EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000159121	-	769	-	-	- (aa)	-	-
ENSMUST00000160174	-	817	-	-	- (aa)	-	-
ENSMUST00000159449	-	622	-	-	- (aa)	-	-
ENSMUST00000161266	-	845	-	ENSMUSP00000125566	199 (aa)	-	E0CZA1
ENSMUST00000022842	-	1853	XM_006520016	ENSMUSP00000022842	541 (aa)	XP_006520079	P80316

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000022234	Cct5	100	70.352	WBGene00000380	cct-5	98	69.301	Caenorhabditis_elegans
ENSMUSG00000022234	Cct5	99	71.717	FBgn0010621	CCT5	99	70.412	Drosophila_melanogaster
ENSMUSG00000022234	Cct5	100	96.303	ENSG00000150753	CCT5	100	96.303	Homo_sapiens
ENSMUSG00000022234	Cct5	99	59.672	YJR064W	CCT5	97	59.672	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0002199	zona pellucida receptor complex	21880732.	IDA	Component
GO:0003730	mRNA 3'-UTR binding	-	ISO	Function
GO:0005515	protein binding	10747865.23872636.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005813	centrosome	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005832	chaperonin-containing T-complex	21873635.	IBA	Component
GO:0005832	chaperonin-containing T-complex	7828721.7953530.	IDA	Component
GO:0005832	chaperonin-containing T-complex	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005874	microtubule	-	ISO	Component
GO:0006457	protein folding	-	IEA	Process
GO:0007339	binding of sperm to zona pellucida	21880732.	IDA	Process
GO:0031681	G-protein beta-subunit binding	-	ISO	Function
GO:0032212	positive regulation of telomere maintenance via telomerase	-	ISO	Process
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0044297	cell body	21880732.	IDA	Component
GO:0048027	mRNA 5'-UTR binding	-	ISO	Function
GO:0048487	beta-tubulin binding	-	ISO	Function
GO:0050821	protein stabilization	-	ISO	Process
GO:0051082	unfolded protein binding	-	IEA	Function
GO:1901998	toxin transport	23716698.	IMP	Process
GO:1904851	positive regulation of establishment of protein localization to telomere	-	ISO	Process