EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000022538 (Gene tree)
Gene ID
224092
Gene Symbol
Lsg1
Alias
D16Bwg1547e
Full Name
large 60S subunit nuclear export GTPase 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
27099 bases
Position
chr16:30560494-30587592
Accession
107236
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000112860MMR_HSR1PF01926.231e-1311
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000128561-692--- (aa)--
ENSMUST00000124858-879--- (aa)--
ENSMUST00000144666-2724--- (aa)--
ENSMUST00000150499-2360--- (aa)--
ENSMUST00000129004-628--- (aa)--
ENSMUST00000143170-2272--- (aa)--
ENSMUST00000117363-3180-ENSMUSP00000112860644 (aa)-Q3UM18
ENSMUST00000123286-709--- (aa)--
ENSMUST00000231238-780--- (aa)--
Gene Model
Click here to download ENSMUSG00000022538's gene model file
Pathways
Pathway IDPathway NameSource
mmu03008Ribosome biogenesis in eukaryotesKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000022538's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000022538Lsg16630.227ENSMUSG00000024429Gnl16530.227
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000022538Lsg110081.763ENSG00000041802LSG19893.103Homo_sapiens
ENSMUSG00000022538Lsg110065.331ENSAPOG00000009694lsg110065.485Acanthochromis_polyacanthus
ENSMUSG00000022538Lsg110078.939ENSAMEG00000009343LSG110078.939Ailuropoda_melanoleuca
ENSMUSG00000022538Lsg19865.300ENSACIG00000012406lsg110064.110Amphilophus_citrinellus
ENSMUSG00000022538Lsg110064.915ENSAOCG00000016066lsg110064.606Amphiprion_ocellaris
ENSMUSG00000022538Lsg110065.842ENSAPEG00000003252lsg110065.688Amphiprion_percula
ENSMUSG00000022538Lsg19866.035ENSATEG00000011794lsg110065.944Anabas_testudineus
ENSMUSG00000022538Lsg19563.823ENSACAG00000004222LSG19963.091Anolis_carolinensis
ENSMUSG00000022538Lsg110083.131ENSANAG00000021153LSG110083.131Aotus_nancymaae
ENSMUSG00000022538Lsg110064.091ENSACLG00000000520lsg110062.556Astatotilapia_calliptera
ENSMUSG00000022538Lsg19965.244ENSAMXG00000008271lsg19964.787Astyanax_mexicanus
ENSMUSG00000022538Lsg110081.135ENSBTAG00000008461LSG110081.317Bos_taurus
ENSMUSG00000022538Lsg16949.000WBGene00016907C53H9.29254.545Caenorhabditis_elegans
ENSMUSG00000022538Lsg110083.131ENSCJAG00000013962LSG110083.131Callithrix_jacchus
ENSMUSG00000022538Lsg19579.393ENSCAFG00000013445LSG110079.393Canis_familiaris
ENSMUSG00000022538Lsg110078.248ENSCAFG00020002216LSG110078.248Canis_lupus_dingo
ENSMUSG00000022538Lsg110081.889ENSCHIG00000015769LSG110081.889Capra_hircus
ENSMUSG00000022538Lsg110082.701ENSTSYG00000001447LSG110082.549Carlito_syrichta
ENSMUSG00000022538Lsg19576.823ENSCAPG00000009856LSG110076.710Cavia_aperea
ENSMUSG00000022538Lsg110082.219ENSCCAG00000035744LSG110082.219Cebus_capucinus
ENSMUSG00000022538Lsg110082.094ENSCATG00000042060LSG110080.547Cercocebus_atys
ENSMUSG00000022538Lsg110082.549ENSCSAG00000008796LSG19282.371Chlorocebus_sabaeus
ENSMUSG00000022538Lsg110069.037ENSCPBG00000015941LSG18368.945Chrysemys_picta_bellii
ENSMUSG00000022538Lsg17363.684ENSCING00000007079-9963.684Ciona_intestinalis
ENSMUSG00000022538Lsg16864.062ENSCSAVG00000002514-8962.755Ciona_savignyi
ENSMUSG00000022538Lsg110081.942ENSCANG00000030709LSG110081.763Colobus_angolensis_palliatus
ENSMUSG00000022538Lsg110088.190ENSCGRG00001019846Lsg110088.344Cricetulus_griseus_chok1gshd
ENSMUSG00000022538Lsg110088.190ENSCGRG00000014617Lsg110088.344Cricetulus_griseus_crigri
ENSMUSG00000022538Lsg19864.577ENSCSEG00000008522lsg110064.209Cynoglossus_semilaevis
ENSMUSG00000022538Lsg19867.143ENSCVAG00000002484lsg110066.718Cyprinodon_variegatus
ENSMUSG00000022538Lsg110067.538ENSDARG00000015352lsg110067.593Danio_rerio
ENSMUSG00000022538Lsg110079.452ENSDNOG00000006224LSG110078.995Dasypus_novemcinctus
ENSMUSG00000022538Lsg19948.694FBgn0266284Ns39948.471Drosophila_melanogaster
ENSMUSG00000022538Lsg18886.667ENSETEG00000003888LSG18986.667Echinops_telfairi
ENSMUSG00000022538Lsg18856.853ENSEBUG00000003119lsg18556.729Eptatretus_burgeri
ENSMUSG00000022538Lsg110081.942ENSEASG00005000678LSG110081.942Equus_asinus_asinus
ENSMUSG00000022538Lsg110082.246ENSECAG00000017659LSG110082.246Equus_caballus
ENSMUSG00000022538Lsg18776.923ENSEEUG00000015217LSG18776.923Erinaceus_europaeus
ENSMUSG00000022538Lsg110063.482ENSELUG00000023973lsg110063.482Esox_lucius
ENSMUSG00000022538Lsg110081.184ENSFCAG00000024957LSG110080.880Felis_catus
ENSMUSG00000022538Lsg19964.231ENSFALG00000007210LSG19963.927Ficedula_albicollis
ENSMUSG00000022538Lsg110079.070ENSFDAG00000017373LSG110079.070Fukomys_damarensis
ENSMUSG00000022538Lsg19765.517ENSFHEG00000003680lsg19964.869Fundulus_heteroclitus
ENSMUSG00000022538Lsg18372.269ENSGMOG00000015834lsg19169.767Gadus_morhua
ENSMUSG00000022538Lsg19965.809ENSGALG00000007058LSG18765.913Gallus_gallus
ENSMUSG00000022538Lsg19766.029ENSGAFG00000015831lsg19965.789Gambusia_affinis
ENSMUSG00000022538Lsg19864.465ENSGACG00000009323lsg110063.482Gasterosteus_aculeatus
ENSMUSG00000022538Lsg110081.639ENSGGOG00000000520LSG110081.459Gorilla_gorilla
ENSMUSG00000022538Lsg110064.482ENSHBUG00000005659lsg110063.308Haplochromis_burtoni
ENSMUSG00000022538Lsg110078.120ENSHGLG00000017390LSG110076.947Heterocephalus_glaber_female
ENSMUSG00000022538Lsg110077.966ENSHGLG00100018587LSG110076.794Heterocephalus_glaber_male
ENSMUSG00000022538Lsg19865.197ENSHCOG00000016848lsg110064.407Hippocampus_comes
ENSMUSG00000022538Lsg110066.718ENSIPUG00000008631lsg110066.409Ictalurus_punctatus
ENSMUSG00000022538Lsg18181.818ENSSTOG00000010234LSG19981.818Ictidomys_tridecemlineatus
ENSMUSG00000022538Lsg19982.636ENSJJAG00000015513Lsg19981.860Jaculus_jaculus
ENSMUSG00000022538Lsg19864.715ENSKMAG00000009681lsg110064.142Kryptolebias_marmoratus
ENSMUSG00000022538Lsg19864.659ENSLBEG00000024261lsg110064.286Labrus_bergylta
ENSMUSG00000022538Lsg110065.672ENSLACG00000013399LSG110066.316Latimeria_chalumnae
ENSMUSG00000022538Lsg19866.615ENSLOCG00000004918lsg110065.906Lepisosteus_oculatus
ENSMUSG00000022538Lsg110081.269ENSLAFG00000012919-10081.269Loxodonta_africana
ENSMUSG00000022538Lsg110082.246ENSMFAG00000039903LSG110080.699Macaca_fascicularis
ENSMUSG00000022538Lsg110082.398ENSMMUG00000010708LSG110082.219Macaca_mulatta
ENSMUSG00000022538Lsg110082.398ENSMNEG00000031538LSG110080.851Macaca_nemestrina
ENSMUSG00000022538Lsg110082.067ENSMLEG00000041184LSG110082.067Mandrillus_leucophaeus
ENSMUSG00000022538Lsg110064.055ENSMAMG00000000470lsg110063.594Mastacembelus_armatus
ENSMUSG00000022538Lsg110064.634ENSMZEG00005017865lsg110063.459Maylandia_zebra
ENSMUSG00000022538Lsg18867.802ENSMGAG00000007050LSG19967.802Meleagris_gallopavo
ENSMUSG00000022538Lsg19684.380ENSMAUG00000016976Lsg19784.380Mesocricetus_auratus
ENSMUSG00000022538Lsg110081.555ENSMICG00000049087LSG110081.402Microcebus_murinus
ENSMUSG00000022538Lsg110085.168ENSMOCG00000022136Lsg110085.474Microtus_ochrogaster
ENSMUSG00000022538Lsg18573.333ENSMMOG00000008884lsg110063.665Mola_mola
ENSMUSG00000022538Lsg19961.256ENSMODG00000019828LSG19960.213Monodelphis_domestica
ENSMUSG00000022538Lsg110097.205MGP_CAROLIEiJ_G0020648Lsg110097.205Mus_caroli
ENSMUSG00000022538Lsg19895.455MGP_PahariEiJ_G0016352Lsg110094.915Mus_pahari
ENSMUSG00000022538Lsg110098.602MGP_SPRETEiJ_G0021544Lsg110098.602Mus_spretus
ENSMUSG00000022538Lsg110079.059ENSMPUG00000003734LSG110079.059Mustela_putorius_furo
ENSMUSG00000022538Lsg110082.695ENSMLUG00000012548LSG110082.542Myotis_lucifugus
ENSMUSG00000022538Lsg110083.717ENSNGAG00000021872Lsg110083.717Nannospalax_galili
ENSMUSG00000022538Lsg110082.246ENSNLEG00000008293LSG110082.219Nomascus_leucogenys
ENSMUSG00000022538Lsg17072.165ENSMEUG00000009041-8572.165Notamacropus_eugenii
ENSMUSG00000022538Lsg110063.982ENSONIG00000002635lsg110063.830Oreochromis_niloticus
ENSMUSG00000022538Lsg19572.408ENSOANG00000012742LSG19971.132Ornithorhynchus_anatinus
ENSMUSG00000022538Lsg110082.094ENSOCUG00000004817LSG110081.750Oryctolagus_cuniculus
ENSMUSG00000022538Lsg19864.873ENSORLG00000007695lsg110063.721Oryzias_latipes
ENSMUSG00000022538Lsg19865.190ENSORLG00020016286lsg110064.130Oryzias_latipes_hni
ENSMUSG00000022538Lsg19864.976ENSORLG00015012025lsg110063.975Oryzias_latipes_hsok
ENSMUSG00000022538Lsg19864.557ENSOMEG00000022379lsg110063.256Oryzias_melastigma
ENSMUSG00000022538Lsg110080.816ENSOGAG00000003475LSG110080.816Otolemur_garnettii
ENSMUSG00000022538Lsg110080.398ENSOARG00000020403LSG110079.817Ovis_aries
ENSMUSG00000022538Lsg110081.459ENSPPAG00000029271LSG110081.459Pan_paniscus
ENSMUSG00000022538Lsg110080.330ENSPPRG00000010281LSG110080.030Panthera_pardus
ENSMUSG00000022538Lsg110081.184ENSPTIG00000010789LSG110081.032Panthera_tigris_altaica
ENSMUSG00000022538Lsg110081.307ENSPTRG00000015760LSG110081.307Pan_troglodytes
ENSMUSG00000022538Lsg110082.549ENSPANG00000018249LSG110081.003Papio_anubis
ENSMUSG00000022538Lsg19864.873ENSPKIG00000002895lsg110063.775Paramormyrops_kingsleyae
ENSMUSG00000022538Lsg19666.406ENSPSIG00000009821LSG110066.299Pelodiscus_sinensis
ENSMUSG00000022538Lsg19565.691ENSPMGG00000000931lsg110065.041Periophthalmus_magnuspinnatus
ENSMUSG00000022538Lsg110086.850ENSPEMG00000012082-10086.391Peromyscus_maniculatus_bairdii
ENSMUSG00000022538Lsg19959.699ENSPMAG00000007451lsg19959.248Petromyzon_marinus
ENSMUSG00000022538Lsg110067.876ENSPCIG00000013890LSG18267.876Phascolarctos_cinereus
ENSMUSG00000022538Lsg19766.825ENSPFOG00000021882lsg19966.052Poecilia_formosa
ENSMUSG00000022538Lsg19766.035ENSPLAG00000019536lsg19965.284Poecilia_latipinna
ENSMUSG00000022538Lsg19766.142ENSPMEG00000017281lsg19965.391Poecilia_mexicana
ENSMUSG00000022538Lsg19757.585ENSPREG00000006048lsg19957.251Poecilia_reticulata
ENSMUSG00000022538Lsg19280.890ENSPPYG00000014425LSG110080.033Pongo_abelii
ENSMUSG00000022538Lsg19086.667ENSPCAG00000005511LSG19086.667Procavia_capensis
ENSMUSG00000022538Lsg110081.335ENSPCOG00000012360LSG110081.184Propithecus_coquereli
ENSMUSG00000022538Lsg110063.939ENSPNYG00000021994lsg110062.407Pundamilia_nyererei
ENSMUSG00000022538Lsg110065.653ENSPNAG00000015533lsg110065.244Pygocentrus_nattereri
ENSMUSG00000022538Lsg110091.298ENSRNOG00000001727Lsg110090.992Rattus_norvegicus
ENSMUSG00000022538Lsg110081.184ENSRBIG00000029053LSG110080.974Rhinopithecus_bieti
ENSMUSG00000022538Lsg110081.184ENSRROG00000037702LSG110080.974Rhinopithecus_roxellana
ENSMUSG00000022538Lsg18240.402YGL099WLSG16857.485Saccharomyces_cerevisiae
ENSMUSG00000022538Lsg110083.283ENSSBOG00000034938LSG110083.283Saimiri_boliviensis_boliviensis
ENSMUSG00000022538Lsg17867.429ENSSHAG00000003487LSG110067.048Sarcophilus_harrisii
ENSMUSG00000022538Lsg19865.512ENSSFOG00015008955lsg19965.070Scleropages_formosus
ENSMUSG00000022538Lsg19865.888ENSSDUG00000004622lsg110065.091Seriola_dumerili
ENSMUSG00000022538Lsg19866.246ENSSLDG00000010869lsg110065.688Seriola_lalandi_dorsalis
ENSMUSG00000022538Lsg18278.592ENSSARG00000012981LSG18177.259Sorex_araneus
ENSMUSG00000022538Lsg110069.532ENSSPUG00000016347LSG110068.929Sphenodon_punctatus
ENSMUSG00000022538Lsg110064.407ENSSPAG00000005508lsg110064.969Stegastes_partitus
ENSMUSG00000022538Lsg110081.115ENSSSCG00000011827LSG110080.805Sus_scrofa
ENSMUSG00000022538Lsg18964.765ENSTGUG00000009068LSG110064.597Taeniopygia_guttata
ENSMUSG00000022538Lsg19861.905ENSTRUG00000017380lsg110061.360Takifugu_rubripes
ENSMUSG00000022538Lsg19865.769ENSTNIG00000015570lsg110065.224Tetraodon_nigroviridis
ENSMUSG00000022538Lsg110073.853ENSTTRG00000000559LSG110073.242Tursiops_truncatus
ENSMUSG00000022538Lsg110080.121ENSUAMG00000012454LSG110080.121Ursus_americanus
ENSMUSG00000022538Lsg110080.121ENSUMAG00000000855LSG110080.121Ursus_maritimus
ENSMUSG00000022538Lsg19575.879ENSVPAG00000012400LSG110075.559Vicugna_pacos
ENSMUSG00000022538Lsg19578.275ENSVVUG00000008956LSG19778.275Vulpes_vulpes
ENSMUSG00000022538Lsg110066.156ENSXETG00000003451lsg110065.559Xenopus_tropicalis
ENSMUSG00000022538Lsg19765.506ENSXCOG00000003239lsg19965.278Xiphophorus_couchianus
ENSMUSG00000022538Lsg19765.331ENSXMAG00000005536lsg19964.812Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000166nucleotide binding-IEAFunction
GO:0003924GTPase activity-ISOFunction
GO:0005525GTP binding-ISOFunction
GO:0005634nucleus-ISOComponent
GO:0005737cytoplasm-IEAComponent
GO:0005783endoplasmic reticulum-ISOComponent
GO:0005829cytosol21873635.IBAComponent
GO:0005829cytosol-ISOComponent
GO:0015030Cajal body-ISOComponent
GO:0015031protein transport-IEAProcess
GO:0016604nuclear body-ISOComponent
GO:0016787hydrolase activity-IEAFunction
GO:0051168nuclear export-ISOProcess

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