EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000022685 (Gene tree)
Gene ID: 74108
Gene Symbol: Parn
Alias: 1200003I18Rik|DAN
Full Name: poly(A)-specific ribonuclease (deadenylation nuclease)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 130211 bases
Position: chr16:13537960-13668170
Accession: 1921358
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000055969	R3H	PF01424.22	6.7e-07	1	1
ENSMUSP00000055969	RNA_bind	PF08675.11	3.6e-33	1	1
ENSMUSP00000055969	CAF1	PF04857.20	1.2e-86	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000229251	-	521	-	-	- (aa)	-	-
ENSMUST00000229042	-	534	-	ENSMUSP00000155076	82 (aa)	-	A0A2R8VHG7
ENSMUST00000058884	-	2906	XM_006522652	ENSMUSP00000055969	624 (aa)	XP_006522715	A0A0R4J0P6
ENSMUST00000231003	-	2519	-	ENSMUSP00000155335	209 (aa)	-	A0A2R8VKA3
ENSMUST00000229526	-	2274	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000022685's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000022685's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000022685	Parn	96	32.178	ENSMUSG00000073460	Pnldc1	97	31.077

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000022685	Parn	100	92.683	ENSG00000140694	PARN	100	93.220	Homo_sapiens
ENSMUSG00000022685	Parn	100	76.829	ENSAPOG00000019730	-	100	64.706	Acanthochromis_polyacanthus
ENSMUSG00000022685	Parn	100	95.122	ENSAMEG00000011208	PARN	100	85.759	Ailuropoda_melanoleuca
ENSMUSG00000022685	Parn	100	76.829	ENSACIG00000000619	parn	85	71.123	Amphilophus_citrinellus
ENSMUSG00000022685	Parn	100	76.829	ENSAOCG00000003465	parn	81	72.759	Amphiprion_ocellaris
ENSMUSG00000022685	Parn	78	73.737	ENSAPEG00000010661	parn	95	73.737	Amphiprion_percula
ENSMUSG00000022685	Parn	100	75.610	ENSATEG00000004661	parn	82	73.601	Anabas_testudineus
ENSMUSG00000022685	Parn	99	79.463	ENSAPLG00000013914	PARN	99	79.463	Anas_platyrhynchos
ENSMUSG00000022685	Parn	100	84.146	ENSACAG00000004973	PARN	100	75.382	Anolis_carolinensis
ENSMUSG00000022685	Parn	100	92.683	ENSANAG00000031516	PARN	100	93.220	Aotus_nancymaae
ENSMUSG00000022685	Parn	100	75.610	ENSACLG00000004742	parn	84	72.318	Astatotilapia_calliptera
ENSMUSG00000022685	Parn	100	75.610	ENSAMXG00000012390	parn	87	74.200	Astyanax_mexicanus
ENSMUSG00000022685	Parn	100	93.902	ENSBTAG00000018097	PARN	100	85.095	Bos_taurus
ENSMUSG00000022685	Parn	100	92.683	ENSCJAG00000015866	PARN	100	93.220	Callithrix_jacchus
ENSMUSG00000022685	Parn	100	91.463	ENSCAFG00000018795	PARN	100	84.796	Canis_familiaris
ENSMUSG00000022685	Parn	100	92.683	ENSCAFG00020024126	PARN	100	85.110	Canis_lupus_dingo
ENSMUSG00000022685	Parn	100	93.902	ENSCHIG00000018143	PARN	100	85.893	Capra_hircus
ENSMUSG00000022685	Parn	91	70.130	ENSCAPG00000007984	PARN	78	60.083	Cavia_aperea
ENSMUSG00000022685	Parn	100	91.463	ENSCPOG00000002263	PARN	100	83.856	Cavia_porcellus
ENSMUSG00000022685	Parn	100	91.463	ENSCCAG00000030367	PARN	100	93.220	Cebus_capucinus
ENSMUSG00000022685	Parn	100	92.683	ENSCATG00000041368	PARN	100	93.220	Cercocebus_atys
ENSMUSG00000022685	Parn	100	90.244	ENSCLAG00000015406	PARN	99	84.013	Chinchilla_lanigera
ENSMUSG00000022685	Parn	100	92.683	ENSCSAG00000008142	PARN	100	86.698	Chlorocebus_sabaeus
ENSMUSG00000022685	Parn	91	93.333	ENSCHOG00000007014	PARN	100	68.938	Choloepus_hoffmanni
ENSMUSG00000022685	Parn	85	81.618	ENSCPBG00000006609	PARN	94	81.923	Chrysemys_picta_bellii
ENSMUSG00000022685	Parn	100	45.122	ENSCING00000010142	-	99	43.902	Ciona_intestinalis
ENSMUSG00000022685	Parn	100	92.683	ENSCANG00000028849	-	100	93.220	Colobus_angolensis_palliatus
ENSMUSG00000022685	Parn	99	92.593	ENSCANG00000023734	-	100	75.909	Colobus_angolensis_palliatus
ENSMUSG00000022685	Parn	100	97.561	ENSCGRG00001012096	Parn	100	92.640	Cricetulus_griseus_chok1gshd
ENSMUSG00000022685	Parn	100	97.561	ENSCGRG00000004939	Parn	100	92.640	Cricetulus_griseus_crigri
ENSMUSG00000022685	Parn	100	75.610	ENSCSEG00000002064	parn	100	59.276	Cynoglossus_semilaevis
ENSMUSG00000022685	Parn	100	74.390	ENSCVAG00000014848	parn	82	72.711	Cyprinodon_variegatus
ENSMUSG00000022685	Parn	99	66.667	ENSDARG00000102634	parn	100	60.185	Danio_rerio
ENSMUSG00000022685	Parn	100	92.683	ENSDNOG00000000833	PARN	98	88.309	Dasypus_novemcinctus
ENSMUSG00000022685	Parn	100	93.902	ENSDORG00000027812	-	100	80.000	Dipodomys_ordii
ENSMUSG00000022685	Parn	100	89.286	ENSETEG00000014828	-	69	84.411	Echinops_telfairi
ENSMUSG00000022685	Parn	100	95.122	ENSEASG00005011400	PARN	100	86.207	Equus_asinus_asinus
ENSMUSG00000022685	Parn	100	93.902	ENSECAG00000017792	PARN	100	86.364	Equus_caballus
ENSMUSG00000022685	Parn	100	88.095	ENSEEUG00000010370	PARN	86	75.113	Erinaceus_europaeus
ENSMUSG00000022685	Parn	100	74.390	ENSELUG00000013139	parn	75	71.280	Esox_lucius
ENSMUSG00000022685	Parn	100	92.683	ENSFCAG00000044961	PARN	100	93.220	Felis_catus
ENSMUSG00000022685	Parn	99	78.922	ENSFALG00000003911	PARN	98	78.922	Ficedula_albicollis
ENSMUSG00000022685	Parn	100	91.463	ENSFDAG00000009234	PARN	100	84.483	Fukomys_damarensis
ENSMUSG00000022685	Parn	100	74.390	ENSFHEG00000013738	parn	92	72.881	Fundulus_heteroclitus
ENSMUSG00000022685	Parn	100	75.610	ENSGMOG00000003231	parn	99	73.665	Gadus_morhua
ENSMUSG00000022685	Parn	100	86.585	ENSGALG00000003091	PARN	100	78.527	Gallus_gallus
ENSMUSG00000022685	Parn	100	74.390	ENSGAFG00000011061	parn	83	71.527	Gambusia_affinis
ENSMUSG00000022685	Parn	100	73.171	ENSGACG00000019501	parn	100	67.347	Gasterosteus_aculeatus
ENSMUSG00000022685	Parn	51	76.994	ENSGAGG00000023281	PARN	83	76.994	Gopherus_agassizii
ENSMUSG00000022685	Parn	100	92.683	ENSGGOG00000025224	PARN	100	93.220	Gorilla_gorilla
ENSMUSG00000022685	Parn	100	75.610	ENSHBUG00000017906	parn	90	74.115	Haplochromis_burtoni
ENSMUSG00000022685	Parn	100	91.463	ENSHGLG00000010886	PARN	100	84.953	Heterocephalus_glaber_female
ENSMUSG00000022685	Parn	100	91.463	ENSHGLG00100014659	PARN	100	84.953	Heterocephalus_glaber_male
ENSMUSG00000022685	Parn	91	80.000	ENSHCOG00000008683	parn	91	71.834	Hippocampus_comes
ENSMUSG00000022685	Parn	100	67.073	ENSIPUG00000012401	parn	84	61.471	Ictalurus_punctatus
ENSMUSG00000022685	Parn	100	92.683	ENSSTOG00000007519	PARN	100	85.893	Ictidomys_tridecemlineatus
ENSMUSG00000022685	Parn	100	95.122	ENSJJAG00000023049	Parn	100	86.688	Jaculus_jaculus
ENSMUSG00000022685	Parn	100	74.390	ENSKMAG00000009462	parn	83	71.848	Kryptolebias_marmoratus
ENSMUSG00000022685	Parn	100	75.610	ENSLBEG00000009167	parn	89	71.404	Labrus_bergylta
ENSMUSG00000022685	Parn	96	66.029	ENSLACG00000004207	PARN	100	75.472	Latimeria_chalumnae
ENSMUSG00000022685	Parn	100	79.268	ENSLOCG00000000715	parn	85	74.182	Lepisosteus_oculatus
ENSMUSG00000022685	Parn	100	93.902	ENSLAFG00000015036	PARN	100	85.895	Loxodonta_africana
ENSMUSG00000022685	Parn	86	34.615	ENSLAFG00000030189	PNLDC1	89	31.077	Loxodonta_africana
ENSMUSG00000022685	Parn	100	92.683	ENSMFAG00000044852	PARN	100	93.220	Macaca_fascicularis
ENSMUSG00000022685	Parn	100	92.683	ENSMMUG00000018849	PARN	100	93.220	Macaca_mulatta
ENSMUSG00000022685	Parn	100	92.683	ENSMNEG00000045108	PARN	100	93.220	Macaca_nemestrina
ENSMUSG00000022685	Parn	90	33.784	ENSMNEG00000034271	PNLDC1	74	30.126	Macaca_nemestrina
ENSMUSG00000022685	Parn	100	92.683	ENSMLEG00000031743	PARN	100	93.220	Mandrillus_leucophaeus
ENSMUSG00000022685	Parn	100	75.610	ENSMAMG00000006939	parn	82	72.759	Mastacembelus_armatus
ENSMUSG00000022685	Parn	100	75.610	ENSMZEG00005013590	parn	95	71.103	Maylandia_zebra
ENSMUSG00000022685	Parn	95	78.618	ENSMGAG00000001004	PARN	95	78.618	Meleagris_gallopavo
ENSMUSG00000022685	Parn	100	86.888	ENSMAUG00000008025	Parn	100	86.888	Mesocricetus_auratus
ENSMUSG00000022685	Parn	90	32.895	ENSMAUG00000012298	Pnldc1	68	34.932	Mesocricetus_auratus
ENSMUSG00000022685	Parn	100	93.902	ENSMICG00000016053	PARN	100	94.915	Microcebus_murinus
ENSMUSG00000022685	Parn	100	98.780	ENSMOCG00000022211	Parn	100	95.277	Microtus_ochrogaster
ENSMUSG00000022685	Parn	100	78.049	ENSMMOG00000011333	parn	100	65.306	Mola_mola
ENSMUSG00000022685	Parn	100	88.095	ENSMODG00000004915	PARN	99	88.508	Monodelphis_domestica
ENSMUSG00000022685	Parn	100	75.904	ENSMALG00000019426	parn	91	75.978	Monopterus_albus
ENSMUSG00000022685	Parn	100	98.878	MGP_CAROLIEiJ_G0020466	Parn	100	98.878	Mus_caroli
ENSMUSG00000022685	Parn	100	96.635	MGP_PahariEiJ_G0016172	Parn	100	96.635	Mus_pahari
ENSMUSG00000022685	Parn	100	99.038	MGP_SPRETEiJ_G0021361	Parn	100	99.038	Mus_spretus
ENSMUSG00000022685	Parn	100	95.122	ENSMPUG00000014464	PARN	100	85.893	Mustela_putorius_furo
ENSMUSG00000022685	Parn	100	90.244	ENSMLUG00000005414	PARN	100	88.664	Myotis_lucifugus
ENSMUSG00000022685	Parn	100	96.341	ENSNGAG00000024082	-	100	83.182	Nannospalax_galili
ENSMUSG00000022685	Parn	100	75.610	ENSNBRG00000006805	parn	90	73.970	Neolamprologus_brichardi
ENSMUSG00000022685	Parn	100	92.683	ENSNLEG00000010241	PARN	100	93.220	Nomascus_leucogenys
ENSMUSG00000022685	Parn	90	87.838	ENSMEUG00000008178	-	91	68.333	Notamacropus_eugenii
ENSMUSG00000022685	Parn	91	94.667	ENSOPRG00000012187	PARN	100	81.141	Ochotona_princeps
ENSMUSG00000022685	Parn	100	91.463	ENSODEG00000001617	PARN	100	78.233	Octodon_degus
ENSMUSG00000022685	Parn	100	75.610	ENSONIG00000000151	parn	100	66.924	Oreochromis_niloticus
ENSMUSG00000022685	Parn	60	79.221	ENSOANG00000020155	-	97	80.263	Ornithorhynchus_anatinus
ENSMUSG00000022685	Parn	67	77.397	ENSOANG00000029996	-	93	77.500	Ornithorhynchus_anatinus
ENSMUSG00000022685	Parn	96	89.873	ENSOCUG00000000322	PARN	100	84.882	Oryctolagus_cuniculus
ENSMUSG00000022685	Parn	100	76.829	ENSORLG00000024893	-	100	63.636	Oryzias_latipes
ENSMUSG00000022685	Parn	100	76.829	ENSORLG00020010313	parn	88	68.977	Oryzias_latipes_hni
ENSMUSG00000022685	Parn	100	76.829	ENSORLG00015000300	parn	85	70.912	Oryzias_latipes_hsok
ENSMUSG00000022685	Parn	100	76.829	ENSOMEG00000019555	parn	97	63.182	Oryzias_melastigma
ENSMUSG00000022685	Parn	100	90.476	ENSOGAG00000014626	PARN	100	88.798	Otolemur_garnettii
ENSMUSG00000022685	Parn	100	93.902	ENSOARG00000007574	PARN	100	91.093	Ovis_aries
ENSMUSG00000022685	Parn	100	92.683	ENSPPAG00000031438	PARN	100	93.220	Pan_paniscus
ENSMUSG00000022685	Parn	100	92.683	ENSPPRG00000018583	PARN	100	93.220	Panthera_pardus
ENSMUSG00000022685	Parn	100	92.683	ENSPTIG00000012135	PARN	100	93.220	Panthera_tigris_altaica
ENSMUSG00000022685	Parn	100	91.463	ENSPTRG00000007792	PARN	100	93.220	Pan_troglodytes
ENSMUSG00000022685	Parn	100	92.683	ENSPANG00000020099	PARN	100	93.220	Papio_anubis
ENSMUSG00000022685	Parn	100	75.610	ENSPKIG00000022807	parn	91	67.802	Paramormyrops_kingsleyae
ENSMUSG00000022685	Parn	82	34.286	ENSPSIG00000011419	PNLDC1	85	32.270	Pelodiscus_sinensis
ENSMUSG00000022685	Parn	100	84.146	ENSPSIG00000014804	PARN	100	78.756	Pelodiscus_sinensis
ENSMUSG00000022685	Parn	100	74.390	ENSPMGG00000014431	parn	71	75.195	Periophthalmus_magnuspinnatus
ENSMUSG00000022685	Parn	100	96.341	ENSPEMG00000018439	Parn	100	90.224	Peromyscus_maniculatus_bairdii
ENSMUSG00000022685	Parn	100	59.756	ENSPMAG00000003956	parn	98	65.243	Petromyzon_marinus
ENSMUSG00000022685	Parn	100	90.244	ENSPCIG00000001259	PARN	91	89.831	Phascolarctos_cinereus
ENSMUSG00000022685	Parn	100	74.390	ENSPFOG00000012823	parn	83	72.117	Poecilia_formosa
ENSMUSG00000022685	Parn	100	74.390	ENSPLAG00000006395	parn	83	72.289	Poecilia_latipinna
ENSMUSG00000022685	Parn	100	74.390	ENSPMEG00000007711	parn	83	72.289	Poecilia_mexicana
ENSMUSG00000022685	Parn	100	74.390	ENSPREG00000000147	parn	83	71.945	Poecilia_reticulata
ENSMUSG00000022685	Parn	100	89.286	ENSPPYG00000007123	PARN	100	85.959	Pongo_abelii
ENSMUSG00000022685	Parn	95	74.711	ENSPCAG00000001741	PARN	100	74.711	Procavia_capensis
ENSMUSG00000022685	Parn	100	92.683	ENSPCOG00000019292	PARN	100	94.915	Propithecus_coquereli
ENSMUSG00000022685	Parn	91	93.333	ENSPVAG00000002547	PARN	100	81.775	Pteropus_vampyrus
ENSMUSG00000022685	Parn	100	75.610	ENSPNYG00000006835	parn	95	68.007	Pundamilia_nyererei
ENSMUSG00000022685	Parn	82	72.973	ENSPNAG00000018905	parn	84	72.973	Pygocentrus_nattereri
ENSMUSG00000022685	Parn	96	32.178	ENSRNOG00000023140	Pnldc1	89	31.077	Rattus_norvegicus
ENSMUSG00000022685	Parn	100	95.122	ENSRNOG00000002912	Parn	100	97.030	Rattus_norvegicus
ENSMUSG00000022685	Parn	52	84.384	ENSRBIG00000018726	PARN	100	84.384	Rhinopithecus_bieti
ENSMUSG00000022685	Parn	52	84.384	ENSRROG00000011162	-	100	84.384	Rhinopithecus_roxellana
ENSMUSG00000022685	Parn	74	91.803	ENSRROG00000020116	-	86	91.803	Rhinopithecus_roxellana
ENSMUSG00000022685	Parn	100	92.683	ENSSBOG00000034726	PARN	100	93.220	Saimiri_boliviensis_boliviensis
ENSMUSG00000022685	Parn	94	88.312	ENSSHAG00000008493	PARN	94	86.842	Sarcophilus_harrisii
ENSMUSG00000022685	Parn	100	75.610	ENSSFOG00015014165	parn	94	72.125	Scleropages_formosus
ENSMUSG00000022685	Parn	100	70.732	ENSSMAG00000000685	parn	100	60.748	Scophthalmus_maximus
ENSMUSG00000022685	Parn	100	74.390	ENSSDUG00000014555	parn	82	72.105	Seriola_dumerili
ENSMUSG00000022685	Parn	99	74.074	ENSSLDG00000007603	-	100	59.091	Seriola_lalandi_dorsalis
ENSMUSG00000022685	Parn	81	89.401	ENSSARG00000014339	PARN	89	89.401	Sorex_araneus
ENSMUSG00000022685	Parn	100	84.146	ENSSPUG00000007719	PARN	100	79.624	Sphenodon_punctatus
ENSMUSG00000022685	Parn	100	76.829	ENSSPAG00000007095	parn	92	69.381	Stegastes_partitus
ENSMUSG00000022685	Parn	100	95.122	ENSSSCG00000007878	PARN	89	85.423	Sus_scrofa
ENSMUSG00000022685	Parn	99	78.673	ENSTGUG00000004971	PARN	99	78.673	Taeniopygia_guttata
ENSMUSG00000022685	Parn	66	36.957	ENSTGUG00000011418	PNLDC1	69	30.791	Taeniopygia_guttata
ENSMUSG00000022685	Parn	85	80.000	ENSTRUG00000015208	-	99	75.758	Takifugu_rubripes
ENSMUSG00000022685	Parn	100	76.829	ENSTNIG00000008252	parn	100	68.075	Tetraodon_nigroviridis
ENSMUSG00000022685	Parn	91	73.748	ENSTBEG00000010407	PARN	100	73.748	Tupaia_belangeri
ENSMUSG00000022685	Parn	91	93.333	ENSTTRG00000002843	PARN	100	80.666	Tursiops_truncatus
ENSMUSG00000022685	Parn	67	83.562	ENSUAMG00000008283	PARN	90	77.982	Ursus_americanus
ENSMUSG00000022685	Parn	100	95.122	ENSUMAG00000004527	PARN	100	86.050	Ursus_maritimus
ENSMUSG00000022685	Parn	91	93.333	ENSVPAG00000008968	PARN	99	82.843	Vicugna_pacos
ENSMUSG00000022685	Parn	100	92.683	ENSVVUG00000019509	PARN	100	85.266	Vulpes_vulpes
ENSMUSG00000022685	Parn	100	79.268	ENSXETG00000010994	parn	100	79.278	Xenopus_tropicalis
ENSMUSG00000022685	Parn	100	74.390	ENSXCOG00000015990	parn	96	67.698	Xiphophorus_couchianus
ENSMUSG00000022685	Parn	100	74.390	ENSXMAG00000014783	parn	83	71.306	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	21873635.	IBA	Function
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	IEA	Process
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	18337750.	IDA	Process
GO:0000495	box H/ACA snoRNA 3'-end processing	-	ISO	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0004527	exonuclease activity	-	IEA	Function
GO:0004535	poly(A)-specific ribonuclease activity	21873635.	IBA	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	ISO	Function
GO:0005515	protein binding	18337750.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006402	mRNA catabolic process	-	IEA	Process
GO:0010587	miRNA catabolic process	-	ISO	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0019901	protein kinase binding	-	ISO	Function
GO:0032212	positive regulation of telomere maintenance via telomerase	-	ISO	Process
GO:0043169	cation binding	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0051973	positive regulation of telomerase activity	-	ISO	Process
GO:0071051	polyadenylation-dependent snoRNA 3'-end processing	-	ISO	Process
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	ISO	Process
GO:0090669	telomerase RNA stabilization	-	ISO	Process
GO:0110008	ncRNA deadenylation	-	ISO	Process
GO:1904872	regulation of telomerase RNA localization to Cajal body	-	ISO	Process