EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000022255 (Gene tree)
Gene ID: 67154
Gene Symbol: Mtdh
Alias: 2610103J23Rik|3D3/Lyric|AEG-1|D8Bwg1112e|Lyric
Full Name: metadherin
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 62931
Position: chr15: 34082694-34145624
Accession: 1914404
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000226992	-	596	-	ENSMUSP00000154553	91 (aa)	-	A0A2I3BRF4
ENSMUST00000226331	-	426	-	-	- (aa)	-	-
ENSMUST00000163333	-	1593	XM_006520152	ENSMUSP00000130190	393 (aa)	XP_006520215	F6QHD1
ENSMUST00000170050	-	1147	-	ENSMUSP00000128288	382 (aa)	-	F6QFT1
ENSMUST00000172083	-	772	-	-	- (aa)	-	-
ENSMUST00000170553	-	659	-	ENSMUSP00000126167	220 (aa)	-	F6ZQL0
ENSMUST00000172082	-	4582	-	-	- (aa)	-	-
ENSMUST00000169905	-	1070	XM_006520153	ENSMUSP00000131814	356 (aa)	XP_006520216	F6ZSG0
ENSMUST00000022865	-	6919	XM_006520148	ENSMUSP00000022865	579 (aa)	XP_006520212	Q80WJ7
ENSMUST00000163697	-	5563	-	-	- (aa)	-	-
ENSMUST00000168991	-	989	-	ENSMUSP00000129500	164 (aa)	-	E9PUX0
ENSMUST00000171711	-	1200	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000022255's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000022255's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000022255	Mtdh	100	90.722	ENSG00000147649	MTDH	100	91.065	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0001085	RNA polymerase II transcription factor binding	21873635.	IBA	Function
GO:0001085	RNA polymerase II transcription factor binding	-	ISO	Function
GO:0001650	fibrillar center	-	ISO	Component
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0003725	double-stranded RNA binding	21266579.	ISO	Function
GO:0005515	protein binding	19433866.24981741.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	14980505.19433866.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005783	endoplasmic reticulum	14980505.	IDA	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005789	endoplasmic reticulum membrane	21873635.	IBA	Component
GO:0005789	endoplasmic reticulum membrane	19433866.	IDA	Component
GO:0005923	bicellular tight junction	-	ISO	Component
GO:0010508	positive regulation of autophagy	-	ISO	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016324	apical plasma membrane	-	ISO	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0030054	cell junction	-	IEA	Component
GO:0031663	lipopolysaccharide-mediated signaling pathway	-	ISO	Process
GO:0043066	negative regulation of apoptotic process	-	ISO	Process
GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	-	ISO	Process
GO:0045766	positive regulation of angiogenesis	-	ISO	Process
GO:0046581	intercellular canaliculus	-	ISO	Component
GO:0048471	perinuclear region of cytoplasm	14980505.	IDA	Component
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0051059	NF-kappaB binding	21873635.	IBA	Function
GO:0051059	NF-kappaB binding	-	ISO	Function
GO:0051092	positive regulation of NF-kappaB transcription factor activity	-	ISO	Process
GO:0051897	positive regulation of protein kinase B signaling	-	ISO	Process