EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000231812	-	456	-	ENSMUSP00000156369	69 (aa)	-	UPI000198D0D5
ENSMUST00000232153	-	387	-	-	- (aa)	-	-
ENSMUST00000231278	-	3511	-	-	- (aa)	-	-
ENSMUST00000232380	-	787	-	-	- (aa)	-	-
ENSMUST00000232117	-	2908	-	ENSMUSP00000156322	527 (aa)	-	UPI000198D0CD
ENSMUST00000231432	-	1810	-	-	- (aa)	-	-
ENSMUST00000231576	-	599	-	-	- (aa)	-	-
ENSMUST00000232017	-	959	-	ENSMUSP00000155905	233 (aa)	-	UPI0003F4864D
ENSMUST00000232531	-	3508	-	-	- (aa)	-	-
ENSMUST00000231402	-	359	-	-	- (aa)	-	-
ENSMUST00000232581	-	2950	XM_006521991	ENSMUSP00000156132	862 (aa)	XP_006522054	Q3UJF5
ENSMUST00000232547	-	519	-	ENSMUSP00000156017	33 (aa)	-	UPI0003F485CE
ENSMUST00000232523	-	1972	-	-	- (aa)	-	-
ENSMUST00000232200	-	460	-	ENSMUSP00000155870	55 (aa)	-	UPI00016115A4
ENSMUST00000023465	-	3073	XM_006521995	ENSMUSP00000023465	862 (aa)	XP_006522058	Q9Z321
ENSMUST00000231834	-	947	-	-	- (aa)	-	-
ENSMUST00000232656	-	720	-	-	- (aa)	-	-
ENSMUST00000232080	-	1076	-	ENSMUSP00000155903	289 (aa)	-	UPI000198D0D3
ENSMUST00000231966	-	461	-	ENSMUSP00000156239	154 (aa)	-	UPI000198D0D4
ENSMUST00000232231	-	823	-	ENSMUSP00000155935	118 (aa)	-	UPI00016115AB

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu03440	Homologous recombination	KEGG
mmu03460	Fanconi anemia pathway	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000022779	Top3b	100	69.231	FBgn0026015	Top3beta	100	56.576	Drosophila_melanogaster
ENSMUSG00000022779	Top3b	100	95.763	ENSG00000100038	TOP3B	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000793	condensed chromosome	12591952.	IDA	Component
GO:0003677	DNA binding	-	IEA	Function
GO:0003916	DNA topoisomerase activity	21873635.	IBA	Function
GO:0003917	DNA topoisomerase type I activity	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006265	DNA topological change	21873635.	IBA	Process
GO:0007059	chromosome segregation	12591952.	IMP	Process
GO:0016853	isomerase activity	-	IEA	Function