EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000022797 (Gene tree)
Gene ID: 22042
Gene Symbol: Tfrc
Alias: 2610028K12Rik|CD71|E430033M20Rik|Mtvr-1|Mtvr1|TfR1|Trfr|p90
Full Name: transferrin receptor
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 23875
Position: chr16: 32608920-32632794
Accession: 98822
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000137901	-	571	-	-	- (aa)	-	-
ENSMUST00000231912	-	714	-	-	- (aa)	-	-
ENSMUST00000124243	-	166	-	ENSMUSP00000123423	12 (aa)	-	D3YZB9
ENSMUST00000128285	-	3527	-	-	- (aa)	-	-
ENSMUST00000155929	-	808	-	-	- (aa)	-	-
ENSMUST00000120680	-	1860	-	ENSMUSP00000113028	515 (aa)	-	Q8C872
ENSMUST00000023486	-	4890	XM_006521999	ENSMUSP00000023486	763 (aa)	XP_006522062	Q62351

Gene Model

Click here to download ENSMUSG00000022797's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04066	HIF-1 signaling pathway	KEGG
mmu04144	Endocytosis	KEGG
mmu04145	Phagosome	KEGG
mmu04216	Ferroptosis	KEGG
mmu04640	Hematopoietic cell lineage	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000022797's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000022797	Tfrc	100	76.832	ENSG00000072274	TFRC	99	82.500	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003725	double-stranded RNA binding	21266579.	ISO	Function
GO:0004998	transferrin receptor activity	-	ISO	Function
GO:0004998	transferrin receptor activity	10192390.	TAS	Function
GO:0005381	iron ion transmembrane transporter activity	10192390.	TAS	Function
GO:0005515	protein binding	16893896.23416069.	IPI	Function
GO:0005576	extracellular region	-	ISO	Component
GO:0005615	extracellular space	-	ISO	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005768	endosome	11092755.14562105.14668490.14718562.16227996.18321981.23303939.	IDA	Component
GO:0005768	endosome	14612438.	ISO	Component
GO:0005769	early endosome	26432893.	IDA	Component
GO:0005886	plasma membrane	10444069.14562105.16227996.21700773.23303939.	IDA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005887	integral component of plasma membrane	-	ISO	Component
GO:0005905	clathrin-coated pit	18434600.	IDA	Component
GO:0005905	clathrin-coated pit	-	ISO	Component
GO:0006826	iron ion transport	-	ISO	Process
GO:0006879	cellular iron ion homeostasis	10192390.	IMP	Process
GO:0006897	endocytosis	-	IEA	Process
GO:0006898	receptor-mediated endocytosis	-	IEA	Process
GO:0009897	external side of plasma membrane	20424607.20711497.	IDA	Component
GO:0009897	external side of plasma membrane	-	ISO	Component
GO:0009986	cell surface	17716972.23416069.	IDA	Component
GO:0009986	cell surface	19387073.	ISO	Component
GO:0010008	endosome membrane	-	ISO	Component
GO:0016020	membrane	20080761.	IMP	Component
GO:0016020	membrane	-	ISO	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016323	basolateral plasma membrane	-	ISO	Component
GO:0030316	osteoclast differentiation	19252502.	IMP	Process
GO:0030544	Hsp70 protein binding	-	ISO	Function
GO:0030890	positive regulation of B cell proliferation	26642240.	IDA	Process
GO:0030890	positive regulation of B cell proliferation	-	ISO	Process
GO:0031410	cytoplasmic vesicle	15229288.	ISO	Component
GO:0031623	receptor internalization	-	ISO	Process
GO:0031668	cellular response to extracellular stimulus	25860887.	TAS	Process
GO:0033570	transferrin transmembrane transporter activity	-	IEA	Function
GO:0033572	transferrin transport	-	ISO	Process
GO:0035690	cellular response to drug	16254249.	ISO	Process
GO:0042102	positive regulation of T cell proliferation	26642240.	IDA	Process
GO:0042102	positive regulation of T cell proliferation	-	ISO	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0045780	positive regulation of bone resorption	19252502.	IDA	Process
GO:0045830	positive regulation of isotype switching	-	ISO	Process
GO:0048471	perinuclear region of cytoplasm	10444069.	IDA	Component
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0051087	chaperone binding	-	ISO	Function
GO:0055037	recycling endosome	23395379.26432893.	IDA	Component
GO:0055037	recycling endosome	23269685.	ISO	Component
GO:0055038	recycling endosome membrane	-	ISO	Component
GO:0070062	extracellular exosome	19724054.	IDA	Component
GO:0070062	extracellular exosome	-	ISO	Component
GO:0071281	cellular response to iron ion	25860887.	TAS	Process
GO:1990712	HFE-transferrin receptor complex	16893896.	IDA	Component
GO:1990712	HFE-transferrin receptor complex	-	ISO	Component
GO:1990830	cellular response to leukemia inhibitory factor	20439489.	IEP	Process