EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000022332 (Gene tree)
Gene ID: 13992
Gene Symbol: Khdrbs3
Alias: Etle|SLM-2|Salp|T-STAR
Full Name: KH domain containing%2C RNA binding%2C signal transduction associated 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 172792 bases
Position: chr15:68928420-69101211
Accession: 1313312
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000155218	KH_1	PF00013.29	5.7e-07	1	1
ENSMUSP00000022954	KH_1	PF00013.29	3.4e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000229534	-	688	-	-	- (aa)	-	-
ENSMUST00000230847	-	1344	-	ENSMUSP00000154871	258 (aa)	-	A0A2R8VJR4
ENSMUST00000230073	-	501	-	ENSMUSP00000155218	126 (aa)	-	A0A2R8VHM1
ENSMUST00000229683	-	1740	-	ENSMUSP00000155136	346 (aa)	-	Q9R226
ENSMUST00000229234	-	2861	-	ENSMUSP00000154887	346 (aa)	-	Q9R226
ENSMUST00000022954	-	1887	XM_006520410	ENSMUSP00000022954	346 (aa)	XP_006520473	Q9R226

Gene Model

Click here to download ENSMUSG00000022332's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000022332's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000022332	Khdrbs3	97	35.938	ENSMUSG00000024949	Sf1	56	33.125
ENSMUSG00000022332	Khdrbs3	100	72.222	ENSMUSG00000028790	Khdrbs1	78	56.825
ENSMUSG00000022332	Khdrbs3	100	84.127	ENSMUSG00000026058	Khdrbs2	99	66.479
ENSMUSG00000022332	Khdrbs3	98	48.000	ENSMUSG00000062078	Qk	73	36.820

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSG00000131773	KHDRBS3	99	99.367	Homo_sapiens
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSAMEG00000016744	KHDRBS3	100	93.538	Ailuropoda_melanoleuca
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSACIG00000002529	KHDRBS3	100	74.007	Amphilophus_citrinellus
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSAOCG00000006836	KHDRBS3	99	77.035	Amphiprion_ocellaris
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSAPEG00000005415	KHDRBS3	99	77.035	Amphiprion_percula
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSATEG00000010658	KHDRBS3	99	76.453	Anabas_testudineus
ENSMUSG00000022332	Khdrbs3	100	99.206	ENSAPLG00000014746	KHDRBS3	99	88.679	Anas_platyrhynchos
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSACAG00000012042	KHDRBS3	100	83.673	Anolis_carolinensis
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSANAG00000019406	KHDRBS3	100	89.914	Aotus_nancymaae
ENSMUSG00000022332	Khdrbs3	100	95.238	ENSACLG00000010826	KHDRBS3	99	76.453	Astatotilapia_calliptera
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSBTAG00000002181	KHDRBS3	100	95.954	Bos_taurus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSCJAG00000004331	KHDRBS3	100	96.821	Callithrix_jacchus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSCAFG00000001166	KHDRBS3	100	95.954	Canis_familiaris
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSCAFG00020013570	KHDRBS3	99	95.899	Canis_lupus_dingo
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSCHIG00000016533	KHDRBS3	100	95.954	Capra_hircus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSTSYG00000004106	KHDRBS3	100	96.835	Carlito_syrichta
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSCPOG00000000342	KHDRBS3	100	93.143	Cavia_porcellus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSCCAG00000031191	KHDRBS3	100	97.110	Cebus_capucinus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSCATG00000034823	KHDRBS3	100	96.532	Cercocebus_atys
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSCLAG00000002164	KHDRBS3	100	95.614	Chinchilla_lanigera
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSCSAG00000009815	KHDRBS3	100	95.385	Chlorocebus_sabaeus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSCPBG00000019654	KHDRBS3	100	89.337	Chrysemys_picta_bellii
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSCANG00000031881	KHDRBS3	100	96.765	Colobus_angolensis_palliatus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSCGRG00001000113	Khdrbs3	100	98.418	Cricetulus_griseus_chok1gshd
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSCSEG00000013385	KHDRBS3	99	74.419	Cynoglossus_semilaevis
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSCVAG00000007211	KHDRBS3	99	76.163	Cyprinodon_variegatus
ENSMUSG00000022332	Khdrbs3	87	95.455	ENSDARG00000101020	KHDRBS3	97	68.212	Danio_rerio
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSDNOG00000010878	KHDRBS3	100	91.468	Dasypus_novemcinctus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSDORG00000014595	-	94	92.308	Dipodomys_ordii
ENSMUSG00000022332	Khdrbs3	83	100.000	ENSETEG00000004701	KHDRBS3	100	79.180	Echinops_telfairi
ENSMUSG00000022332	Khdrbs3	100	99.206	ENSEASG00005022023	KHDRBS3	99	96.845	Equus_asinus_asinus
ENSMUSG00000022332	Khdrbs3	100	99.206	ENSECAG00000010194	KHDRBS3	100	96.821	Equus_caballus
ENSMUSG00000022332	Khdrbs3	91	77.532	ENSEEUG00000007062	KHDRBS3	100	77.532	Erinaceus_europaeus
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSELUG00000011955	KHDRBS3	99	74.785	Esox_lucius
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSFCAG00000000229	KHDRBS3	100	95.954	Felis_catus
ENSMUSG00000022332	Khdrbs3	100	99.206	ENSFALG00000002752	KHDRBS3	100	88.184	Ficedula_albicollis
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSFDAG00000020910	KHDRBS3	93	96.215	Fukomys_damarensis
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSFHEG00000017679	KHDRBS3	99	75.581	Fundulus_heteroclitus
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSGMOG00000009156	KHDRBS3	100	72.327	Gadus_morhua
ENSMUSG00000022332	Khdrbs3	100	99.206	ENSGALG00000031519	KHDRBS3	100	88.184	Gallus_gallus
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSGAFG00000018918	KHDRBS3	99	76.453	Gambusia_affinis
ENSMUSG00000022332	Khdrbs3	100	95.238	ENSGACG00000008847	KHDRBS3	100	73.041	Gasterosteus_aculeatus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSGAGG00000022819	KHDRBS3	100	87.896	Gopherus_agassizii
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSGGOG00000000940	KHDRBS3	100	97.110	Gorilla_gorilla
ENSMUSG00000022332	Khdrbs3	100	95.238	ENSHBUG00000009781	KHDRBS3	99	76.163	Haplochromis_burtoni
ENSMUSG00000022332	Khdrbs3	95	95.000	ENSHGLG00000008364	-	100	78.324	Heterocephalus_glaber_female
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSHGLG00000006718	KHDRBS3	100	95.954	Heterocephalus_glaber_female
ENSMUSG00000022332	Khdrbs3	95	95.000	ENSHGLG00100010562	-	96	79.762	Heterocephalus_glaber_male
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSHGLG00100004576	-	100	96.203	Heterocephalus_glaber_male
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSHCOG00000009110	KHDRBS3	99	73.112	Hippocampus_comes
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSIPUG00000004984	khdrbs3	99	76.744	Ictalurus_punctatus
ENSMUSG00000022332	Khdrbs3	100	99.206	ENSSTOG00000008710	KHDRBS3	100	95.087	Ictidomys_tridecemlineatus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSJJAG00000011049	Khdrbs3	100	93.642	Jaculus_jaculus
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSKMAG00000000152	-	80	76.779	Kryptolebias_marmoratus
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSLBEG00000003951	KHDRBS3	86	75.575	Labrus_bergylta
ENSMUSG00000022332	Khdrbs3	100	96.825	ENSLOCG00000003734	KHDRBS3	99	79.932	Lepisosteus_oculatus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSLAFG00000004849	KHDRBS3	98	93.538	Loxodonta_africana
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSMFAG00000041845	KHDRBS3	100	96.928	Macaca_fascicularis
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSMMUG00000022248	KHDRBS3	99	96.845	Macaca_mulatta
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSMNEG00000038285	KHDRBS3	100	96.821	Macaca_nemestrina
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSMLEG00000032520	KHDRBS3	100	96.835	Mandrillus_leucophaeus
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSMAMG00000003695	KHDRBS3	99	76.744	Mastacembelus_armatus
ENSMUSG00000022332	Khdrbs3	100	95.238	ENSMZEG00005001896	KHDRBS3	99	76.163	Maylandia_zebra
ENSMUSG00000022332	Khdrbs3	100	99.206	ENSMGAG00000012888	KHDRBS3	100	86.919	Meleagris_gallopavo
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSMAUG00000008539	Khdrbs3	100	82.133	Mesocricetus_auratus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSMICG00000027467	KHDRBS3	100	96.821	Microcebus_murinus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSMOCG00000020954	Khdrbs3	100	98.266	Microtus_ochrogaster
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSMMOG00000021238	KHDRBS3	69	78.277	Mola_mola
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSMODG00000000975	KHDRBS3	99	91.908	Monodelphis_domestica
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSMALG00000016210	KHDRBS3	99	77.035	Monopterus_albus
ENSMUSG00000022332	Khdrbs3	100	100.000	MGP_CAROLIEiJ_G0019855	Khdrbs3	100	99.422	Mus_caroli
ENSMUSG00000022332	Khdrbs3	100	100.000	MGP_PahariEiJ_G0019860	Khdrbs3	100	99.422	Mus_pahari
ENSMUSG00000022332	Khdrbs3	100	100.000	MGP_SPRETEiJ_G0020753	Khdrbs3	100	99.422	Mus_spretus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSMPUG00000001869	KHDRBS3	100	93.846	Mustela_putorius_furo
ENSMUSG00000022332	Khdrbs3	100	99.206	ENSMLUG00000004054	KHDRBS3	100	84.290	Myotis_lucifugus
ENSMUSG00000022332	Khdrbs3	100	95.238	ENSNBRG00000000697	KHDRBS3	100	76.012	Neolamprologus_brichardi
ENSMUSG00000022332	Khdrbs3	100	99.206	ENSNLEG00000010766	KHDRBS3	100	96.243	Nomascus_leucogenys
ENSMUSG00000022332	Khdrbs3	100	99.206	ENSOPRG00000000404	KHDRBS3	100	94.937	Ochotona_princeps
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSODEG00000000682	KHDRBS3	100	95.954	Octodon_degus
ENSMUSG00000022332	Khdrbs3	100	95.238	ENSONIG00000007652	KHDRBS3	100	76.025	Oreochromis_niloticus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSOANG00000014074	KHDRBS3	100	83.631	Ornithorhynchus_anatinus
ENSMUSG00000022332	Khdrbs3	100	99.206	ENSOCUG00000000743	KHDRBS3	100	94.207	Oryctolagus_cuniculus
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSORLG00000013441	KHDRBS3	99	74.419	Oryzias_latipes
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSORLG00020021838	KHDRBS3	99	74.419	Oryzias_latipes_hni
ENSMUSG00000022332	Khdrbs3	100	95.238	ENSORLG00015010093	KHDRBS3	99	71.512	Oryzias_latipes_hsok
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSOGAG00000005150	KHDRBS3	100	96.243	Otolemur_garnettii
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSOARG00000005036	KHDRBS3	100	90.407	Ovis_aries
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSPPAG00000043998	KHDRBS3	100	96.821	Pan_paniscus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSPPRG00000001453	KHDRBS3	100	95.954	Panthera_pardus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSPTIG00000005373	KHDRBS3	91	95.886	Panthera_tigris_altaica
ENSMUSG00000022332	Khdrbs3	100	87.572	ENSPTRG00000020608	KHDRBS3	100	87.572	Pan_troglodytes
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSPANG00000006134	KHDRBS3	100	96.821	Papio_anubis
ENSMUSG00000022332	Khdrbs3	100	95.238	ENSPKIG00000002433	KHDRBS3	99	76.453	Paramormyrops_kingsleyae
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSPSIG00000004366	KHDRBS3	100	87.644	Pelodiscus_sinensis
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSPMGG00000018866	KHDRBS3	99	73.775	Periophthalmus_magnuspinnatus
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSPREG00000015667	KHDRBS3	99	77.035	Poecilia_reticulata
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSPPYG00000018899	KHDRBS3	100	95.252	Pongo_abelii
ENSMUSG00000022332	Khdrbs3	100	99.206	ENSPVAG00000017021	KHDRBS3	100	93.038	Pteropus_vampyrus
ENSMUSG00000022332	Khdrbs3	100	67.969	ENSPNYG00000007200	KHDRBS3	99	66.185	Pundamilia_nyererei
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSPNAG00000013500	KHDRBS3	99	77.616	Pygocentrus_nattereri
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSRNOG00000009539	Khdrbs3	100	96.821	Rattus_norvegicus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSRBIG00000036854	KHDRBS3	100	97.110	Rhinopithecus_bieti
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSRROG00000044792	KHDRBS3	100	97.110	Rhinopithecus_roxellana
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSSBOG00000020642	KHDRBS3	100	97.270	Saimiri_boliviensis_boliviensis
ENSMUSG00000022332	Khdrbs3	89	99.107	ENSSHAG00000000632	-	100	99.174	Sarcophilus_harrisii
ENSMUSG00000022332	Khdrbs3	100	96.825	ENSSFOG00015013177	khdrbs3	99	77.326	Scleropages_formosus
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSSMAG00000020535	KHDRBS3	99	76.163	Scophthalmus_maximus
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSSDUG00000000996	KHDRBS3	99	76.453	Seriola_dumerili
ENSMUSG00000022332	Khdrbs3	100	68.504	ENSSLDG00000006072	KHDRBS3	86	65.541	Seriola_lalandi_dorsalis
ENSMUSG00000022332	Khdrbs3	70	100.000	ENSSARG00000011751	KHDRBS3	100	76.923	Sorex_araneus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSSPUG00000005628	KHDRBS3	100	88.473	Sphenodon_punctatus
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSSPAG00000018331	KHDRBS3	99	77.035	Stegastes_partitus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSSSCG00000005941	KHDRBS3	93	95.441	Sus_scrofa
ENSMUSG00000022332	Khdrbs3	100	99.206	ENSTGUG00000012611	KHDRBS3	100	88.473	Taeniopygia_guttata
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSTRUG00000013451	KHDRBS3	99	69.054	Takifugu_rubripes
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSTNIG00000014021	KHDRBS3	99	72.948	Tetraodon_nigroviridis
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSTBEG00000004773	KHDRBS3	100	96.243	Tupaia_belangeri
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSTTRG00000001270	KHDRBS3	100	95.376	Tursiops_truncatus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSUMAG00000002010	KHDRBS3	100	96.246	Ursus_maritimus
ENSMUSG00000022332	Khdrbs3	100	100.000	ENSVVUG00000019368	KHDRBS3	99	95.899	Vulpes_vulpes
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSXETG00000009227	khdrbs3	100	77.640	Xenopus_tropicalis
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSXCOG00000010479	KHDRBS3	81	75.904	Xiphophorus_couchianus
ENSMUSG00000022332	Khdrbs3	100	96.032	ENSXMAG00000005362	KHDRBS3	99	76.163	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0003727	single-stranded RNA binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	10332027.	IDA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006397	mRNA processing	-	ISO	Process
GO:0017124	SH3 domain binding	-	IEA	Function
GO:0019904	protein domain specific binding	-	ISO	Function
GO:0033120	positive regulation of RNA splicing	-	ISO	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0048024	regulation of mRNA splicing, via spliceosome	22196734.	IDA	Process
GO:0051259	protein complex oligomerization	-	ISO	Process