EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000022565 (Gene tree)
Gene ID: 18810
Gene Symbol: Plec
Alias: Plec1
Full Name: plectin
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 61601 bases
Position: chr15:76170974-76232574
Accession: 1277961
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000126936	S10_plectin	PF03501.15	1.7e-35	1	1
ENSMUSP00000075772	S10_plectin	PF03501.15	4.7e-35	1	1
ENSMUSP00000073124	S10_plectin	PF03501.15	4.7e-35	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000165210	-	4937	-	ENSMUSP00000156565	1646 (aa)	-	UPI0001F78DF9
ENSMUST00000170728	-	254	-	ENSMUSP00000130948	43 (aa)	-	A0A0B4J1M3
ENSMUST00000089610	-	14972	-	ENSMUSP00000087037	4589 (aa)	-	Q9QXS1
ENSMUST00000165135	-	691	-	-	- (aa)	-	-
ENSMUST00000073418	-	15455	-	ENSMUSP00000073124	4691 (aa)	-	Q9QXS1
ENSMUST00000169108	-	14853	-	ENSMUSP00000126068	4511 (aa)	-	Q9QXS1
ENSMUST00000170915	-	316	-	ENSMUSP00000131946	53 (aa)	-	A0A0B4J1M7
ENSMUST00000074834	-	14855	-	ENSMUSP00000074383	4534 (aa)	-	Q9QXS1
ENSMUST00000023226	-	15001	-	ENSMUSP00000023226	4543 (aa)	-	Q9QXS1
ENSMUST00000080857	-	14959	-	ENSMUSP00000079668	4386 (aa)	-	E9Q3W4
ENSMUST00000167754	-	2219	-	ENSMUSP00000127867	702 (aa)	-	A0A0R4J221
ENSMUST00000169289	-	2099	-	ENSMUSP00000126912	499 (aa)	-	E9PW24
ENSMUST00000169714	-	15001	-	ENSMUSP00000126526	4543 (aa)	-	Q9QXS1
ENSMUST00000165453	-	2158	-	ENSMUSP00000127253	661 (aa)	-	A0A0R4J223
ENSMUST00000054449	-	15018	-	ENSMUSP00000057158	4548 (aa)	-	Q9QXS1
ENSMUST00000071869	-	14917	-	ENSMUSP00000071765	4521 (aa)	-	Q9QXS1
ENSMUST00000076442	-	15439	-	ENSMUSP00000075772	4686 (aa)	-	Q9QXS1
ENSMUST00000171634	-	3075	-	ENSMUSP00000126936	964 (aa)	-	A0A0R4J218
ENSMUST00000169438	-	14827	-	ENSMUSP00000127261	4386 (aa)	-	E9Q3W4
ENSMUST00000072692	-	14944	-	ENSMUSP00000072478	4550 (aa)	-	Q9QXS1
ENSMUST00000166428	-	2078	-	ENSMUSP00000130915	676 (aa)	-	E9Q9J6
ENSMUST00000171562	-	14944	-	ENSMUSP00000129543	4386 (aa)	-	E9Q3W4

Gene Model

Click here to download ENSMUSG00000022565's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000022565's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000022565	Plec	100	93.518	ENSG00000178209	PLEC	100	100.000	Homo_sapiens
ENSMUSG00000022565	Plec	100	93.005	ENSANAG00000032431	PLEC	100	93.005	Aotus_nancymaae
ENSMUSG00000022565	Plec	100	92.533	ENSBTAG00000011922	PLEC	100	92.533	Bos_taurus
ENSMUSG00000022565	Plec	100	93.303	ENSCJAG00000021472	PLEC	100	93.303	Callithrix_jacchus
ENSMUSG00000022565	Plec	100	92.519	ENSCAFG00000001433	PLEC	100	92.519	Canis_familiaris
ENSMUSG00000022565	Plec	88	92.420	ENSCHIG00000022260	PLEC	99	92.420	Capra_hircus
ENSMUSG00000022565	Plec	100	94.009	ENSTSYG00000033419	PLEC	100	94.009	Carlito_syrichta
ENSMUSG00000022565	Plec	100	91.805	ENSCAPG00000013570	PLEC	100	92.909	Cavia_aperea
ENSMUSG00000022565	Plec	100	95.021	ENSCPOG00000007957	PLEC	100	94.650	Cavia_porcellus
ENSMUSG00000022565	Plec	100	93.282	ENSCCAG00000031237	PLEC	100	93.282	Cebus_capucinus
ENSMUSG00000022565	Plec	100	93.881	ENSCATG00000009349	PLEC	100	93.881	Cercocebus_atys
ENSMUSG00000022565	Plec	100	95.851	ENSCLAG00000012830	PLEC	100	94.693	Chinchilla_lanigera
ENSMUSG00000022565	Plec	100	79.360	ENSCPBG00000021974	PLEC	99	72.699	Chrysemys_picta_bellii
ENSMUSG00000022565	Plec	100	97.925	ENSCGRG00001019864	Plec	100	97.464	Cricetulus_griseus_chok1gshd
ENSMUSG00000022565	Plec	100	96.694	ENSCGRG00000002714	Plec	100	96.694	Cricetulus_griseus_crigri
ENSMUSG00000022565	Plec	96	89.935	ENSDNOG00000031742	PLEC	99	89.935	Dasypus_novemcinctus
ENSMUSG00000022565	Plec	79	93.694	ENSETEG00000015535	-	62	93.694	Echinops_telfairi
ENSMUSG00000022565	Plec	83	96.636	ENSEEUG00000004554	-	67	96.942	Erinaceus_europaeus
ENSMUSG00000022565	Plec	100	92.319	ENSFCAG00000042897	PLEC	100	92.319	Felis_catus
ENSMUSG00000022565	Plec	100	95.643	ENSFDAG00000011856	PLEC	100	94.373	Fukomys_damarensis
ENSMUSG00000022565	Plec	100	92.761	ENSGGOG00000012217	PLEC	100	91.986	Gorilla_gorilla
ENSMUSG00000022565	Plec	100	95.228	ENSHGLG00000012646	PLEC	100	94.346	Heterocephalus_glaber_female
ENSMUSG00000022565	Plec	100	92.746	ENSHGLG00100011759	PLEC	100	83.368	Heterocephalus_glaber_male
ENSMUSG00000022565	Plec	100	93.849	ENSSTOG00000023061	PLEC	100	93.849	Ictidomys_tridecemlineatus
ENSMUSG00000022565	Plec	100	95.643	ENSJJAG00000012390	Plec	100	95.650	Jaculus_jaculus
ENSMUSG00000022565	Plec	100	93.859	ENSMFAG00000032066	PLEC	100	93.859	Macaca_fascicularis
ENSMUSG00000022565	Plec	100	92.761	ENSMMUG00000000388	PLEC	100	90.572	Macaca_mulatta
ENSMUSG00000022565	Plec	100	93.823	ENSMNEG00000011406	PLEC	100	93.817	Macaca_nemestrina
ENSMUSG00000022565	Plec	100	92.658	ENSMLEG00000033296	PLEC	100	93.363	Mandrillus_leucophaeus
ENSMUSG00000022565	Plec	100	97.303	ENSMAUG00000001116	Plec	100	97.272	Mesocricetus_auratus
ENSMUSG00000022565	Plec	100	93.669	ENSMICG00000016160	PLEC	100	93.669	Microcebus_murinus
ENSMUSG00000022565	Plec	100	97.614	ENSMOCG00000000674	Plec	100	97.251	Microtus_ochrogaster
ENSMUSG00000022565	Plec	100	99.793	MGP_CAROLIEiJ_G0019913	Plec	100	99.793	Mus_caroli
ENSMUSG00000022565	Plec	100	99.585	MGP_PahariEiJ_G0019923	Plec	100	99.585	Mus_pahari
ENSMUSG00000022565	Plec	100	99.896	MGP_SPRETEiJ_G0020816	Plec	100	99.896	Mus_spretus
ENSMUSG00000022565	Plec	100	90.506	ENSMPUG00000007329	PLEC	100	90.591	Mustela_putorius_furo
ENSMUSG00000022565	Plec	100	97.199	ENSNGAG00000008931	Plec	100	96.547	Nannospalax_galili
ENSMUSG00000022565	Plec	98	92.598	ENSMEUG00000004499	-	70	92.598	Notamacropus_eugenii
ENSMUSG00000022565	Plec	91	91.958	ENSOPRG00000015206	PLEC	69	90.895	Ochotona_princeps
ENSMUSG00000022565	Plec	100	95.643	ENSODEG00000014671	PLEC	100	95.643	Octodon_degus
ENSMUSG00000022565	Plec	85	92.515	ENSOCUG00000023075	-	100	93.086	Oryctolagus_cuniculus
ENSMUSG00000022565	Plec	100	77.618	ENSOARG00000015846	-	100	73.962	Ovis_aries
ENSMUSG00000022565	Plec	100	92.141	ENSPPAG00000042112	PLEC	100	88.955	Pan_paniscus
ENSMUSG00000022565	Plec	100	93.689	ENSPTRG00000020672	PLEC	100	93.689	Pan_troglodytes
ENSMUSG00000022565	Plec	100	93.603	ENSPANG00000023403	-	100	93.603	Papio_anubis
ENSMUSG00000022565	Plec	100	97.624	ENSPEMG00000011922	Plec	100	97.615	Peromyscus_maniculatus_bairdii
ENSMUSG00000022565	Plec	100	87.565	ENSPCIG00000014981	PLEC	100	83.022	Phascolarctos_cinereus
ENSMUSG00000022565	Plec	100	93.710	ENSPCOG00000023279	PLEC	100	93.710	Propithecus_coquereli
ENSMUSG00000022565	Plec	100	92.334	ENSPVAG00000009376	PLEC	91	92.555	Pteropus_vampyrus
ENSMUSG00000022565	Plec	100	98.315	ENSRNOG00000023781	Plec	100	98.315	Rattus_norvegicus
ENSMUSG00000022565	Plec	100	92.531	ENSRBIG00000041068	PLEC	61	84.065	Rhinopithecus_bieti
ENSMUSG00000022565	Plec	100	93.734	ENSRROG00000015881	PLEC	100	93.734	Rhinopithecus_roxellana
ENSMUSG00000022565	Plec	100	90.796	ENSSBOG00000025259	PLEC	100	90.789	Saimiri_boliviensis_boliviensis
ENSMUSG00000022565	Plec	100	85.492	ENSSHAG00000009020	PLEC	99	80.309	Sarcophilus_harrisii
ENSMUSG00000022565	Plec	100	86.411	ENSTTRG00000010427	PLEC	95	90.208	Tursiops_truncatus
ENSMUSG00000022565	Plec	100	92.093	ENSVVUG00000010214	PLEC	100	92.093	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003779	actin binding	-	IEA	Function
GO:0005198	structural molecule activity	21873635.	IBA	Function
GO:0005200	structural constituent of cytoskeleton	21873635.	IBA	Function
GO:0005200	structural constituent of cytoskeleton	-	ISO	Function
GO:0005515	protein binding	18827015.19932097.25703379.29128334.	IPI	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005882	intermediate filament	21873635.	IBA	Component
GO:0005903	brush border	22114352.	IDA	Component
GO:0005925	focal adhesion	21873635.	IBA	Component
GO:0005925	focal adhesion	-	ISO	Component
GO:0007010	cytoskeleton organization	-	IEA	Process
GO:0007584	response to nutrient	-	ISO	Process
GO:0008092	cytoskeletal protein binding	-	ISO	Function
GO:0008307	structural constituent of muscle	21873635.	IBA	Function
GO:0008307	structural constituent of muscle	-	ISO	Function
GO:0009925	basal plasma membrane	-	ISO	Component
GO:0016020	membrane	21873635.	IBA	Component
GO:0016324	apical plasma membrane	-	ISO	Component
GO:0016528	sarcoplasm	-	ISO	Component
GO:0030054	cell junction	-	IEA	Component
GO:0030056	hemidesmosome	21873635.	IBA	Component
GO:0030056	hemidesmosome	-	ISO	Component
GO:0030506	ankyrin binding	21873635.	IBA	Function
GO:0030506	ankyrin binding	-	ISO	Function
GO:0031581	hemidesmosome assembly	21873635.	IBA	Process
GO:0031581	hemidesmosome assembly	-	ISO	Process
GO:0042060	wound healing	21873635.	IBA	Process
GO:0042383	sarcolemma	21873635.	IBA	Component
GO:0042383	sarcolemma	-	ISO	Component
GO:0043292	contractile fiber	14627610.	IDA	Component
GO:0045104	intermediate filament cytoskeleton organization	21873635.	IBA	Process
GO:0045111	intermediate filament cytoskeleton	-	ISO	Component
GO:0047485	protein N-terminus binding	-	ISO	Function
GO:0048471	perinuclear region of cytoplasm	21873635.	IBA	Component
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component