EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000230302	-	990	-	ENSMUSP00000155198	257 (aa)	-	A0A2R8VHK9
ENSMUST00000170134	-	2984	-	ENSMUSP00000126849	589 (aa)	-	P46061
ENSMUST00000052374	-	3033	-	ENSMUSP00000057771	589 (aa)	-	P46061
ENSMUST00000171115	-	2743	XM_006520646	ENSMUSP00000130046	589 (aa)	XP_011243826	P46061
ENSMUST00000230726	-	710	-	ENSMUSP00000155851	144 (aa)	-	A0A2R8W753
ENSMUST00000229705	-	451	-	-	- (aa)	-	-
ENSMUST00000230287	-	1685	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000022391	Rangap1	100	47.860	FBgn0003346	RanGAP	59	44.633	Drosophila_melanogaster
ENSMUSG00000022391	Rangap1	100	95.833	ENSG00000100401	RANGAP1	100	97.297	Homo_sapiens
ENSMUSG00000022391	Rangap1	91	32.922	YMR235C		79	32.219	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000775	chromosome, centromeric region	-	IEA	Component
GO:0000776	kinetochore	-	ISO	Component
GO:0003723	RNA binding	-	ISO	Function
GO:0005096	GTPase activator activity	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005635	nuclear envelope	-	ISO	Component
GO:0005643	nuclear pore	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005737	cytoplasm	15923632.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0007165	signal transduction	-	IEA	Process
GO:0008536	Ran GTPase binding	-	ISO	Function
GO:0016235	aggresome	-	ISO	Component
GO:0030425	dendrite	-	ISO	Component
GO:0031625	ubiquitin protein ligase binding	-	ISO	Function
GO:0031965	nuclear membrane	-	ISO	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0044614	nuclear pore cytoplasmic filaments	-	ISO	Component
GO:0046826	negative regulation of protein export from nucleus	-	ISO	Process
GO:0048471	perinuclear region of cytoplasm	15923632.	IDA	Component
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0071375	cellular response to peptide hormone stimulus	-	ISO	Process
GO:0072686	mitotic spindle	-	ISO	Component
GO:0090630	activation of GTPase activity	-	ISO	Process
GO:1904115	axon cytoplasm	-	ISO	Component
GO:1990723	cytoplasmic periphery of the nuclear pore complex	-	ISO	Component