EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000022476 (Gene tree)
Gene ID: 78929
Gene Symbol: Polr3h
Alias: 5031409G22Rik|RPC8
Full Name: polymerase (RNA) III (DNA directed) polypeptide H
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 38013 bases
Position: chr15:81888228-81926240
Accession: 1926179
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000023113	RNA_pol_Rbc25	PF08292.12	1.2e-42	1	1
ENSMUSP00000155181	RNA_pol_Rbc25	PF08292.12	3e-34	1	1
ENSMUSP00000023113	SHS2_Rpb7-N	PF03876.17	1.5e-19	1	1
ENSMUSP00000155181	SHS2_Rpb7-N	PF03876.17	9.8e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000230842	-	498	-	-	- (aa)	-	-
ENSMUST00000230066	-	438	-	-	- (aa)	-	-
ENSMUST00000230669	-	3030	-	-	- (aa)	-	-
ENSMUST00000023113	-	2542	-	ENSMUSP00000023113	204 (aa)	-	Q9D2C6
ENSMUST00000230765	-	1290	-	-	- (aa)	-	-
ENSMUST00000229402	-	985	-	-	- (aa)	-	-
ENSMUST00000230050	-	765	-	ENSMUSP00000155181	175 (aa)	-	A0A2R8VK29

Gene Model

Click here to download ENSMUSG00000022476's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03020	RNA polymerase	KEGG
mmu04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000022476's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000022476	Polr3h	100	98.286	ENSG00000100413	POLR3H	99	100.000	Homo_sapiens
ENSMUSG00000022476	Polr3h	99	77.880	ENSAPOG00000011407	polr3h	100	77.419	Acanthochromis_polyacanthus
ENSMUSG00000022476	Polr3h	100	98.529	ENSAMEG00000015630	POLR3H	100	98.529	Ailuropoda_melanoleuca
ENSMUSG00000022476	Polr3h	99	78.818	ENSACIG00000010128	polr3h	100	78.818	Amphilophus_citrinellus
ENSMUSG00000022476	Polr3h	99	80.374	ENSAOCG00000019002	polr3h	100	80.841	Amphiprion_ocellaris
ENSMUSG00000022476	Polr3h	99	79.907	ENSAPEG00000012507	polr3h	100	80.374	Amphiprion_percula
ENSMUSG00000022476	Polr3h	99	78.505	ENSATEG00000008085	polr3h	100	78.505	Anabas_testudineus
ENSMUSG00000022476	Polr3h	100	84.689	ENSAPLG00000005063	POLR3H	100	86.124	Anas_platyrhynchos
ENSMUSG00000022476	Polr3h	100	86.893	ENSACAG00000011213	POLR3H	100	87.864	Anolis_carolinensis
ENSMUSG00000022476	Polr3h	100	99.020	ENSANAG00000025122	POLR3H	100	99.020	Aotus_nancymaae
ENSMUSG00000022476	Polr3h	99	78.972	ENSACLG00000014650	polr3h	100	78.972	Astatotilapia_calliptera
ENSMUSG00000022476	Polr3h	99	83.744	ENSAMXG00000015544	polr3h	100	83.744	Astyanax_mexicanus
ENSMUSG00000022476	Polr3h	100	98.039	ENSBTAG00000005311	POLR3H	100	98.039	Bos_taurus
ENSMUSG00000022476	Polr3h	99	39.409	WBGene00014111	rpc-25	82	38.350	Caenorhabditis_elegans
ENSMUSG00000022476	Polr3h	100	97.549	ENSCJAG00000005072	POLR3H	100	97.549	Callithrix_jacchus
ENSMUSG00000022476	Polr3h	100	97.549	ENSCAFG00000001053	POLR3H	100	97.549	Canis_familiaris
ENSMUSG00000022476	Polr3h	100	97.549	ENSCAFG00020001964	POLR3H	100	97.549	Canis_lupus_dingo
ENSMUSG00000022476	Polr3h	100	97.059	ENSCHIG00000013984	POLR3H	100	97.059	Capra_hircus
ENSMUSG00000022476	Polr3h	100	99.020	ENSTSYG00000003484	POLR3H	100	99.020	Carlito_syrichta
ENSMUSG00000022476	Polr3h	74	94.667	ENSCAPG00000003786	POLR3H	100	94.667	Cavia_aperea
ENSMUSG00000022476	Polr3h	100	94.118	ENSCPOG00000012650	POLR3H	100	94.118	Cavia_porcellus
ENSMUSG00000022476	Polr3h	100	99.020	ENSCCAG00000025802	POLR3H	100	99.020	Cebus_capucinus
ENSMUSG00000022476	Polr3h	100	98.529	ENSCATG00000018316	POLR3H	100	98.529	Cercocebus_atys
ENSMUSG00000022476	Polr3h	100	93.627	ENSCLAG00000016948	POLR3H	100	93.137	Chinchilla_lanigera
ENSMUSG00000022476	Polr3h	100	98.529	ENSCSAG00000005798	POLR3H	86	98.529	Chlorocebus_sabaeus
ENSMUSG00000022476	Polr3h	100	90.291	ENSCPBG00000020544	POLR3H	100	89.320	Chrysemys_picta_bellii
ENSMUSG00000022476	Polr3h	99	69.608	ENSCING00000012767	-	99	68.627	Ciona_intestinalis
ENSMUSG00000022476	Polr3h	99	67.488	ENSCSAVG00000010448	-	99	67.488	Ciona_savignyi
ENSMUSG00000022476	Polr3h	100	98.039	ENSCANG00000035073	POLR3H	100	98.039	Colobus_angolensis_palliatus
ENSMUSG00000022476	Polr3h	84	97.661	ENSCGRG00001023556	Polr3h	99	97.661	Cricetulus_griseus_chok1gshd
ENSMUSG00000022476	Polr3h	100	99.429	ENSCGRG00000017869	Polr3h	100	99.429	Cricetulus_griseus_crigri
ENSMUSG00000022476	Polr3h	92	78.788	ENSCSEG00000006721	polr3h	97	76.768	Cynoglossus_semilaevis
ENSMUSG00000022476	Polr3h	99	78.037	ENSCVAG00000010996	polr3h	100	77.570	Cyprinodon_variegatus
ENSMUSG00000022476	Polr3h	99	78.505	ENSDARG00000102590	polr3h	100	78.505	Danio_rerio
ENSMUSG00000022476	Polr3h	100	98.039	ENSDNOG00000025527	POLR3H	100	98.039	Dasypus_novemcinctus
ENSMUSG00000022476	Polr3h	100	98.529	ENSDORG00000002215	Polr3h	100	98.529	Dipodomys_ordii
ENSMUSG00000022476	Polr3h	99	55.660	FBgn0036188	CG7339	88	56.604	Drosophila_melanogaster
ENSMUSG00000022476	Polr3h	100	95.588	ENSETEG00000010746	POLR3H	100	95.588	Echinops_telfairi
ENSMUSG00000022476	Polr3h	99	73.516	ENSEBUG00000005511	polr3h	100	72.146	Eptatretus_burgeri
ENSMUSG00000022476	Polr3h	100	98.039	ENSEASG00005001539	POLR3H	100	98.039	Equus_asinus_asinus
ENSMUSG00000022476	Polr3h	100	97.714	ENSECAG00000019715	POLR3H	100	97.714	Equus_caballus
ENSMUSG00000022476	Polr3h	100	93.659	ENSEEUG00000010464	POLR3H	100	93.171	Erinaceus_europaeus
ENSMUSG00000022476	Polr3h	99	80.769	ENSELUG00000007834	polr3h	100	80.769	Esox_lucius
ENSMUSG00000022476	Polr3h	100	98.529	ENSFCAG00000006684	POLR3H	100	98.529	Felis_catus
ENSMUSG00000022476	Polr3h	100	89.320	ENSFALG00000011952	POLR3H	100	88.350	Ficedula_albicollis
ENSMUSG00000022476	Polr3h	100	94.118	ENSFDAG00000008844	POLR3H	100	94.118	Fukomys_damarensis
ENSMUSG00000022476	Polr3h	99	78.972	ENSFHEG00000020517	polr3h	100	78.972	Fundulus_heteroclitus
ENSMUSG00000022476	Polr3h	99	74.299	ENSGMOG00000001934	polr3h	100	74.537	Gadus_morhua
ENSMUSG00000022476	Polr3h	100	88.835	ENSGALG00000011947	POLR3H	100	87.864	Gallus_gallus
ENSMUSG00000022476	Polr3h	99	80.841	ENSGAFG00000010908	polr3h	100	80.374	Gambusia_affinis
ENSMUSG00000022476	Polr3h	99	76.636	ENSGACG00000007549	polr3h	100	76.636	Gasterosteus_aculeatus
ENSMUSG00000022476	Polr3h	100	89.806	ENSGAGG00000017507	POLR3H	100	88.835	Gopherus_agassizii
ENSMUSG00000022476	Polr3h	100	98.286	ENSGGOG00000038191	POLR3H	100	98.286	Gorilla_gorilla
ENSMUSG00000022476	Polr3h	99	78.972	ENSHBUG00000017295	polr3h	100	78.972	Haplochromis_burtoni
ENSMUSG00000022476	Polr3h	100	92.157	ENSHGLG00000014795	POLR3H	100	92.157	Heterocephalus_glaber_female
ENSMUSG00000022476	Polr3h	100	92.157	ENSHGLG00100014750	POLR3H	100	92.157	Heterocephalus_glaber_male
ENSMUSG00000022476	Polr3h	99	77.465	ENSHCOG00000006814	polr3h	100	77.465	Hippocampus_comes
ENSMUSG00000022476	Polr3h	99	78.505	ENSIPUG00000019750	polr3h	99	78.873	Ictalurus_punctatus
ENSMUSG00000022476	Polr3h	100	99.510	ENSSTOG00000016215	POLR3H	100	99.510	Ictidomys_tridecemlineatus
ENSMUSG00000022476	Polr3h	100	98.529	ENSJJAG00000017986	Polr3h	100	98.529	Jaculus_jaculus
ENSMUSG00000022476	Polr3h	99	78.972	ENSKMAG00000014797	polr3h	100	78.505	Kryptolebias_marmoratus
ENSMUSG00000022476	Polr3h	99	75.862	ENSLBEG00000010889	polr3h	100	76.355	Labrus_bergylta
ENSMUSG00000022476	Polr3h	100	87.019	ENSLACG00000011734	POLR3H	100	86.058	Latimeria_chalumnae
ENSMUSG00000022476	Polr3h	93	79.397	ENSLOCG00000011621	polr3h	86	77.340	Lepisosteus_oculatus
ENSMUSG00000022476	Polr3h	100	97.059	ENSLAFG00000006033	POLR3H	100	97.059	Loxodonta_africana
ENSMUSG00000022476	Polr3h	100	98.529	ENSMFAG00000001153	POLR3H	100	98.529	Macaca_fascicularis
ENSMUSG00000022476	Polr3h	100	98.529	ENSMMUG00000001459	POLR3H	100	98.529	Macaca_mulatta
ENSMUSG00000022476	Polr3h	100	98.529	ENSMNEG00000022264	POLR3H	100	98.529	Macaca_nemestrina
ENSMUSG00000022476	Polr3h	82	97.619	ENSMLEG00000024568	POLR3H	99	97.619	Mandrillus_leucophaeus
ENSMUSG00000022476	Polr3h	99	79.439	ENSMAMG00000007445	polr3h	100	79.439	Mastacembelus_armatus
ENSMUSG00000022476	Polr3h	99	78.972	ENSMZEG00005003756	polr3h	100	78.972	Maylandia_zebra
ENSMUSG00000022476	Polr3h	100	86.603	ENSMGAG00000012126	POLR3H	100	85.646	Meleagris_gallopavo
ENSMUSG00000022476	Polr3h	100	99.510	ENSMAUG00000022215	Polr3h	100	99.510	Mesocricetus_auratus
ENSMUSG00000022476	Polr3h	100	98.286	ENSMICG00000013546	POLR3H	100	98.286	Microcebus_murinus
ENSMUSG00000022476	Polr3h	100	99.020	ENSMOCG00000018747	Polr3h	100	99.020	Microtus_ochrogaster
ENSMUSG00000022476	Polr3h	99	79.803	ENSMMOG00000002705	polr3h	100	79.803	Mola_mola
ENSMUSG00000022476	Polr3h	100	94.118	ENSMODG00000016563	POLR3H	100	94.118	Monodelphis_domestica
ENSMUSG00000022476	Polr3h	99	79.803	ENSMALG00000013403	polr3h	100	79.803	Monopterus_albus
ENSMUSG00000022476	Polr3h	100	99.510	MGP_CAROLIEiJ_G0020063	Polr3h	100	99.510	Mus_caroli
ENSMUSG00000022476	Polr3h	100	99.510	MGP_PahariEiJ_G0020065	Polr3h	100	99.510	Mus_pahari
ENSMUSG00000022476	Polr3h	100	100.000	MGP_SPRETEiJ_G0020964	Polr3h	100	100.000	Mus_spretus
ENSMUSG00000022476	Polr3h	100	99.020	ENSMPUG00000016395	POLR3H	100	99.020	Mustela_putorius_furo
ENSMUSG00000022476	Polr3h	100	97.059	ENSMLUG00000002487	POLR3H	100	97.059	Myotis_lucifugus
ENSMUSG00000022476	Polr3h	100	97.549	ENSNGAG00000015009	Polr3h	100	97.549	Nannospalax_galili
ENSMUSG00000022476	Polr3h	92	78.788	ENSNBRG00000003286	polr3h	87	78.788	Neolamprologus_brichardi
ENSMUSG00000022476	Polr3h	100	98.039	ENSNLEG00000015536	POLR3H	100	98.039	Nomascus_leucogenys
ENSMUSG00000022476	Polr3h	100	91.176	ENSMEUG00000002041	POLR3H	99	91.176	Notamacropus_eugenii
ENSMUSG00000022476	Polr3h	99	78.972	ENSONIG00000008444	polr3h	100	78.972	Oreochromis_niloticus
ENSMUSG00000022476	Polr3h	100	88.725	ENSOANG00000004374	-	100	88.725	Ornithorhynchus_anatinus
ENSMUSG00000022476	Polr3h	100	98.039	ENSOCUG00000007275	POLR3H	100	98.039	Oryctolagus_cuniculus
ENSMUSG00000022476	Polr3h	99	78.037	ENSORLG00000014160	polr3h	100	78.037	Oryzias_latipes
ENSMUSG00000022476	Polr3h	99	78.505	ENSORLG00020007765	polr3h	100	78.505	Oryzias_latipes_hni
ENSMUSG00000022476	Polr3h	99	78.505	ENSORLG00015019039	polr3h	100	78.505	Oryzias_latipes_hsok
ENSMUSG00000022476	Polr3h	99	77.570	ENSOMEG00000005764	polr3h	100	78.037	Oryzias_melastigma
ENSMUSG00000022476	Polr3h	100	97.549	ENSOGAG00000002850	-	100	97.549	Otolemur_garnettii
ENSMUSG00000022476	Polr3h	100	88.725	ENSOGAG00000030416	-	100	88.725	Otolemur_garnettii
ENSMUSG00000022476	Polr3h	100	97.059	ENSOARG00000018319	POLR3H	100	97.059	Ovis_aries
ENSMUSG00000022476	Polr3h	100	98.286	ENSPPAG00000031000	POLR3H	100	98.286	Pan_paniscus
ENSMUSG00000022476	Polr3h	100	98.529	ENSPPRG00000005361	POLR3H	100	98.529	Panthera_pardus
ENSMUSG00000022476	Polr3h	100	98.039	ENSPTIG00000016286	POLR3H	100	98.039	Panthera_tigris_altaica
ENSMUSG00000022476	Polr3h	100	98.286	ENSPTRG00000051865	POLR3H	100	98.286	Pan_troglodytes
ENSMUSG00000022476	Polr3h	100	98.529	ENSPANG00000015758	POLR3H	100	98.529	Papio_anubis
ENSMUSG00000022476	Polr3h	99	82.692	ENSPKIG00000008527	polr3h	100	84.135	Paramormyrops_kingsleyae
ENSMUSG00000022476	Polr3h	100	89.320	ENSPSIG00000008284	POLR3H	89	88.350	Pelodiscus_sinensis
ENSMUSG00000022476	Polr3h	100	71.163	ENSPMGG00000018036	polr3h	85	71.163	Periophthalmus_magnuspinnatus
ENSMUSG00000022476	Polr3h	100	98.529	ENSPEMG00000000726	Polr3h	100	98.529	Peromyscus_maniculatus_bairdii
ENSMUSG00000022476	Polr3h	84	69.399	ENSPMAG00000007847	polr3h	98	67.935	Petromyzon_marinus
ENSMUSG00000022476	Polr3h	100	98.551	ENSPCIG00000026413	POLR3H	100	72.973	Phascolarctos_cinereus
ENSMUSG00000022476	Polr3h	99	78.341	ENSPFOG00000013681	polr3h	100	78.802	Poecilia_formosa
ENSMUSG00000022476	Polr3h	99	80.374	ENSPLAG00000017503	polr3h	100	80.841	Poecilia_latipinna
ENSMUSG00000022476	Polr3h	99	79.907	ENSPMEG00000018334	polr3h	100	80.374	Poecilia_mexicana
ENSMUSG00000022476	Polr3h	51	82.022	ENSPREG00000007035	-	91	44.444	Poecilia_reticulata
ENSMUSG00000022476	Polr3h	100	97.059	ENSPPYG00000011872	-	100	97.059	Pongo_abelii
ENSMUSG00000022476	Polr3h	100	96.569	ENSPPYG00000010689	-	100	96.569	Pongo_abelii
ENSMUSG00000022476	Polr3h	58	97.479	ENSPCAG00000009882	POLR3H	58	97.479	Procavia_capensis
ENSMUSG00000022476	Polr3h	100	98.857	ENSPCOG00000013751	POLR3H	100	98.857	Propithecus_coquereli
ENSMUSG00000022476	Polr3h	100	97.549	ENSPVAG00000001164	POLR3H	100	97.549	Pteropus_vampyrus
ENSMUSG00000022476	Polr3h	99	78.972	ENSPNYG00000024040	polr3h	100	78.972	Pundamilia_nyererei
ENSMUSG00000022476	Polr3h	99	79.343	ENSPNAG00000004860	polr3h	100	78.873	Pygocentrus_nattereri
ENSMUSG00000022476	Polr3h	100	100.000	ENSRNOG00000004471	Polr3h	100	100.000	Rattus_norvegicus
ENSMUSG00000022476	Polr3h	100	86.275	ENSRBIG00000040089	POLR3H	100	86.275	Rhinopithecus_bieti
ENSMUSG00000022476	Polr3h	100	98.039	ENSRROG00000033728	POLR3H	100	98.039	Rhinopithecus_roxellana
ENSMUSG00000022476	Polr3h	99	43.458	YKL144C	RPC25	99	42.991	Saccharomyces_cerevisiae
ENSMUSG00000022476	Polr3h	100	98.529	ENSSBOG00000020652	POLR3H	100	98.529	Saimiri_boliviensis_boliviensis
ENSMUSG00000022476	Polr3h	100	93.627	ENSSHAG00000010196	POLR3H	100	93.627	Sarcophilus_harrisii
ENSMUSG00000022476	Polr3h	99	84.135	ENSSFOG00015011506	polr3h	100	82.692	Scleropages_formosus
ENSMUSG00000022476	Polr3h	99	76.168	ENSSMAG00000005784	polr3h	100	76.168	Scophthalmus_maximus
ENSMUSG00000022476	Polr3h	99	78.140	ENSSDUG00000014946	polr3h	100	77.674	Seriola_dumerili
ENSMUSG00000022476	Polr3h	99	77.674	ENSSLDG00000018207	polr3h	100	77.209	Seriola_lalandi_dorsalis
ENSMUSG00000022476	Polr3h	100	91.667	ENSSPUG00000011619	POLR3H	100	90.196	Sphenodon_punctatus
ENSMUSG00000022476	Polr3h	99	79.439	ENSSPAG00000017974	polr3h	100	79.907	Stegastes_partitus
ENSMUSG00000022476	Polr3h	100	98.039	ENSSSCG00000000063	POLR3H	100	98.039	Sus_scrofa
ENSMUSG00000022476	Polr3h	100	88.517	ENSTGUG00000009901	POLR3H	100	87.560	Taeniopygia_guttata
ENSMUSG00000022476	Polr3h	99	79.535	ENSTRUG00000004012	polr3h	100	79.070	Takifugu_rubripes
ENSMUSG00000022476	Polr3h	99	77.778	ENSTNIG00000004956	polr3h	100	76.852	Tetraodon_nigroviridis
ENSMUSG00000022476	Polr3h	100	96.569	ENSTBEG00000011425	POLR3H	100	96.569	Tupaia_belangeri
ENSMUSG00000022476	Polr3h	82	97.605	ENSTTRG00000003373	POLR3H	100	97.605	Tursiops_truncatus
ENSMUSG00000022476	Polr3h	100	99.020	ENSUAMG00000022585	POLR3H	100	99.020	Ursus_americanus
ENSMUSG00000022476	Polr3h	100	91.176	ENSUMAG00000021018	POLR3H	100	91.176	Ursus_maritimus
ENSMUSG00000022476	Polr3h	100	97.549	ENSVVUG00000003543	POLR3H	100	97.549	Vulpes_vulpes
ENSMUSG00000022476	Polr3h	100	85.507	ENSXETG00000034216	polr3h	100	87.923	Xenopus_tropicalis
ENSMUSG00000022476	Polr3h	99	79.803	ENSXCOG00000016022	polr3h	100	80.788	Xiphophorus_couchianus
ENSMUSG00000022476	Polr3h	99	79.535	ENSXMAG00000006921	polr3h	100	79.535	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001056	RNA polymerase III activity	21873635.	IBA	Function
GO:0002376	immune system process	-	IEA	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	21873635.	IBA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	-	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005666	RNA polymerase III complex	21873635.	IBA	Component
GO:0005666	RNA polymerase III complex	-	ISO	Component
GO:0005813	centrosome	-	ISO	Component
GO:0006139	nucleobase-containing compound metabolic process	-	ISO	Process
GO:0006351	transcription, DNA-templated	-	IEA	Process
GO:0006383	transcription by RNA polymerase III	-	ISO	Process
GO:0006384	transcription initiation from RNA polymerase III promoter	21873635.	IBA	Process
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0045087	innate immune response	-	IEA	Process
GO:0051607	defense response to virus	-	IEA	Process