EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000022201 (Gene tree)
Gene ID: 22763
Gene Symbol: Zfr
Alias: C920030H05Rik
Full Name: zinc finger RNA binding protein
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 67853 bases
Position: chr15:12117831-12185683
Accession: 1341890
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000118911	DZF	PF07528.14	1.6e-69	1	1
ENSMUSP00000119251	DZF	PF07528.14	8.3e-66	1	1
ENSMUSP00000118911	zf-met	PF12874.7	4.5e-21	1	3
ENSMUSP00000118911	zf-met	PF12874.7	4.5e-21	2	3
ENSMUSP00000118911	zf-met	PF12874.7	4.5e-21	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000156752	-	897	-	ENSMUSP00000119251	299 (aa)	-	F6QJP7
ENSMUST00000147492	-	666	-	-	- (aa)	-	-
ENSMUST00000157034	-	939	-	ENSMUSP00000119524	44 (aa)	-	F6RTK9
ENSMUST00000128475	-	1115	-	ENSMUSP00000117207	351 (aa)	-	D3Z5G4
ENSMUST00000155054	-	565	-	ENSMUSP00000114992	115 (aa)	-	F6V459
ENSMUST00000228196	-	812	-	-	- (aa)	-	-
ENSMUST00000140787	-	863	-	-	- (aa)	-	-
ENSMUST00000122941	-	4850	XM_006520057	ENSMUSP00000118911	1074 (aa)	XP_006520120	O88532
ENSMUST00000124621	-	513	-	-	- (aa)	-	-
ENSMUST00000134277	-	633	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000022201's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000022201's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000022201	Zfr	99	53.526	ENSMUSG00000032178	Ilf3	92	47.097
ENSMUSG00000022201	Zfr	99	53.443	ENSMUSG00000026915	Strbp	97	46.825
ENSMUSG00000022201	Zfr	99	55.853	ENSMUSG00000034949	Zfr2	90	51.534

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000022201	Zfr	100	99.430	ENSG00000056097	ZFR	99	98.889	Homo_sapiens
ENSMUSG00000022201	Zfr	100	81.197	ENSAPOG00000009740	zfr	100	71.863	Acanthochromis_polyacanthus
ENSMUSG00000022201	Zfr	100	99.430	ENSAMEG00000006184	ZFR	100	98.045	Ailuropoda_melanoleuca
ENSMUSG00000022201	Zfr	94	84.656	ENSACIG00000015926	zfr	100	70.669	Amphilophus_citrinellus
ENSMUSG00000022201	Zfr	100	80.912	ENSAOCG00000013876	zfr	100	74.771	Amphiprion_ocellaris
ENSMUSG00000022201	Zfr	100	80.912	ENSAPEG00000024383	zfr	100	77.422	Amphiprion_percula
ENSMUSG00000022201	Zfr	100	79.772	ENSATEG00000010271	zfr	100	77.339	Anabas_testudineus
ENSMUSG00000022201	Zfr	87	89.542	ENSAPLG00000015627	-	100	85.150	Anas_platyrhynchos
ENSMUSG00000022201	Zfr	99	91.275	ENSACAG00000007880	ZFR	100	87.662	Anolis_carolinensis
ENSMUSG00000022201	Zfr	100	99.430	ENSANAG00000023333	ZFR	100	98.045	Aotus_nancymaae
ENSMUSG00000022201	Zfr	94	84.656	ENSACLG00000016832	zfr	100	70.826	Astatotilapia_calliptera
ENSMUSG00000022201	Zfr	99	78.859	ENSAMXG00000019511	zfr	100	79.478	Astyanax_mexicanus
ENSMUSG00000022201	Zfr	100	99.430	ENSBTAG00000008414	ZFR	100	98.045	Bos_taurus
ENSMUSG00000022201	Zfr	100	99.430	ENSCJAG00000018740	ZFR	100	98.138	Callithrix_jacchus
ENSMUSG00000022201	Zfr	100	99.145	ENSCAFG00000018886	ZFR	100	97.963	Canis_familiaris
ENSMUSG00000022201	Zfr	100	99.430	ENSCAFG00020016859	-	100	98.045	Canis_lupus_dingo
ENSMUSG00000022201	Zfr	100	99.430	ENSCHIG00000007710	ZFR	100	97.858	Capra_hircus
ENSMUSG00000022201	Zfr	99	97.651	ENSTSYG00000010670	ZFR	99	96.935	Carlito_syrichta
ENSMUSG00000022201	Zfr	99	85.570	ENSCAPG00000015655	ZFR	100	74.660	Cavia_aperea
ENSMUSG00000022201	Zfr	99	96.980	ENSCPOG00000000862	ZFR	100	91.926	Cavia_porcellus
ENSMUSG00000022201	Zfr	100	99.430	ENSCCAG00000024473	ZFR	100	97.952	Cebus_capucinus
ENSMUSG00000022201	Zfr	100	99.430	ENSCATG00000038311	ZFR	100	97.952	Cercocebus_atys
ENSMUSG00000022201	Zfr	99	96.980	ENSCLAG00000007408	ZFR	100	97.374	Chinchilla_lanigera
ENSMUSG00000022201	Zfr	100	99.430	ENSCSAG00000017180	ZFR	100	97.765	Chlorocebus_sabaeus
ENSMUSG00000022201	Zfr	87	96.393	ENSCHOG00000003848	ZFR	100	77.735	Choloepus_hoffmanni
ENSMUSG00000022201	Zfr	100	97.151	ENSCPBG00000024211	ZFR	100	91.466	Chrysemys_picta_bellii
ENSMUSG00000022201	Zfr	100	99.430	ENSCANG00000017807	ZFR	100	97.765	Colobus_angolensis_palliatus
ENSMUSG00000022201	Zfr	100	100.000	ENSCGRG00001016009	Zfr	100	98.883	Cricetulus_griseus_chok1gshd
ENSMUSG00000022201	Zfr	99	97.651	ENSCGRG00000001228	Zfr	99	96.777	Cricetulus_griseus_crigri
ENSMUSG00000022201	Zfr	99	79.195	ENSCSEG00000009224	zfr	100	74.473	Cynoglossus_semilaevis
ENSMUSG00000022201	Zfr	100	76.554	ENSCSEG00000011169	ZFR	99	75.298	Cynoglossus_semilaevis
ENSMUSG00000022201	Zfr	99	78.188	ENSCVAG00000016494	zfr	100	73.754	Cyprinodon_variegatus
ENSMUSG00000022201	Zfr	100	83.286	ENSDARG00000027109	zfr	100	78.760	Danio_rerio
ENSMUSG00000022201	Zfr	100	99.430	ENSDNOG00000008852	ZFR	100	97.026	Dasypus_novemcinctus
ENSMUSG00000022201	Zfr	100	99.430	ENSDORG00000016643	Zfr	100	98.045	Dipodomys_ordii
ENSMUSG00000022201	Zfr	100	97.436	ENSETEG00000008937	ZFR	100	91.993	Echinops_telfairi
ENSMUSG00000022201	Zfr	99	62.081	ENSEBUG00000012503	-	99	56.918	Eptatretus_burgeri
ENSMUSG00000022201	Zfr	100	99.145	ENSEASG00005007104	ZFR	100	97.765	Equus_asinus_asinus
ENSMUSG00000022201	Zfr	100	99.430	ENSECAG00000012851	ZFR	99	97.614	Equus_caballus
ENSMUSG00000022201	Zfr	100	96.866	ENSEEUG00000014206	ZFR	94	84.236	Erinaceus_europaeus
ENSMUSG00000022201	Zfr	99	73.355	ENSELUG00000022743	zfr	99	68.647	Esox_lucius
ENSMUSG00000022201	Zfr	100	99.430	ENSFCAG00000000354	ZFR	100	98.138	Felis_catus
ENSMUSG00000022201	Zfr	99	93.289	ENSFALG00000002149	ZFR	100	89.944	Ficedula_albicollis
ENSMUSG00000022201	Zfr	99	97.315	ENSFDAG00000012993	ZFR	100	96.890	Fukomys_damarensis
ENSMUSG00000022201	Zfr	99	76.174	ENSFHEG00000012064	zfr	99	71.065	Fundulus_heteroclitus
ENSMUSG00000022201	Zfr	94	83.750	ENSGMOG00000003967	zfr	94	82.432	Gadus_morhua
ENSMUSG00000022201	Zfr	100	97.436	ENSGALG00000003235	-	100	91.713	Gallus_gallus
ENSMUSG00000022201	Zfr	100	96.296	ENSGALG00000034488	-	100	89.758	Gallus_gallus
ENSMUSG00000022201	Zfr	99	62.048	ENSGAFG00000016229	zfr	100	60.531	Gambusia_affinis
ENSMUSG00000022201	Zfr	99	77.181	ENSGACG00000005045	zfr	100	73.219	Gasterosteus_aculeatus
ENSMUSG00000022201	Zfr	100	97.151	ENSGAGG00000013544	ZFR	99	90.784	Gopherus_agassizii
ENSMUSG00000022201	Zfr	100	99.145	ENSGGOG00000016302	ZFR	100	97.765	Gorilla_gorilla
ENSMUSG00000022201	Zfr	100	99.145	ENSHGLG00000008088	ZFR	100	97.393	Heterocephalus_glaber_female
ENSMUSG00000022201	Zfr	99	96.980	ENSHGLG00100016776	ZFR	99	97.276	Heterocephalus_glaber_male
ENSMUSG00000022201	Zfr	100	82.051	ENSHCOG00000001548	zfr	100	75.663	Hippocampus_comes
ENSMUSG00000022201	Zfr	100	83.427	ENSIPUG00000008192	zfr	100	79.254	Ictalurus_punctatus
ENSMUSG00000022201	Zfr	100	97.020	ENSSTOG00000008742	ZFR	100	97.020	Ictidomys_tridecemlineatus
ENSMUSG00000022201	Zfr	99	97.651	ENSJJAG00000023064	Zfr	98	92.250	Jaculus_jaculus
ENSMUSG00000022201	Zfr	100	81.481	ENSKMAG00000009468	zfr	99	76.342	Kryptolebias_marmoratus
ENSMUSG00000022201	Zfr	100	83.191	ENSLBEG00000010783	zfr	100	76.471	Labrus_bergylta
ENSMUSG00000022201	Zfr	100	81.564	ENSLACG00000000831	ZFR	100	79.001	Latimeria_chalumnae
ENSMUSG00000022201	Zfr	100	84.239	ENSLOCG00000006727	zfr	100	79.982	Lepisosteus_oculatus
ENSMUSG00000022201	Zfr	99	97.651	ENSLAFG00000002308	ZFR	100	97.243	Loxodonta_africana
ENSMUSG00000022201	Zfr	100	97.020	ENSMFAG00000042691	ZFR	100	97.020	Macaca_fascicularis
ENSMUSG00000022201	Zfr	100	99.430	ENSMMUG00000001317	ZFR	100	97.952	Macaca_mulatta
ENSMUSG00000022201	Zfr	100	99.430	ENSMNEG00000029441	ZFR	100	97.952	Macaca_nemestrina
ENSMUSG00000022201	Zfr	99	97.651	ENSMLEG00000028503	ZFR	100	97.769	Mandrillus_leucophaeus
ENSMUSG00000022201	Zfr	100	80.057	ENSMAMG00000017351	zfr	100	76.627	Mastacembelus_armatus
ENSMUSG00000022201	Zfr	94	84.656	ENSMZEG00005021243	zfr	100	70.826	Maylandia_zebra
ENSMUSG00000022201	Zfr	96	77.348	ENSMGAG00000002841	ZFR	99	77.444	Meleagris_gallopavo
ENSMUSG00000022201	Zfr	100	100.000	ENSMAUG00000000976	Zfr	100	98.138	Mesocricetus_auratus
ENSMUSG00000022201	Zfr	100	99.145	ENSMICG00000001244	ZFR	100	97.765	Microcebus_murinus
ENSMUSG00000022201	Zfr	100	100.000	ENSMOCG00000018630	Zfr	100	98.696	Microtus_ochrogaster
ENSMUSG00000022201	Zfr	99	80.201	ENSMMOG00000012585	zfr	90	75.687	Mola_mola
ENSMUSG00000022201	Zfr	100	99.145	ENSMODG00000020412	ZFR	100	94.320	Monodelphis_domestica
ENSMUSG00000022201	Zfr	99	78.523	ENSMALG00000007123	zfr	94	84.932	Monopterus_albus
ENSMUSG00000022201	Zfr	100	100.000	MGP_CAROLIEiJ_G0019681	Zfr	100	100.000	Mus_caroli
ENSMUSG00000022201	Zfr	100	100.000	MGP_PahariEiJ_G0016057	Zfr	100	99.664	Mus_pahari
ENSMUSG00000022201	Zfr	100	100.000	MGP_SPRETEiJ_G0020574	Zfr	100	99.664	Mus_spretus
ENSMUSG00000022201	Zfr	52	100.000	ENSMPUG00000015194	-	84	100.000	Mustela_putorius_furo
ENSMUSG00000022201	Zfr	100	99.145	ENSMPUG00000015193	-	99	97.332	Mustela_putorius_furo
ENSMUSG00000022201	Zfr	99	97.651	ENSMLUG00000011797	ZFR	100	97.005	Myotis_lucifugus
ENSMUSG00000022201	Zfr	100	99.715	ENSNGAG00000018328	Zfr	100	98.324	Nannospalax_galili
ENSMUSG00000022201	Zfr	94	84.656	ENSNBRG00000008378	zfr	100	73.617	Neolamprologus_brichardi
ENSMUSG00000022201	Zfr	99	97.651	ENSNLEG00000014098	ZFR	100	97.672	Nomascus_leucogenys
ENSMUSG00000022201	Zfr	87	99.016	ENSMEUG00000010225	ZFR	100	87.840	Notamacropus_eugenii
ENSMUSG00000022201	Zfr	98	97.965	ENSOPRG00000016756	ZFR	84	99.200	Ochotona_princeps
ENSMUSG00000022201	Zfr	99	96.980	ENSODEG00000001990	ZFR	100	97.179	Octodon_degus
ENSMUSG00000022201	Zfr	99	79.480	ENSONIG00000013960	zfr	100	60.478	Oreochromis_niloticus
ENSMUSG00000022201	Zfr	99	94.631	ENSOANG00000014434	ZFR	99	93.398	Ornithorhynchus_anatinus
ENSMUSG00000022201	Zfr	100	99.430	ENSOCUG00000016737	ZFR	100	97.579	Oryctolagus_cuniculus
ENSMUSG00000022201	Zfr	100	80.966	ENSORLG00000017243	zfr	99	75.298	Oryzias_latipes
ENSMUSG00000022201	Zfr	100	80.966	ENSORLG00020014823	zfr	99	75.298	Oryzias_latipes_hni
ENSMUSG00000022201	Zfr	100	80.966	ENSORLG00015005801	zfr	99	75.298	Oryzias_latipes_hsok
ENSMUSG00000022201	Zfr	100	81.534	ENSOMEG00000003336	zfr	99	76.379	Oryzias_melastigma
ENSMUSG00000022201	Zfr	100	99.430	ENSOGAG00000015117	ZFR	100	95.349	Otolemur_garnettii
ENSMUSG00000022201	Zfr	99	97.651	ENSOARG00000012233	ZFR	100	96.896	Ovis_aries
ENSMUSG00000022201	Zfr	99	97.315	ENSPPAG00000027447	ZFR	99	97.476	Pan_paniscus
ENSMUSG00000022201	Zfr	100	99.430	ENSPPRG00000008253	ZFR	100	98.231	Panthera_pardus
ENSMUSG00000022201	Zfr	99	97.651	ENSPTIG00000010038	ZFR	99	95.238	Panthera_tigris_altaica
ENSMUSG00000022201	Zfr	100	99.430	ENSPTRG00000016771	ZFR	100	97.858	Pan_troglodytes
ENSMUSG00000022201	Zfr	99	97.651	ENSPANG00000003729	ZFR	100	95.810	Papio_anubis
ENSMUSG00000022201	Zfr	100	75.630	ENSPKIG00000007596	ZFR	100	69.648	Paramormyrops_kingsleyae
ENSMUSG00000022201	Zfr	100	83.853	ENSPKIG00000016781	ZFR	100	78.749	Paramormyrops_kingsleyae
ENSMUSG00000022201	Zfr	99	92.282	ENSPSIG00000005779	ZFR	100	93.153	Pelodiscus_sinensis
ENSMUSG00000022201	Zfr	100	78.063	ENSPMGG00000015984	zfr	100	71.111	Periophthalmus_magnuspinnatus
ENSMUSG00000022201	Zfr	100	100.000	ENSPEMG00000014573	Zfr	98	97.391	Peromyscus_maniculatus_bairdii
ENSMUSG00000022201	Zfr	100	99.145	ENSPCIG00000020906	ZFR	100	94.134	Phascolarctos_cinereus
ENSMUSG00000022201	Zfr	100	79.096	ENSPFOG00000005931	zfr	100	75.941	Poecilia_formosa
ENSMUSG00000022201	Zfr	100	79.772	ENSPREG00000011947	zfr	100	76.243	Poecilia_reticulata
ENSMUSG00000022201	Zfr	99	96.980	ENSPPYG00000015378	ZFR	99	97.381	Pongo_abelii
ENSMUSG00000022201	Zfr	100	99.430	ENSPCAG00000007277	ZFR	100	89.106	Procavia_capensis
ENSMUSG00000022201	Zfr	100	99.430	ENSPCOG00000000045	ZFR	99	97.549	Propithecus_coquereli
ENSMUSG00000022201	Zfr	100	99.430	ENSPVAG00000004780	ZFR	94	97.576	Pteropus_vampyrus
ENSMUSG00000022201	Zfr	94	84.656	ENSPNYG00000006239	zfr	100	70.826	Pundamilia_nyererei
ENSMUSG00000022201	Zfr	100	84.986	ENSPNAG00000025151	zfr	100	81.227	Pygocentrus_nattereri
ENSMUSG00000022201	Zfr	100	100.000	ENSRNOG00000011627	Zfr	100	100.000	Rattus_norvegicus
ENSMUSG00000022201	Zfr	100	99.430	ENSRBIG00000041561	ZFR	100	97.858	Rhinopithecus_bieti
ENSMUSG00000022201	Zfr	100	99.430	ENSRROG00000044008	ZFR	100	97.858	Rhinopithecus_roxellana
ENSMUSG00000022201	Zfr	99	97.315	ENSSBOG00000024150	ZFR	99	97.568	Saimiri_boliviensis_boliviensis
ENSMUSG00000022201	Zfr	99	94.631	ENSSHAG00000015478	ZFR	100	93.883	Sarcophilus_harrisii
ENSMUSG00000022201	Zfr	99	79.866	ENSSFOG00015017300	ZFR	100	73.718	Scleropages_formosus
ENSMUSG00000022201	Zfr	100	78.090	ENSSMAG00000000320	zfr	100	76.385	Scophthalmus_maximus
ENSMUSG00000022201	Zfr	100	80.627	ENSSDUG00000013882	zfr	100	77.410	Seriola_dumerili
ENSMUSG00000022201	Zfr	99	79.866	ENSSLDG00000000762	zfr	100	70.432	Seriola_lalandi_dorsalis
ENSMUSG00000022201	Zfr	89	99.099	ENSSARG00000006571	ZFR	93	99.099	Sorex_araneus
ENSMUSG00000022201	Zfr	99	90.268	ENSSPUG00000016786	ZFR	100	90.087	Sphenodon_punctatus
ENSMUSG00000022201	Zfr	100	82.621	ENSSPAG00000019293	zfr	100	77.106	Stegastes_partitus
ENSMUSG00000022201	Zfr	100	99.430	ENSSSCG00000027681	ZFR	100	97.858	Sus_scrofa
ENSMUSG00000022201	Zfr	97	96.471	ENSTGUG00000001909	ZFR	100	91.174	Taeniopygia_guttata
ENSMUSG00000022201	Zfr	100	81.481	ENSTRUG00000016620	zfr	100	77.064	Takifugu_rubripes
ENSMUSG00000022201	Zfr	99	76.174	ENSTNIG00000018856	zfr	98	72.222	Tetraodon_nigroviridis
ENSMUSG00000022201	Zfr	100	77.778	ENSTBEG00000017687	ZFR	100	77.188	Tupaia_belangeri
ENSMUSG00000022201	Zfr	99	97.315	ENSTTRG00000017321	ZFR	100	92.644	Tursiops_truncatus
ENSMUSG00000022201	Zfr	87	99.349	ENSUAMG00000000172	-	99	97.491	Ursus_americanus
ENSMUSG00000022201	Zfr	87	99.349	ENSUMAG00000013805	-	99	97.491	Ursus_maritimus
ENSMUSG00000022201	Zfr	99	97.987	ENSVPAG00000011011	ZFR	100	94.693	Vicugna_pacos
ENSMUSG00000022201	Zfr	100	99.430	ENSVVUG00000022171	-	100	98.138	Vulpes_vulpes
ENSMUSG00000022201	Zfr	99	86.577	ENSXETG00000015598	zfr	100	79.647	Xenopus_tropicalis
ENSMUSG00000022201	Zfr	100	77.401	ENSXCOG00000009361	zfr	100	74.657	Xiphophorus_couchianus
ENSMUSG00000022201	Zfr	99	77.517	ENSXMAG00000013356	zfr	100	74.610	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003725	double-stranded RNA binding	21873635.	IBA	Function
GO:0003727	single-stranded RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0007275	multicellular organism development	-	IEA	Process
GO:0008270	zinc ion binding	-	IEA	Function