EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000022680 (Gene tree)
Gene ID: 94184
Gene Symbol: Pdxdc1
Alias: 2210010A19Rik
Full Name: pyridoxal-dependent decarboxylase domain containing 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 69984
Position: chr16: 13833148-13903131
Accession: 1920909
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000137715	-	683	-	-	- (aa)	-	-
ENSMUST00000023361	-	4228	XM_006522790	ENSMUSP00000023361	789 (aa)	XP_011244355	A0A0R4J034
ENSMUST00000115803	-	1255	-	ENSMUSP00000111469	378 (aa)	-	D3YZA7
ENSMUST00000148551	-	472	-	-	- (aa)	-	-
ENSMUST00000152450	-	782	-	-	- (aa)	-	-
ENSMUST00000150435	-	511	-	-	- (aa)	-	-
ENSMUST00000115804	-	2880	-	ENSMUSP00000111471	710 (aa)	-	Q99K01
ENSMUST00000124860	-	623	-	-	- (aa)	-	-
ENSMUST00000115802	-	2466	-	ENSMUSP00000111468	384 (aa)	-	Q99K01
ENSMUST00000127432	-	738	-	-	- (aa)	-	-
ENSMUST00000144913	-	669	-	-	- (aa)	-	-
ENSMUST00000154150	-	3178	-	-	- (aa)	-	-
ENSMUST00000151774	-	754	-	-	- (aa)	-	-
ENSMUST00000139859	-	792	-	-	- (aa)	-	-
ENSMUST00000148848	-	620	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000022680's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000022680's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001667	ameboidal-type cell migration	21873635.	IBA	Process
GO:0003824	catalytic activity	-	IEA	Function
GO:0005783	endoplasmic reticulum	21873635.	IBA	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0006665	sphingolipid metabolic process	21873635.	IBA	Process
GO:0008117	sphinganine-1-phosphate aldolase activity	21873635.	IBA	Function
GO:0016829	lyase activity	-	IEA	Function
GO:0016831	carboxy-lyase activity	-	IEA	Function
GO:0019752	carboxylic acid metabolic process	-	IEA	Process
GO:0030149	sphingolipid catabolic process	21873635.	IBA	Process
GO:0030170	pyridoxal phosphate binding	21873635.	IBA	Function
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component