EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000022748 (Gene tree)
Gene ID: 66497
Gene Symbol: Cmss1
Alias: 1110001A06Rik|2610528E23Rik|4930572F24Rik
Full Name: cms small ribosomal subunit 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 304865 bases
Position: chr16:57302000-57606864
Accession: 1913747
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000110011	CMS1	PF14617.6	2.9e-31	1	1
ENSMUSP00000110011	DEAD	PF00270.29	1.4e-05	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000231282	-	610	-	-	- (aa)	-	-
ENSMUST00000232413	-	529	-	ENSMUSP00000156058	67 (aa)	-	UPI00001EA956
ENSMUST00000114371	-	1150	XM_006522459	ENSMUSP00000110011	276 (aa)	XP_006522522	Q9CZT6

Gene Model

Click here to download ENSMUSG00000022748's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000022748's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000022748	Cmss1	100	82.500	ENSG00000184220	CMSS1	99	88.889	Homo_sapiens
ENSMUSG00000022748	Cmss1	73	64.356	ENSAPOG00000010604	cmss1	92	59.149	Acanthochromis_polyacanthus
ENSMUSG00000022748	Cmss1	93	81.923	ENSAMEG00000004092	CMSS1	100	81.923	Ailuropoda_melanoleuca
ENSMUSG00000022748	Cmss1	73	53.960	ENSACIG00000021854	cmss1	75	53.960	Amphilophus_citrinellus
ENSMUSG00000022748	Cmss1	100	51.903	ENSAOCG00000013361	cmss1	100	52.941	Amphiprion_ocellaris
ENSMUSG00000022748	Cmss1	100	51.034	ENSAPEG00000005829	cmss1	100	51.505	Amphiprion_percula
ENSMUSG00000022748	Cmss1	100	52.560	ENSATEG00000008209	cmss1	100	54.296	Anabas_testudineus
ENSMUSG00000022748	Cmss1	83	68.696	ENSAPLG00000010542	CMSS1	100	68.696	Anas_platyrhynchos
ENSMUSG00000022748	Cmss1	91	65.891	ENSACAG00000011065	CMSS1	95	65.891	Anolis_carolinensis
ENSMUSG00000022748	Cmss1	100	80.427	ENSANAG00000023565	CMSS1	100	80.427	Aotus_nancymaae
ENSMUSG00000022748	Cmss1	100	50.515	ENSACLG00000027294	cmss1	100	51.877	Astatotilapia_calliptera
ENSMUSG00000022748	Cmss1	100	46.622	ENSAMXG00000002046	cmss1	100	46.622	Astyanax_mexicanus
ENSMUSG00000022748	Cmss1	100	84.286	ENSBTAG00000013663	CMSS1	100	84.286	Bos_taurus
ENSMUSG00000022748	Cmss1	100	81.139	ENSCJAG00000000610	CMSS1	100	81.139	Callithrix_jacchus
ENSMUSG00000022748	Cmss1	93	83.784	ENSCAFG00000009230	CMSS1	93	83.784	Canis_familiaris
ENSMUSG00000022748	Cmss1	83	78.448	ENSCAFG00020024156	-	73	78.448	Canis_lupus_dingo
ENSMUSG00000022748	Cmss1	93	83.462	ENSCAFG00020009464	-	95	83.462	Canis_lupus_dingo
ENSMUSG00000022748	Cmss1	96	80.000	ENSCHIG00000013003	CMSS1	98	79.705	Capra_hircus
ENSMUSG00000022748	Cmss1	96	77.206	ENSTSYG00000009266	CMSS1	99	79.537	Carlito_syrichta
ENSMUSG00000022748	Cmss1	81	68.261	ENSCAPG00000013584	CMSS1	88	73.846	Cavia_aperea
ENSMUSG00000022748	Cmss1	100	81.429	ENSCPOG00000014680	CMSS1	100	81.429	Cavia_porcellus
ENSMUSG00000022748	Cmss1	100	82.206	ENSCCAG00000034685	CMSS1	100	82.206	Cebus_capucinus
ENSMUSG00000022748	Cmss1	100	82.500	ENSCATG00000031980	CMSS1	100	82.500	Cercocebus_atys
ENSMUSG00000022748	Cmss1	83	85.652	ENSCLAG00000011241	CMSS1	98	85.652	Chinchilla_lanigera
ENSMUSG00000022748	Cmss1	88	83.673	ENSCSAG00000006024	CMSS1	99	83.673	Chlorocebus_sabaeus
ENSMUSG00000022748	Cmss1	100	63.441	ENSCHOG00000012098	CMSS1	100	63.441	Choloepus_hoffmanni
ENSMUSG00000022748	Cmss1	82	39.474	ENSCING00000014848	-	100	42.781	Ciona_intestinalis
ENSMUSG00000022748	Cmss1	100	82.857	ENSCANG00000031337	CMSS1	100	82.857	Colobus_angolensis_palliatus
ENSMUSG00000022748	Cmss1	100	87.097	ENSCGRG00001014305	Cmss1	100	88.889	Cricetulus_griseus_chok1gshd
ENSMUSG00000022748	Cmss1	92	89.105	ENSCGRG00000006722	Cmss1	99	89.105	Cricetulus_griseus_crigri
ENSMUSG00000022748	Cmss1	100	50.000	ENSCSEG00000004958	cmss1	100	51.689	Cynoglossus_semilaevis
ENSMUSG00000022748	Cmss1	100	49.320	ENSCVAG00000005039	cmss1	100	52.414	Cyprinodon_variegatus
ENSMUSG00000022748	Cmss1	100	46.284	ENSDARG00000112579	cmss1	100	47.440	Danio_rerio
ENSMUSG00000022748	Cmss1	94	81.154	ENSDNOG00000040418	CMSS1	92	81.712	Dasypus_novemcinctus
ENSMUSG00000022748	Cmss1	100	83.214	ENSDORG00000010461	Cmss1	100	83.214	Dipodomys_ordii
ENSMUSG00000022748	Cmss1	96	75.746	ENSEASG00005010966	CMSS1	98	86.047	Equus_asinus_asinus
ENSMUSG00000022748	Cmss1	95	78.947	ENSECAG00000015662	CMSS1	99	83.260	Equus_caballus
ENSMUSG00000022748	Cmss1	100	53.214	ENSEEUG00000007624	-	100	52.857	Erinaceus_europaeus
ENSMUSG00000022748	Cmss1	100	49.667	ENSELUG00000019459	cmss1	100	50.820	Esox_lucius
ENSMUSG00000022748	Cmss1	100	85.714	ENSFCAG00000044577	CMSS1	100	85.714	Felis_catus
ENSMUSG00000022748	Cmss1	86	65.546	ENSFALG00000005816	CMSS1	97	66.957	Ficedula_albicollis
ENSMUSG00000022748	Cmss1	83	83.843	ENSFDAG00000012577	CMSS1	100	83.843	Fukomys_damarensis
ENSMUSG00000022748	Cmss1	82	59.565	ENSFHEG00000012008	cmss1	95	60.870	Fundulus_heteroclitus
ENSMUSG00000022748	Cmss1	99	52.482	ENSGMOG00000016729	cmss1	100	52.297	Gadus_morhua
ENSMUSG00000022748	Cmss1	93	62.891	ENSGALG00000015267	CMSS1	95	62.891	Gallus_gallus
ENSMUSG00000022748	Cmss1	75	63.592	ENSGAFG00000021217	cmss1	77	63.366	Gambusia_affinis
ENSMUSG00000022748	Cmss1	99	48.944	ENSGACG00000002798	cmss1	100	50.000	Gasterosteus_aculeatus
ENSMUSG00000022748	Cmss1	100	65.217	ENSGAGG00000019861	CMSS1	100	65.217	Gopherus_agassizii
ENSMUSG00000022748	Cmss1	93	82.625	ENSGGOG00000014125	CMSS1	99	82.625	Gorilla_gorilla
ENSMUSG00000022748	Cmss1	100	50.690	ENSHBUG00000008431	cmss1	100	50.690	Haplochromis_burtoni
ENSMUSG00000022748	Cmss1	90	81.855	ENSHGLG00000019481	CMSS1	99	81.855	Heterocephalus_glaber_female
ENSMUSG00000022748	Cmss1	92	81.102	ENSHGLG00100010314	CMSS1	99	81.102	Heterocephalus_glaber_male
ENSMUSG00000022748	Cmss1	100	52.203	ENSHCOG00000003222	cmss1	100	53.559	Hippocampus_comes
ENSMUSG00000022748	Cmss1	100	48.980	ENSIPUG00000011591	cmss1	100	48.966	Ictalurus_punctatus
ENSMUSG00000022748	Cmss1	100	82.857	ENSSTOG00000019366	CMSS1	100	82.857	Ictidomys_tridecemlineatus
ENSMUSG00000022748	Cmss1	100	80.357	ENSJJAG00000014894	Cmss1	100	80.357	Jaculus_jaculus
ENSMUSG00000022748	Cmss1	73	53.465	ENSKMAG00000002390	cmss1	81	53.465	Kryptolebias_marmoratus
ENSMUSG00000022748	Cmss1	73	58.128	ENSLBEG00000006298	cmss1	83	58.128	Labrus_bergylta
ENSMUSG00000022748	Cmss1	83	65.652	ENSLACG00000009293	CMSS1	100	65.652	Latimeria_chalumnae
ENSMUSG00000022748	Cmss1	100	51.237	ENSLOCG00000009391	cmss1	100	51.590	Lepisosteus_oculatus
ENSMUSG00000022748	Cmss1	83	83.843	ENSLAFG00000017509	CMSS1	100	83.843	Loxodonta_africana
ENSMUSG00000022748	Cmss1	100	82.857	ENSMFAG00000045006	CMSS1	100	82.857	Macaca_fascicularis
ENSMUSG00000022748	Cmss1	100	82.500	ENSMMUG00000002939	CMSS1	100	82.500	Macaca_mulatta
ENSMUSG00000022748	Cmss1	100	82.500	ENSMNEG00000031315	CMSS1	100	82.500	Macaca_nemestrina
ENSMUSG00000022748	Cmss1	100	82.500	ENSMLEG00000033660	CMSS1	100	82.500	Mandrillus_leucophaeus
ENSMUSG00000022748	Cmss1	100	52.069	ENSMAMG00000017176	cmss1	100	51.724	Mastacembelus_armatus
ENSMUSG00000022748	Cmss1	100	50.515	ENSMZEG00005021886	cmss1	100	51.877	Maylandia_zebra
ENSMUSG00000022748	Cmss1	83	67.686	ENSMGAG00000014360	CMSS1	100	67.686	Meleagris_gallopavo
ENSMUSG00000022748	Cmss1	100	68.459	ENSMAUG00000020609	Cmss1	100	68.459	Mesocricetus_auratus
ENSMUSG00000022748	Cmss1	100	82.857	ENSMICG00000048977	CMSS1	100	82.857	Microcebus_murinus
ENSMUSG00000022748	Cmss1	100	88.043	ENSMOCG00000021937	Cmss1	100	88.043	Microtus_ochrogaster
ENSMUSG00000022748	Cmss1	73	60.396	ENSMMOG00000019794	cmss1	95	54.894	Mola_mola
ENSMUSG00000022748	Cmss1	94	71.923	ENSMODG00000002275	CMSS1	98	71.923	Monodelphis_domestica
ENSMUSG00000022748	Cmss1	100	52.397	ENSMALG00000004250	cmss1	100	52.740	Monopterus_albus
ENSMUSG00000022748	Cmss1	100	98.551	MGP_CAROLIEiJ_G0020824	Cmss1	100	98.551	Mus_caroli
ENSMUSG00000022748	Cmss1	100	96.377	MGP_PahariEiJ_G0016524	Cmss1	100	96.377	Mus_pahari
ENSMUSG00000022748	Cmss1	100	98.913	MGP_SPRETEiJ_G0021724	Cmss1	100	98.913	Mus_spretus
ENSMUSG00000022748	Cmss1	92	85.659	ENSMPUG00000011324	CMSS1	99	85.000	Mustela_putorius_furo
ENSMUSG00000022748	Cmss1	93	84.291	ENSMLUG00000001131	CMSS1	99	84.291	Myotis_lucifugus
ENSMUSG00000022748	Cmss1	100	84.643	ENSNGAG00000020316	Cmss1	100	84.643	Nannospalax_galili
ENSMUSG00000022748	Cmss1	100	50.515	ENSNBRG00000003095	cmss1	100	51.536	Neolamprologus_brichardi
ENSMUSG00000022748	Cmss1	100	83.571	ENSNLEG00000034172	CMSS1	100	83.571	Nomascus_leucogenys
ENSMUSG00000022748	Cmss1	83	65.502	ENSMEUG00000014505	CMSS1	100	65.502	Notamacropus_eugenii
ENSMUSG00000022748	Cmss1	100	82.437	ENSOPRG00000002986	CMSS1	100	82.437	Ochotona_princeps
ENSMUSG00000022748	Cmss1	100	81.786	ENSODEG00000005226	-	100	81.786	Octodon_degus
ENSMUSG00000022748	Cmss1	100	67.148	ENSODEG00000009446	-	100	67.148	Octodon_degus
ENSMUSG00000022748	Cmss1	100	78.136	ENSODEG00000003558	-	100	78.136	Octodon_degus
ENSMUSG00000022748	Cmss1	100	69.534	ENSODEG00000001853	-	100	69.534	Octodon_degus
ENSMUSG00000022748	Cmss1	73	60.891	ENSONIG00000006678	cmss1	77	60.891	Oreochromis_niloticus
ENSMUSG00000022748	Cmss1	92	72.441	ENSOANG00000007529	CMSS1	100	75.319	Ornithorhynchus_anatinus
ENSMUSG00000022748	Cmss1	96	80.443	ENSOCUG00000025366	CMSS1	98	80.443	Oryctolagus_cuniculus
ENSMUSG00000022748	Cmss1	100	52.632	ENSORLG00000020340	cmss1	100	54.895	Oryzias_latipes
ENSMUSG00000022748	Cmss1	76	54.976	ENSORLG00020012235	cmss1	85	54.950	Oryzias_latipes_hni
ENSMUSG00000022748	Cmss1	73	55.941	ENSORLG00015015551	cmss1	75	55.941	Oryzias_latipes_hsok
ENSMUSG00000022748	Cmss1	100	53.979	ENSOMEG00000012555	cmss1	100	54.671	Oryzias_melastigma
ENSMUSG00000022748	Cmss1	83	84.279	ENSOGAG00000002045	CMSS1	100	84.279	Otolemur_garnettii
ENSMUSG00000022748	Cmss1	96	79.630	ENSOARG00000017899	CMSS1	92	79.630	Ovis_aries
ENSMUSG00000022748	Cmss1	97	79.630	ENSPPAG00000038515	CMSS1	99	79.630	Pan_paniscus
ENSMUSG00000022748	Cmss1	100	85.000	ENSPPRG00000016767	CMSS1	100	85.000	Panthera_pardus
ENSMUSG00000022748	Cmss1	100	84.286	ENSPTIG00000018274	CMSS1	100	84.286	Panthera_tigris_altaica
ENSMUSG00000022748	Cmss1	100	82.143	ENSPTRG00000015157	CMSS1	99	83.265	Pan_troglodytes
ENSMUSG00000022748	Cmss1	93	81.250	ENSPANG00000019980	CMSS1	99	81.250	Papio_anubis
ENSMUSG00000022748	Cmss1	95	56.000	ENSPKIG00000012609	cmss1	97	57.795	Paramormyrops_kingsleyae
ENSMUSG00000022748	Cmss1	83	74.348	ENSPSIG00000003849	CMSS1	100	74.348	Pelodiscus_sinensis
ENSMUSG00000022748	Cmss1	85	56.356	ENSPMGG00000010286	cmss1	99	57.203	Periophthalmus_magnuspinnatus
ENSMUSG00000022748	Cmss1	100	90.036	ENSPEMG00000016384	Cmss1	100	90.036	Peromyscus_maniculatus_bairdii
ENSMUSG00000022748	Cmss1	74	52.941	ENSPMAG00000001146	cmss1	99	53.465	Petromyzon_marinus
ENSMUSG00000022748	Cmss1	89	72.691	ENSPCIG00000015656	CMSS1	94	72.984	Phascolarctos_cinereus
ENSMUSG00000022748	Cmss1	100	51.748	ENSPFOG00000016849	cmss1	100	53.497	Poecilia_formosa
ENSMUSG00000022748	Cmss1	100	51.399	ENSPLAG00000008323	cmss1	100	53.147	Poecilia_latipinna
ENSMUSG00000022748	Cmss1	100	52.381	ENSPMEG00000021020	cmss1	100	53.061	Poecilia_mexicana
ENSMUSG00000022748	Cmss1	82	60.000	ENSPREG00000007618	cmss1	80	58.898	Poecilia_reticulata
ENSMUSG00000022748	Cmss1	100	82.857	ENSPPYG00000013606	CMSS1	100	82.857	Pongo_abelii
ENSMUSG00000022748	Cmss1	100	83.214	ENSPCOG00000020035	CMSS1	100	83.214	Propithecus_coquereli
ENSMUSG00000022748	Cmss1	100	73.929	ENSPVAG00000017031	CMSS1	100	73.929	Pteropus_vampyrus
ENSMUSG00000022748	Cmss1	91	50.943	ENSPNYG00000013428	cmss1	97	52.434	Pundamilia_nyererei
ENSMUSG00000022748	Cmss1	100	48.814	ENSPNAG00000007912	cmss1	100	49.153	Pygocentrus_nattereri
ENSMUSG00000022748	Cmss1	93	94.922	ENSRNOG00000027888	Cmss1	99	94.922	Rattus_norvegicus
ENSMUSG00000022748	Cmss1	100	82.143	ENSRBIG00000037931	CMSS1	100	82.143	Rhinopithecus_bieti
ENSMUSG00000022748	Cmss1	100	82.143	ENSRROG00000042910	CMSS1	100	82.143	Rhinopithecus_roxellana
ENSMUSG00000022748	Cmss1	93	81.538	ENSSBOG00000030980	CMSS1	99	81.538	Saimiri_boliviensis_boliviensis
ENSMUSG00000022748	Cmss1	89	70.751	ENSSHAG00000009321	CMSS1	99	71.937	Sarcophilus_harrisii
ENSMUSG00000022748	Cmss1	100	54.452	ENSSFOG00015001509	cmss1	100	54.795	Scleropages_formosus
ENSMUSG00000022748	Cmss1	100	52.921	ENSSMAG00000001653	cmss1	100	52.921	Scophthalmus_maximus
ENSMUSG00000022748	Cmss1	100	54.483	ENSSDUG00000007719	cmss1	100	55.172	Seriola_dumerili
ENSMUSG00000022748	Cmss1	75	63.592	ENSSLDG00000012300	cmss1	94	53.070	Seriola_lalandi_dorsalis
ENSMUSG00000022748	Cmss1	100	68.683	ENSSARG00000003584	CMSS1	100	68.683	Sorex_araneus
ENSMUSG00000022748	Cmss1	82	68.722	ENSSPUG00000003865	CMSS1	100	68.722	Sphenodon_punctatus
ENSMUSG00000022748	Cmss1	75	64.078	ENSSPAG00000019182	cmss1	82	55.513	Stegastes_partitus
ENSMUSG00000022748	Cmss1	100	84.643	ENSSSCG00000011970	CMSS1	100	84.643	Sus_scrofa
ENSMUSG00000022748	Cmss1	83	66.087	ENSTGUG00000013635	CMSS1	100	66.087	Taeniopygia_guttata
ENSMUSG00000022748	Cmss1	100	50.345	ENSTRUG00000015265	cmss1	100	51.034	Takifugu_rubripes
ENSMUSG00000022748	Cmss1	73	56.436	ENSTNIG00000002880	cmss1	73	56.436	Tetraodon_nigroviridis
ENSMUSG00000022748	Cmss1	100	56.228	ENSTBEG00000016722	CMSS1	100	56.228	Tupaia_belangeri
ENSMUSG00000022748	Cmss1	100	80.714	ENSTTRG00000001562	CMSS1	100	80.714	Tursiops_truncatus
ENSMUSG00000022748	Cmss1	97	81.022	ENSUAMG00000024209	CMSS1	100	86.607	Ursus_americanus
ENSMUSG00000022748	Cmss1	93	83.077	ENSUMAG00000001983	CMSS1	99	83.268	Ursus_maritimus
ENSMUSG00000022748	Cmss1	100	63.571	ENSVPAG00000000263	CMSS1	100	63.571	Vicugna_pacos
ENSMUSG00000022748	Cmss1	82	83.628	ENSVVUG00000007776	-	89	83.628	Vulpes_vulpes
ENSMUSG00000022748	Cmss1	88	83.806	ENSVVUG00000021647	-	100	83.806	Vulpes_vulpes
ENSMUSG00000022748	Cmss1	100	55.714	ENSXETG00000011858	cmss1	100	55.714	Xenopus_tropicalis
ENSMUSG00000022748	Cmss1	75	63.107	ENSXCOG00000018724	cmss1	69	62.871	Xiphophorus_couchianus
ENSMUSG00000022748	Cmss1	75	63.107	ENSXMAG00000011243	cmss1	76	62.871	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0008150	biological_process	-	ND	Process