENSPCAG00000006599	ACIN1	92	74.515	Procavia_capensis
ENSMUSG00000022185	Acin1	100	86.171	ENSPCOG00000002308	ACIN1	93	85.382	Propithecus_coquereli
ENSMUSG00000022185	Acin1	99	83.780	ENSPVAG00000013806	ACIN1	92	83.039	Pteropus_vampyrus
ENSMUSG00000022185	Acin1	100	92.767	ENSRNOG00000013533	Acin1	100	92.692	Rattus_norvegicus
ENSMUSG00000022185	Acin1	100	83.856	ENSRBIG00000031308	ACIN1	93	82.946	Rhinopithecus_bieti
ENSMUSG00000022185	Acin1	100	84.993	ENSRROG00000003676	ACIN1	93	84.591	Rhinopithecus_roxellana
ENSMUSG00000022185	Acin1	100	84.308	ENSSBOG00000032127	ACIN1	93	83.533	Saimiri_boliviensis_boliviensis
ENSMUSG00000022185	Acin1	99	83.966	ENSSSCG00000002034	ACIN1	92	84.692	Sus_scrofa
ENSMUSG00000022185	Acin1	54	92.308	ENSTBEG00000016605	-	79	100.000	Tupaia_belangeri
ENSMUSG00000022185	Acin1	92	84.380	ENSUAMG00000024475	ACIN1	99	84.622	Ursus_americanus
ENSMUSG00000022185	Acin1	92	84.486	ENSUMAG00000014156	ACIN1	100	85.301	Ursus_maritimus
ENSMUSG00000022185	Acin1	100	84.250	ENSVVUG00000019885	ACIN1	93	84.591	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005634	nucleus	10490026.	ISS	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005730	nucleolus	10716735.	IDA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0006915	apoptotic process	10490026.	ISS	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0030263	apoptotic chromosome condensation	-	ISO	Process
GO:0035145	exon-exon junction complex	-	ISO	Component
GO:0043065	positive regulation of apoptotic process	-	ISO	Process
GO:0048025	negative regulation of mRNA splicing, via spliceosome	-	ISO	Process
GO:0061574	ASAP complex	-	ISO	Component