EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000022205 (Gene tree)
Gene ID
20024
Gene Symbol
Sub1
Alias
P15|Pc4|Rpo2tc1
Full Name
SUB1 homolog (S. cerevisiae)
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
15645 bases
Position
chr15:11981339-11996983
Accession
104811
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000022816PC4PF02229.166e-2411
ENSMUSP00000106130PC4PF02229.166e-2411
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseRBDmap & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000134414-430--- (aa)--
ENSMUST00000022816-3372XM_006520042ENSMUSP00000022816127 (aa)XP_006520105P11031
ENSMUST00000110504-675-ENSMUSP00000106130127 (aa)-P11031
ENSMUST00000129533-689--- (aa)--
Gene Model
Click here to download ENSMUSG00000022205's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000022205's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000022205Sub110093.701ENSG00000113387SUB110093.701Homo_sapiens
ENSMUSG00000022205Sub110069.291ENSAPOG00000005917SUB110065.354Acanthochromis_polyacanthus
ENSMUSG00000022205Sub110093.701ENSAMEG00000006238SUB19593.701Ailuropoda_melanoleuca
ENSMUSG00000022205Sub110070.866ENSACIG00000015976sub1b10066.929Amphilophus_citrinellus
ENSMUSG00000022205Sub18568.519ENSAOCG00000002323-7571.739Amphiprion_ocellaris
ENSMUSG00000022205Sub19166.379ENSAOCG00000007313-8271.569Amphiprion_ocellaris
ENSMUSG00000022205Sub15167.692ENSAPEG00000014618-6267.692Amphiprion_percula
ENSMUSG00000022205Sub110071.654ENSAPEG00000024347sub1b10067.717Amphiprion_percula
ENSMUSG00000022205Sub18764.286ENSAPEG00000017151-7171.739Amphiprion_percula
ENSMUSG00000022205Sub110071.654ENSATEG00000010340sub1b10067.717Anabas_testudineus
ENSMUSG00000022205Sub110076.866ENSACAG00000007974SUB110074.627Anolis_carolinensis
ENSMUSG00000022205Sub110089.764ENSANAG00000023392-8388.976Aotus_nancymaae
ENSMUSG00000022205Sub110093.701ENSANAG00000011651-10093.701Aotus_nancymaae
ENSMUSG00000022205Sub110072.441ENSACLG00000016875sub1b6468.504Astatotilapia_calliptera
ENSMUSG00000022205Sub110075.591ENSAMXG00000037104sub1b10071.654Astyanax_mexicanus
ENSMUSG00000022205Sub110093.701ENSBTAG00000021965SUB110093.701Bos_taurus
ENSMUSG00000022205Sub18093.137ENSCJAG00000018718SUB19893.137Callithrix_jacchus
ENSMUSG00000022205Sub110093.701ENSCAFG00000018879-8893.701Canis_familiaris
ENSMUSG00000022205Sub19190.435ENSCAFG00000024488-8689.815Canis_familiaris
ENSMUSG00000022205Sub110093.701ENSCAFG00000016713-9693.701Canis_familiaris
ENSMUSG00000022205Sub110093.701ENSCAFG00020016840-10093.701Canis_lupus_dingo
ENSMUSG00000022205Sub110091.406ENSCAFG00020011479-7791.406Canis_lupus_dingo
ENSMUSG00000022205Sub110093.701ENSCHIG00000008460SUB110093.701Capra_hircus
ENSMUSG00000022205Sub110093.701ENSTSYG00000029948-10093.701Carlito_syrichta
ENSMUSG00000022205Sub110081.890ENSTSYG00000035366-8381.890Carlito_syrichta
ENSMUSG00000022205Sub110086.154ENSTSYG00000014069-9386.154Carlito_syrichta
ENSMUSG00000022205Sub110093.701ENSCPOG00000031334SUB110093.701Cavia_porcellus
ENSMUSG00000022205Sub110088.976ENSCCAG00000020604-10088.976Cebus_capucinus
ENSMUSG00000022205Sub110089.764ENSCCAG00000033751-9589.764Cebus_capucinus
ENSMUSG00000022205Sub110086.614ENSCCAG00000017043-9386.614Cebus_capucinus
ENSMUSG00000022205Sub110093.701ENSCCAG00000023605-10093.701Cebus_capucinus
ENSMUSG00000022205Sub110093.701ENSCATG00000031199SUB110093.701Cercocebus_atys
ENSMUSG00000022205Sub110092.969ENSCLAG00000007522SUB110091.406Chinchilla_lanigera
ENSMUSG00000022205Sub110093.701ENSCSAG00000017172-10093.701Chlorocebus_sabaeus
ENSMUSG00000022205Sub110089.764ENSCSAG00000019449-10089.764Chlorocebus_sabaeus
ENSMUSG00000022205Sub110088.189ENSCPBG00000024218SUB17985.827Chrysemys_picta_bellii
ENSMUSG00000022205Sub110093.701ENSCANG00000029372SUB110093.701Colobus_angolensis_palliatus
ENSMUSG00000022205Sub110073.228ENSCANG00000028665-9073.228Colobus_angolensis_palliatus
ENSMUSG00000022205Sub110082.677ENSCGRG00001014660-10082.677Cricetulus_griseus_chok1gshd
ENSMUSG00000022205Sub110099.213ENSCGRG00001003473-10099.213Cricetulus_griseus_chok1gshd
ENSMUSG00000022205Sub110081.890ENSCGRG00001016254-10081.890Cricetulus_griseus_chok1gshd
ENSMUSG00000022205Sub110099.213ENSCGRG00000001133-10099.213Cricetulus_griseus_crigri
ENSMUSG00000022205Sub110084.252ENSCGRG00000001489-10084.252Cricetulus_griseus_crigri
ENSMUSG00000022205Sub110082.677ENSCGRG00000019368-10082.677Cricetulus_griseus_crigri
ENSMUSG00000022205Sub110070.866ENSDARG00000007720sub1b10067.717Danio_rerio
ENSMUSG00000022205Sub19975.397ENSDARG00000053446sub1a10074.016Danio_rerio
ENSMUSG00000022205Sub110091.339ENSDNOG00000032396-10091.339Dasypus_novemcinctus
ENSMUSG00000022205Sub110092.126ENSDNOG00000040794-10092.126Dasypus_novemcinctus
ENSMUSG00000022205Sub110092.913ENSDORG00000013916Sub110092.913Dipodomys_ordii
ENSMUSG00000022205Sub110093.701ENSEASG00005007099SUB110093.701Equus_asinus_asinus
ENSMUSG00000022205Sub110093.701ENSECAG00000012399SUB110093.701Equus_caballus
ENSMUSG00000022205Sub18192.233ENSEEUG00000000436SUB110092.233Erinaceus_europaeus
ENSMUSG00000022205Sub110093.701ENSFCAG00000037288SUB110093.701Felis_catus
ENSMUSG00000022205Sub110085.827ENSFALG00000002143SUB18785.827Ficedula_albicollis
ENSMUSG00000022205Sub110093.701ENSFDAG00000017179SUB110093.701Fukomys_damarensis
ENSMUSG00000022205Sub110085.827ENSGALG00000034905-10083.465Gallus_gallus
ENSMUSG00000022205Sub110087.402ENSGALG00000003248SUB110087.402Gallus_gallus
ENSMUSG00000022205Sub110051.969ENSGALG00000027147-10052.756Gallus_gallus
ENSMUSG00000022205Sub110071.654ENSGACG00000003912sub1b10066.929Gasterosteus_aculeatus
ENSMUSG00000022205Sub110086.614ENSGAGG00000013535SUB110086.614Gopherus_agassizii
ENSMUSG00000022205Sub110093.701ENSGGOG00000040900SUB110093.701Gorilla_gorilla
ENSMUSG00000022205Sub18270.192ENSHBUG00000013953sub1b7770.192Haplochromis_burtoni
ENSMUSG00000022205Sub110093.701ENSHGLG00000006749SUB110093.701Heterocephalus_glaber_female
ENSMUSG00000022205Sub110093.701ENSHGLG00100014344SUB110093.701Heterocephalus_glaber_male
ENSMUSG00000022205Sub110067.717ENSHCOG00000001809sub1b10062.205Hippocampus_comes
ENSMUSG00000022205Sub110070.543ENSIPUG00000024367SUB110066.667Ictalurus_punctatus
ENSMUSG00000022205Sub110070.079ENSIPUG00000008166sub110066.142Ictalurus_punctatus
ENSMUSG00000022205Sub110094.488ENSSTOG00000019364SUB110094.488Ictidomys_tridecemlineatus
ENSMUSG00000022205Sub110088.976ENSJJAG00000018885Sub110088.976Jaculus_jaculus
ENSMUSG00000022205Sub19969.048ENSLBEG00000010728sub1b10066.142Labrus_bergylta
ENSMUSG00000022205Sub15187.692ENSLACG00000001068SUB110087.692Latimeria_chalumnae
ENSMUSG00000022205Sub110077.165ENSLOCG00000006692sub1b10074.016Lepisosteus_oculatus
ENSMUSG00000022205Sub110092.913ENSLAFG00000032088-10092.913Loxodonta_africana
ENSMUSG00000022205Sub110092.913ENSLAFG00000011006-10092.913Loxodonta_africana
ENSMUSG00000022205Sub110093.701ENSMFAG00000040728SUB110093.701Macaca_fascicularis
ENSMUSG00000022205Sub110085.827ENSMFAG00000045643-6185.827Macaca_fascicularis
ENSMUSG00000022205Sub110093.701ENSMMUG00000046181SUB110093.701Macaca_mulatta
ENSMUSG00000022205Sub110093.701ENSMNEG00000037046SUB110093.701Macaca_nemestrina
ENSMUSG00000022205Sub110091.339ENSMLEG00000030509-9491.339Mandrillus_leucophaeus
ENSMUSG00000022205Sub110093.701ENSMLEG00000037017-10093.701Mandrillus_leucophaeus
ENSMUSG00000022205Sub110072.441ENSMLEG00000043436-9072.441Mandrillus_leucophaeus
ENSMUSG00000022205Sub110069.291ENSMAMG00000018428sub1b10065.354Mastacembelus_armatus
ENSMUSG00000022205Sub110070.866ENSMZEG00005021252sub1b10066.929Maylandia_zebra
ENSMUSG00000022205Sub110087.402ENSMGAG00000002906SUB110087.402Meleagris_gallopavo
ENSMUSG00000022205Sub110049.606ENSMGAG00000001200-9549.606Meleagris_gallopavo
ENSMUSG00000022205Sub110099.213ENSMAUG00000020232Sub110099.213Mesocricetus_auratus
ENSMUSG00000022205Sub110093.701ENSMICG00000014535SUB110093.701Microcebus_murinus
ENSMUSG00000022205Sub110085.827ENSMOCG00000016424-10085.827Microtus_ochrogaster
ENSMUSG00000022205Sub110098.425ENSMOCG00000018930-10098.425Microtus_ochrogaster
ENSMUSG00000022205Sub110081.429ENSMODG00000020410SUB110081.429Monodelphis_domestica
ENSMUSG00000022205Sub110070.866ENSMALG00000007163sub1b8172.441Monopterus_albus
ENSMUSG00000022205Sub110099.213MGP_CAROLIEiJ_G0019676Sub110099.213Mus_caroli
ENSMUSG00000022205Sub110098.425MGP_PahariEiJ_G0016056Sub110098.425Mus_pahari
ENSMUSG00000022205Sub1100100.000MGP_SPRETEiJ_G0020573Sub1100100.000Mus_spretus
ENSMUSG00000022205Sub110092.913ENSMPUG00000018418-10092.913Mustela_putorius_furo
ENSMUSG00000022205Sub110093.701ENSMPUG00000015185-10093.701Mustela_putorius_furo
ENSMUSG00000022205Sub110092.913ENSMLUG00000013685-9592.913Myotis_lucifugus
ENSMUSG00000022205Sub110088.976ENSMLUG00000009236-9588.976Myotis_lucifugus
ENSMUSG00000022205Sub110095.276ENSNGAG00000010782-8495.276Nannospalax_galili
ENSMUSG00000022205Sub110087.402ENSNGAG00000017212-10087.402Nannospalax_galili
ENSMUSG00000022205Sub110098.425ENSNGAG00000014072-10098.425Nannospalax_galili
ENSMUSG00000022205Sub18269.231ENSNBRG00000008451sub1b8469.231Neolamprologus_brichardi
ENSMUSG00000022205Sub110092.913ENSNLEG00000036068SUB110092.913Nomascus_leucogenys
ENSMUSG00000022205Sub110088.189ENSNLEG00000035968-10088.189Nomascus_leucogenys
ENSMUSG00000022205Sub110092.913ENSNLEG00000018383-9592.913Nomascus_leucogenys
ENSMUSG00000022205Sub110088.976ENSMEUG00000007770SUB110088.976Notamacropus_eugenii
ENSMUSG00000022205Sub110092.126ENSOPRG00000012887SUB110092.126Ochotona_princeps
ENSMUSG00000022205Sub110088.976ENSODEG00000014558-8488.976Octodon_degus
ENSMUSG00000022205Sub18589.815ENSODEG00000015114-9890.164Octodon_degus
ENSMUSG00000022205Sub110093.701ENSODEG00000001937-10093.701Octodon_degus
ENSMUSG00000022205Sub110088.976ENSOANG00000002328SUB19588.976Ornithorhynchus_anatinus
ENSMUSG00000022205Sub110092.126ENSOCUG00000006262SUB16092.126Oryctolagus_cuniculus
ENSMUSG00000022205Sub110093.701ENSOGAG00000009012-10093.701Otolemur_garnettii
ENSMUSG00000022205Sub19892.742ENSOGAG00000000337-10092.742Otolemur_garnettii
ENSMUSG00000022205Sub110093.701ENSOARG00000012154SUB110093.701Ovis_aries
ENSMUSG00000022205Sub110093.701ENSPPAG00000011212SUB110093.701Pan_paniscus
ENSMUSG00000022205Sub110093.701ENSPPRG00000008557SUB110093.701Panthera_pardus
ENSMUSG00000022205Sub110093.701ENSPTIG00000009466SUB110093.701Panthera_tigris_altaica
ENSMUSG00000022205Sub110093.701ENSPTRG00000048895SUB110093.701Pan_troglodytes
ENSMUSG00000022205Sub110087.402ENSPTRG00000041644-10087.402Pan_troglodytes
ENSMUSG00000022205Sub110093.701ENSPANG00000002644-9593.701Papio_anubis
ENSMUSG00000022205Sub110087.402ENSPANG00000035601-10087.402Papio_anubis
ENSMUSG00000022205Sub110091.339ENSPANG00000000672-9191.339Papio_anubis
ENSMUSG00000022205Sub110072.441ENSPANG00000033272-9072.441Papio_anubis
ENSMUSG00000022205Sub110093.701ENSPANG00000000339-9793.701Papio_anubis
ENSMUSG00000022205Sub110074.016ENSPKIG00000016923sub1b10068.504Paramormyrops_kingsleyae
ENSMUSG00000022205Sub110088.976ENSPSIG00000005731SUB19586.614Pelodiscus_sinensis
ENSMUSG00000022205Sub110088.976ENSPCIG00000020907-10088.976Phascolarctos_cinereus
ENSMUSG00000022205Sub110078.740ENSPCIG00000020827-10078.740Phascolarctos_cinereus
ENSMUSG00000022205Sub110088.189ENSPPYG00000018347-10088.189Pongo_abelii
ENSMUSG00000022205Sub110093.701ENSPPYG00000015379SUB110093.701Pongo_abelii
ENSMUSG00000022205Sub110093.701ENSPCOG00000014391SUB110093.701Propithecus_coquereli
ENSMUSG00000022205Sub110093.701ENSPVAG00000004785SUB110093.701Pteropus_vampyrus
ENSMUSG00000022205Sub110070.866ENSPNYG00000010975sub1b10066.929Pundamilia_nyererei
ENSMUSG00000022205Sub19975.397ENSPNAG00000005998sub1b9971.429Pygocentrus_nattereri
ENSMUSG00000022205Sub110073.228ENSPNAG00000008693sub1a10069.291Pygocentrus_nattereri
ENSMUSG00000022205Sub110098.425ENSRNOG00000050563Sub110098.425Rattus_norvegicus
ENSMUSG00000022205Sub110088.189ENSRBIG00000031233SUB110088.189Rhinopithecus_bieti
ENSMUSG00000022205Sub110081.102ENSRROG00000042718-9081.102Rhinopithecus_roxellana
ENSMUSG00000022205Sub110093.701ENSRROG00000040438SUB110093.701Rhinopithecus_roxellana
ENSMUSG00000022205Sub110093.701ENSSBOG00000026994SUB110093.701Saimiri_boliviensis_boliviensis
ENSMUSG00000022205Sub110088.976ENSSHAG00000014986SUB110088.976Sarcophilus_harrisii
ENSMUSG00000022205Sub110074.016ENSSFOG00015017283sub1b10069.291Scleropages_formosus
ENSMUSG00000022205Sub110075.591ENSSFOG00015018386sub1b10075.591Scleropages_formosus
ENSMUSG00000022205Sub110072.441ENSSMAG00000000313sub1b10066.929Scophthalmus_maximus
ENSMUSG00000022205Sub110071.654ENSSDUG00000013854sub1b7671.654Seriola_dumerili
ENSMUSG00000022205Sub110071.654ENSSLDG00000000852sub1b10066.142Seriola_lalandi_dorsalis
ENSMUSG00000022205Sub110087.402ENSSPUG00000016817SUB110087.402Sphenodon_punctatus
ENSMUSG00000022205Sub110071.654ENSSPAG00000019363sub1b10066.142Stegastes_partitus
ENSMUSG00000022205Sub110093.701ENSSSCG00000032650-10093.701Sus_scrofa
ENSMUSG00000022205Sub110093.701ENSSSCG00000040294-8793.701Sus_scrofa
ENSMUSG00000022205Sub110084.252ENSTGUG00000001918SUB110084.252Taeniopygia_guttata
ENSMUSG00000022205Sub110068.504ENSTRUG00000024420sub1b10064.567Takifugu_rubripes
ENSMUSG00000022205Sub110064.567ENSTNIG00000002700sub1b10063.780Tetraodon_nigroviridis
ENSMUSG00000022205Sub19984.921ENSTBEG00000015821-10084.921Tupaia_belangeri
ENSMUSG00000022205Sub110088.189ENSTBEG00000012861-10088.189Tupaia_belangeri
ENSMUSG00000022205Sub110092.913ENSTBEG00000006504-10092.913Tupaia_belangeri
ENSMUSG00000022205Sub110092.126ENSTBEG00000004053-10092.126Tupaia_belangeri
ENSMUSG00000022205Sub110088.189ENSTBEG00000001790-10088.189Tupaia_belangeri
ENSMUSG00000022205Sub110087.402ENSTBEG00000011247-9987.402Tupaia_belangeri
ENSMUSG00000022205Sub18193.204ENSTTRG00000017324SUB110093.204Tursiops_truncatus
ENSMUSG00000022205Sub110093.701ENSUAMG00000000182SUB110093.701Ursus_americanus
ENSMUSG00000022205Sub110093.701ENSUMAG00000013792SUB110093.701Ursus_maritimus
ENSMUSG00000022205Sub110086.614ENSVPAG00000011012SUB110086.614Vicugna_pacos
ENSMUSG00000022205Sub110093.701ENSVVUG00000022166-10093.701Vulpes_vulpes
ENSMUSG00000022205Sub18985.841ENSVVUG00000025193-9288.182Vulpes_vulpes
ENSMUSG00000022205Sub110078.295ENSXETG00000027218sub110078.295Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001228DNA-binding transcription activator activity, RNA polymerase II-specific18836447.IDAFunction
GO:0003677DNA binding-IEAFunction
GO:0003697single-stranded DNA binding-ISOFunction
GO:0003713transcription coactivator activity21873635.IBAFunction
GO:0003713transcription coactivator activity-ISOFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-ISOComponent
GO:0005667transcription factor complex21873635.IBAComponent
GO:0005667transcription factor complex-ISOComponent
GO:0005730nucleolus-ISOComponent
GO:0006355regulation of transcription, DNA-templated-IEAProcess
GO:0006357regulation of transcription by RNA polymerase II-ISOProcess
GO:0042802identical protein binding-ISOFunction
GO:0060261positive regulation of transcription initiation from RNA polymerase II promoter21873635.IBAProcess
GO:0060395SMAD protein signal transduction23390484.IDAProcess
GO:1990837sequence-specific double-stranded DNA binding18836447.IDAFunction

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