EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000022471 (Gene tree)
Gene ID: 14375
Gene Symbol: Xrcc6
Alias: G22p1|Ku p70|Ku70
Full Name: X-ray repair complementing defective repair in Chinese hamster cells 6
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 52251 bases
Position: chr15:81987835-82040085
Accession: 95606
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000155606	SAP	PF02037.27	6e-10	1	1
ENSMUSP00000068559	SAP	PF02037.27	1.8e-09	1	1
ENSMUSP00000097968	SAP	PF02037.27	1.8e-09	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000164775	-	529	-	-	- (aa)	-	-
ENSMUST00000166311	-	686	-	-	- (aa)	-	-
ENSMUST00000165777	-	797	-	ENSMUSP00000131212	106 (aa)	-	E9Q163
ENSMUST00000164779	-	809	-	ENSMUSP00000127927	97 (aa)	-	E9PZD4
ENSMUST00000168581	-	471	-	ENSMUSP00000129628	27 (aa)	-	E9Q4A4
ENSMUST00000164975	-	425	-	-	- (aa)	-	-
ENSMUST00000170907	-	802	-	-	- (aa)	-	-
ENSMUST00000170630	-	677	-	-	- (aa)	-	-
ENSMUST00000100399	-	3296	XM_006520442	ENSMUSP00000097968	608 (aa)	XP_006520505	A0A0R4J187
ENSMUST00000069530	-	2114	XM_006520445	ENSMUSP00000068559	608 (aa)	XP_006520508	A0A0R4J187
ENSMUST00000230729	-	1062	-	ENSMUSP00000155606	263 (aa)	-	A0A2R8VHZ9
ENSMUST00000164920	-	387	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000022471's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000022471's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000022471	Xrcc6	99	83.224	ENSG00000196419	XRCC6	99	83.224	Homo_sapiens
ENSMUSG00000022471	Xrcc6	99	59.316	ENSAPOG00000012704	xrcc6	99	56.557	Acanthochromis_polyacanthus
ENSMUSG00000022471	Xrcc6	99	60.076	ENSACIG00000021277	xrcc6	99	56.885	Amphilophus_citrinellus
ENSMUSG00000022471	Xrcc6	99	58.555	ENSAOCG00000021344	xrcc6	99	56.137	Amphiprion_ocellaris
ENSMUSG00000022471	Xrcc6	99	59.316	ENSAPEG00000020712	xrcc6	99	56.301	Amphiprion_percula
ENSMUSG00000022471	Xrcc6	99	58.555	ENSATEG00000007119	xrcc6	99	56.885	Anabas_testudineus
ENSMUSG00000022471	Xrcc6	100	65.399	ENSAPLG00000004469	XRCC6	100	69.134	Anas_platyrhynchos
ENSMUSG00000022471	Xrcc6	99	72.368	ENSANAG00000035230	-	99	72.368	Aotus_nancymaae
ENSMUSG00000022471	Xrcc6	99	74.752	ENSANAG00000020017	-	99	74.587	Aotus_nancymaae
ENSMUSG00000022471	Xrcc6	99	83.059	ENSANAG00000018684	XRCC6	99	83.272	Aotus_nancymaae
ENSMUSG00000022471	Xrcc6	99	72.031	ENSANAG00000023445	-	99	70.772	Aotus_nancymaae
ENSMUSG00000022471	Xrcc6	99	59.696	ENSACLG00000018608	xrcc6	99	57.213	Astatotilapia_calliptera
ENSMUSG00000022471	Xrcc6	99	59.316	ENSAMXG00000007545	xrcc6	99	57.705	Astyanax_mexicanus
ENSMUSG00000022471	Xrcc6	81	78.404	ENSCJAG00000044926	-	95	78.404	Callithrix_jacchus
ENSMUSG00000022471	Xrcc6	68	78.090	ENSCJAG00000039518	-	85	78.090	Callithrix_jacchus
ENSMUSG00000022471	Xrcc6	81	79.343	ENSCJAG00000043192	-	95	79.343	Callithrix_jacchus
ENSMUSG00000022471	Xrcc6	99	83.388	ENSCJAG00000045512	XRCC6	99	83.388	Callithrix_jacchus
ENSMUSG00000022471	Xrcc6	81	79.343	ENSCJAG00000040177	-	95	79.343	Callithrix_jacchus
ENSMUSG00000022471	Xrcc6	99	83.415	ENSTSYG00000011348	XRCC6	99	83.415	Carlito_syrichta
ENSMUSG00000022471	Xrcc6	99	67.816	ENSCCAG00000035711	-	99	66.776	Cebus_capucinus
ENSMUSG00000022471	Xrcc6	90	85.580	ENSCCAG00000030468	-	99	85.580	Cebus_capucinus
ENSMUSG00000022471	Xrcc6	99	78.618	ENSCCAG00000030041	-	95	78.454	Cebus_capucinus
ENSMUSG00000022471	Xrcc6	99	68.317	ENSCCAG00000037663	-	97	67.987	Cebus_capucinus
ENSMUSG00000022471	Xrcc6	99	82.895	ENSCATG00000042366	XRCC6	98	83.993	Cercocebus_atys
ENSMUSG00000022471	Xrcc6	100	85.386	ENSCLAG00000016669	XRCC6	100	85.386	Chinchilla_lanigera
ENSMUSG00000022471	Xrcc6	99	82.895	ENSCSAG00000005784	XRCC6	99	82.895	Chlorocebus_sabaeus
ENSMUSG00000022471	Xrcc6	99	73.399	ENSCPBG00000020535	XRCC6	99	73.399	Chrysemys_picta_bellii
ENSMUSG00000022471	Xrcc6	99	39.700	ENSCING00000000633	-	96	33.333	Ciona_intestinalis
ENSMUSG00000022471	Xrcc6	91	41.667	ENSCSAVG00000000984	-	99	41.667	Ciona_savignyi
ENSMUSG00000022471	Xrcc6	99	82.895	ENSCANG00000031032	XRCC6	99	82.895	Colobus_angolensis_palliatus
ENSMUSG00000022471	Xrcc6	100	84.211	ENSCGRG00001019029	Xrcc6	100	84.211	Cricetulus_griseus_chok1gshd
ENSMUSG00000022471	Xrcc6	100	92.434	ENSCGRG00000001528	Xrcc6	100	92.434	Cricetulus_griseus_crigri
ENSMUSG00000022471	Xrcc6	99	60.456	ENSCSEG00000020434	xrcc6	99	56.721	Cynoglossus_semilaevis
ENSMUSG00000022471	Xrcc6	99	58.935	ENSCVAG00000002189	xrcc6	99	56.557	Cyprinodon_variegatus
ENSMUSG00000022471	Xrcc6	99	61.278	ENSDARG00000071551	xrcc6	100	58.401	Danio_rerio
ENSMUSG00000022471	Xrcc6	99	63.218	ENSETEG00000015333	-	78	81.538	Echinops_telfairi
ENSMUSG00000022471	Xrcc6	100	82.759	ENSEASG00005001514	XRCC6	100	83.087	Equus_asinus_asinus
ENSMUSG00000022471	Xrcc6	100	82.266	ENSECAG00000017563	XRCC6	100	83.126	Equus_caballus
ENSMUSG00000022471	Xrcc6	99	57.034	ENSELUG00000020301	xrcc6	99	55.082	Esox_lucius
ENSMUSG00000022471	Xrcc6	99	68.689	ENSFALG00000011908	XRCC6	97	68.852	Ficedula_albicollis
ENSMUSG00000022471	Xrcc6	99	58.251	ENSFHEG00000016833	xrcc6	99	58.251	Fundulus_heteroclitus
ENSMUSG00000022471	Xrcc6	97	57.198	ENSGMOG00000013524	xrcc6	89	56.890	Gadus_morhua
ENSMUSG00000022471	Xrcc6	99	66.776	ENSGALG00000011932	XRCC6	99	66.939	Gallus_gallus
ENSMUSG00000022471	Xrcc6	99	60.076	ENSGAFG00000008130	xrcc6	99	56.393	Gambusia_affinis
ENSMUSG00000022471	Xrcc6	99	57.143	ENSGACG00000004868	xrcc6	99	54.870	Gasterosteus_aculeatus
ENSMUSG00000022471	Xrcc6	99	72.414	ENSGAGG00000017518	XRCC6	99	72.414	Gopherus_agassizii
ENSMUSG00000022471	Xrcc6	99	83.224	ENSGGOG00000015885	XRCC6	99	83.224	Gorilla_gorilla
ENSMUSG00000022471	Xrcc6	81	78.605	ENSGGOG00000026303	-	95	78.605	Gorilla_gorilla
ENSMUSG00000022471	Xrcc6	99	60.456	ENSHBUG00000023281	xrcc6	99	58.007	Haplochromis_burtoni
ENSMUSG00000022471	Xrcc6	100	83.882	ENSHGLG00000018078	XRCC6	100	83.882	Heterocephalus_glaber_female
ENSMUSG00000022471	Xrcc6	100	83.882	ENSHGLG00100011264	XRCC6	100	83.882	Heterocephalus_glaber_male
ENSMUSG00000022471	Xrcc6	99	58.015	ENSHCOG00000009821	xrcc6	99	53.344	Hippocampus_comes
ENSMUSG00000022471	Xrcc6	99	60.377	ENSIPUG00000000767	xrcc6	100	56.209	Ictalurus_punctatus
ENSMUSG00000022471	Xrcc6	100	86.864	ENSSTOG00000009490	XRCC6	100	87.192	Ictidomys_tridecemlineatus
ENSMUSG00000022471	Xrcc6	100	81.117	ENSJJAG00000017136	Xrcc6	100	81.938	Jaculus_jaculus
ENSMUSG00000022471	Xrcc6	99	57.795	ENSKMAG00000002141	xrcc6	99	57.049	Kryptolebias_marmoratus
ENSMUSG00000022471	Xrcc6	99	58.935	ENSLBEG00000002691	xrcc6	99	57.377	Labrus_bergylta
ENSMUSG00000022471	Xrcc6	89	60.396	ENSLOCG00000011533	xrcc6	99	60.396	Lepisosteus_oculatus
ENSMUSG00000022471	Xrcc6	99	82.895	ENSMFAG00000003352	XRCC6	99	82.895	Macaca_fascicularis
ENSMUSG00000022471	Xrcc6	99	82.895	ENSMMUG00000001856	XRCC6	99	82.895	Macaca_mulatta
ENSMUSG00000022471	Xrcc6	99	82.895	ENSMNEG00000035076	XRCC6	99	82.895	Macaca_nemestrina
ENSMUSG00000022471	Xrcc6	99	82.895	ENSMLEG00000019869	XRCC6	99	82.895	Mandrillus_leucophaeus
ENSMUSG00000022471	Xrcc6	99	58.333	ENSMAMG00000003368	xrcc6	99	55.810	Mastacembelus_armatus
ENSMUSG00000022471	Xrcc6	99	57.576	ENSMAMG00000003405	xrcc6	97	55.461	Mastacembelus_armatus
ENSMUSG00000022471	Xrcc6	99	59.696	ENSMZEG00005028080	xrcc6	99	57.213	Maylandia_zebra
ENSMUSG00000022471	Xrcc6	99	66.923	ENSMGAG00000012146	XRCC6	99	66.395	Meleagris_gallopavo
ENSMUSG00000022471	Xrcc6	99	92.257	ENSMAUG00000017340	Xrcc6	100	92.257	Mesocricetus_auratus
ENSMUSG00000022471	Xrcc6	99	91.104	ENSMOCG00000015717	Xrcc6	100	91.104	Microtus_ochrogaster
ENSMUSG00000022471	Xrcc6	97	59.459	ENSMMOG00000003536	xrcc6	99	55.446	Mola_mola
ENSMUSG00000022471	Xrcc6	99	61.597	ENSMALG00000013912	xrcc6	95	58.361	Monopterus_albus
ENSMUSG00000022471	Xrcc6	100	93.257	MGP_CAROLIEiJ_G0020067	Xrcc6	100	93.257	Mus_caroli
ENSMUSG00000022471	Xrcc6	100	97.204	MGP_PahariEiJ_G0020069	Xrcc6	100	97.204	Mus_pahari
ENSMUSG00000022471	Xrcc6	100	98.106	MGP_SPRETEiJ_G0020967	Xrcc6	100	98.799	Mus_spretus
ENSMUSG00000022471	Xrcc6	100	89.145	ENSNGAG00000013750	Xrcc6	100	89.145	Nannospalax_galili
ENSMUSG00000022471	Xrcc6	99	60.076	ENSNBRG00000004125	xrcc6	99	57.541	Neolamprologus_brichardi
ENSMUSG00000022471	Xrcc6	81	78.873	ENSNLEG00000034343	-	95	78.873	Nomascus_leucogenys
ENSMUSG00000022471	Xrcc6	99	81.154	ENSOPRG00000002386	XRCC6	99	84.283	Ochotona_princeps
ENSMUSG00000022471	Xrcc6	100	82.594	ENSODEG00000015847	XRCC6	100	82.594	Octodon_degus
ENSMUSG00000022471	Xrcc6	99	59.696	ENSONIG00000019715	xrcc6	99	57.541	Oreochromis_niloticus
ENSMUSG00000022471	Xrcc6	100	74.905	ENSOANG00000011328	XRCC6	100	77.536	Ornithorhynchus_anatinus
ENSMUSG00000022471	Xrcc6	99	85.832	ENSOCUG00000006948	XRCC6	99	86.491	Oryctolagus_cuniculus
ENSMUSG00000022471	Xrcc6	99	57.576	ENSORLG00020007820	xrcc6	99	57.119	Oryzias_latipes_hni
ENSMUSG00000022471	Xrcc6	99	57.576	ENSORLG00015006406	xrcc6	99	56.956	Oryzias_latipes_hsok
ENSMUSG00000022471	Xrcc6	99	57.576	ENSOMEG00000008998	xrcc6	99	57.190	Oryzias_melastigma
ENSMUSG00000022471	Xrcc6	99	84.539	ENSOGAG00000008821	XRCC6	100	84.704	Otolemur_garnettii
ENSMUSG00000022471	Xrcc6	99	80.843	ENSPPAG00000037167	XRCC6	97	69.797	Pan_paniscus
ENSMUSG00000022471	Xrcc6	81	79.343	ENSPPAG00000043936	-	95	79.343	Pan_paniscus
ENSMUSG00000022471	Xrcc6	81	79.343	ENSPTRG00000040111	-	95	79.343	Pan_troglodytes
ENSMUSG00000022471	Xrcc6	81	79.343	ENSPTRG00000043309	-	95	79.343	Pan_troglodytes
ENSMUSG00000022471	Xrcc6	99	83.224	ENSPTRG00000045824	XRCC6	99	84.337	Pan_troglodytes
ENSMUSG00000022471	Xrcc6	99	83.224	ENSPTRG00000022548	XRCC6	99	84.337	Pan_troglodytes
ENSMUSG00000022471	Xrcc6	99	82.730	ENSPANG00000001252	XRCC6	99	83.821	Papio_anubis
ENSMUSG00000022471	Xrcc6	99	63.774	ENSPKIG00000003974	xrcc6	100	60.294	Paramormyrops_kingsleyae
ENSMUSG00000022471	Xrcc6	97	69.531	ENSPSIG00000016499	-	99	69.531	Pelodiscus_sinensis
ENSMUSG00000022471	Xrcc6	97	58.594	ENSPMGG00000014220	xrcc6	100	55.887	Periophthalmus_magnuspinnatus
ENSMUSG00000022471	Xrcc6	100	91.283	ENSPEMG00000023446	Xrcc6	100	91.283	Peromyscus_maniculatus_bairdii
ENSMUSG00000022471	Xrcc6	99	78.125	ENSPCIG00000026409	XRCC6	99	77.833	Phascolarctos_cinereus
ENSMUSG00000022471	Xrcc6	99	59.316	ENSPFOG00000017173	xrcc6	99	57.541	Poecilia_formosa
ENSMUSG00000022471	Xrcc6	99	59.316	ENSPLAG00000000562	xrcc6	99	57.213	Poecilia_latipinna
ENSMUSG00000022471	Xrcc6	99	59.316	ENSPMEG00000018478	xrcc6	99	57.705	Poecilia_mexicana
ENSMUSG00000022471	Xrcc6	99	60.000	ENSPREG00000020957	xrcc6	93	57.680	Poecilia_reticulata
ENSMUSG00000022471	Xrcc6	99	73.520	ENSPPYG00000011876	XRCC6	99	73.520	Pongo_abelii
ENSMUSG00000022471	Xrcc6	100	83.717	ENSPVAG00000001168	XRCC6	100	83.717	Pteropus_vampyrus
ENSMUSG00000022471	Xrcc6	99	59.696	ENSPNYG00000003815	xrcc6	99	54.446	Pundamilia_nyererei
ENSMUSG00000022471	Xrcc6	100	94.079	ENSRNOG00000006392	Xrcc6	100	94.079	Rattus_norvegicus
ENSMUSG00000022471	Xrcc6	99	80.460	ENSRBIG00000039794	XRCC6	99	76.316	Rhinopithecus_bieti
ENSMUSG00000022471	Xrcc6	81	74.648	ENSRROG00000037576	-	95	74.648	Rhinopithecus_roxellana
ENSMUSG00000022471	Xrcc6	99	82.895	ENSRROG00000030297	XRCC6	99	82.895	Rhinopithecus_roxellana
ENSMUSG00000022471	Xrcc6	76	70.647	ENSSBOG00000025802	-	90	70.647	Saimiri_boliviensis_boliviensis
ENSMUSG00000022471	Xrcc6	88	79.741	ENSSBOG00000024724	-	99	69.704	Saimiri_boliviensis_boliviensis
ENSMUSG00000022471	Xrcc6	99	77.340	ENSSHAG00000010790	XRCC6	99	77.668	Sarcophilus_harrisii
ENSMUSG00000022471	Xrcc6	99	62.264	ENSSFOG00015014409	xrcc6	100	60.131	Scleropages_formosus
ENSMUSG00000022471	Xrcc6	99	60.076	ENSSMAG00000006496	xrcc6	99	57.705	Scophthalmus_maximus
ENSMUSG00000022471	Xrcc6	99	59.696	ENSSDUG00000007542	xrcc6	99	57.049	Seriola_dumerili
ENSMUSG00000022471	Xrcc6	99	59.316	ENSSLDG00000009974	xrcc6	99	56.885	Seriola_lalandi_dorsalis
ENSMUSG00000022471	Xrcc6	99	73.727	ENSSPUG00000012086	XRCC6	99	73.727	Sphenodon_punctatus
ENSMUSG00000022471	Xrcc6	99	58.935	ENSSPAG00000015199	xrcc6	99	56.721	Stegastes_partitus
ENSMUSG00000022471	Xrcc6	96	70.962	ENSTGUG00000009852	-	95	70.962	Taeniopygia_guttata
ENSMUSG00000022471	Xrcc6	99	59.696	ENSTRUG00000017070	xrcc6	99	55.829	Takifugu_rubripes
ENSMUSG00000022471	Xrcc6	99	59.851	ENSTNIG00000012947	xrcc6	99	57.530	Tetraodon_nigroviridis
ENSMUSG00000022471	Xrcc6	95	77.586	ENSTBEG00000011736	XRCC6	99	77.453	Tupaia_belangeri
ENSMUSG00000022471	Xrcc6	99	69.243	ENSTTRG00000006749	XRCC6	90	85.535	Tursiops_truncatus
ENSMUSG00000022471	Xrcc6	99	60.456	ENSXMAG00000009691	xrcc6	99	57.705	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000723	telomere maintenance	21873635.	IBA	Process
GO:0000784	nuclear chromosome, telomeric region	21873635.	IBA	Component
GO:0002218	activation of innate immune response	-	ISO	Process
GO:0002376	immune system process	-	IEA	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0003684	damaged DNA binding	-	IEA	Function
GO:0003690	double-stranded DNA binding	21873635.	IBA	Function
GO:0003690	double-stranded DNA binding	20150414.	IDA	Function
GO:0003690	double-stranded DNA binding	-	ISO	Function
GO:0003691	double-stranded telomeric DNA binding	-	ISO	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0004003	ATP-dependent DNA helicase activity	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005515	protein binding	12551933.23685356.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	12604618.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005667	transcription factor complex	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	12604618.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006302	double-strand break repair	11751629.	IMP	Process
GO:0006303	double-strand break repair via nonhomologous end joining	21873635.	IBA	Process
GO:0006303	double-strand break repair via nonhomologous end joining	11751629.	IMP	Process
GO:0006303	double-strand break repair via nonhomologous end joining	-	ISO	Process
GO:0006310	DNA recombination	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	15979950.	IMP	Process
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0008152	metabolic process	-	IEA	Process
GO:0010212	response to ionizing radiation	15979950.21568942.	IMP	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0016829	lyase activity	-	IEA	Function
GO:0030332	cyclin binding	-	ISO	Function
GO:0032991	protein-containing complex	-	ISO	Component
GO:0032993	protein-DNA complex	-	ISO	Component
GO:0033151	V(D)J recombination	10716994.	IMP	Process
GO:0042162	telomeric DNA binding	21873635.	IBA	Function
GO:0043564	Ku70:Ku80 complex	21873635.	IBA	Component
GO:0043564	Ku70:Ku80 complex	-	ISO	Component
GO:0044212	transcription regulatory region DNA binding	-	ISO	Function
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0045087	innate immune response	-	IEA	Process
GO:0045860	positive regulation of protein kinase activity	-	ISO	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0048660	regulation of smooth muscle cell proliferation	-	ISO	Process
GO:0050769	positive regulation of neurogenesis	10716994.	IMP	Process
GO:0051290	protein heterotetramerization	-	ISO	Process
GO:0051575	5'-deoxyribose-5-phosphate lyase activity	-	ISO	Function
GO:0070419	nonhomologous end joining complex	-	ISO	Component
GO:0071475	cellular hyperosmotic salinity response	-	ISO	Process
GO:0071480	cellular response to gamma radiation	21873635.	IBA	Process
GO:0071480	cellular response to gamma radiation	-	ISO	Process
GO:0071481	cellular response to X-ray	21873635.	IBA	Process
GO:0071481	cellular response to X-ray	-	ISO	Process
GO:0097680	double-strand break repair via classical nonhomologous end joining	-	ISO	Process