EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000022961 (Gene tree)
Gene ID: 20658
Gene Symbol: Son
Alias: 2900011L12Rik
Full Name: Son DNA binding protein
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 31716 bases
Position: chr16:91647506-91679221
Accession: 98353
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000112453	dsrm	PF00035.26	8.4e-10	1	1
ENSMUSP00000112453	DND1_DSRM	PF14709.7	1.5e-11	1	1
ENSMUSP00000113615	DND1_DSRM	PF14709.7	3.4e-08	1	1
ENSMUSP00000109671	DND1_DSRM	PF14709.7	2.7e-07	1	1
ENSMUSP00000113615	G-patch	PF01585.23	5.8e-16	1	1
ENSMUSP00000112453	G-patch	PF01585.23	3.3e-15	1	1
ENSMUSP00000109671	G-patch	PF01585.23	3.6e-15	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000122302	-	2449	-	ENSMUSP00000113615	454 (aa)	-	H9KV02
ENSMUST00000232108	-	3808	-	-	- (aa)	-	-
ENSMUST00000140312	-	8426	-	ENSMUSP00000122320	2343 (aa)	-	H9KV15
ENSMUST00000145235	-	598	-	-	- (aa)	-	-
ENSMUST00000117633	-	8731	XM_006522969	ENSMUSP00000112453	2477 (aa)	XP_006523032	H9KV00
ENSMUST00000147461	-	700	-	-	- (aa)	-	-
ENSMUST00000147891	-	5547	-	ENSMUSP00000122544	478 (aa)	-	F7CU80
ENSMUST00000146079	-	799	-	-	- (aa)	-	-
ENSMUST00000129167	-	657	-	-	- (aa)	-	-
ENSMUST00000119368	-	7529	XM_006522973	ENSMUSP00000113129	2321 (aa)	XP_006523036	H9KV01
ENSMUST00000151503	-	647	-	-	- (aa)	-	-
ENSMUST00000114036	-	7945	-	ENSMUSP00000109670	2126 (aa)	-	Q9QX47
ENSMUST00000114037	-	8399	-	ENSMUSP00000109671	2444 (aa)	-	Q9QX47
ENSMUST00000133589	-	736	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000022961's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000022961's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000022961	Son	100	98.391	ENSG00000159140	SON	100	98.391	Homo_sapiens
ENSMUSG00000022961	Son	69	51.220	ENSACIG00000017870	-	94	64.356	Amphilophus_citrinellus
ENSMUSG00000022961	Son	72	52.355	ENSATEG00000012732	-	58	53.985	Anabas_testudineus
ENSMUSG00000022961	Son	93	74.057	ENSAPLG00000008908	-	99	76.341	Anas_platyrhynchos
ENSMUSG00000022961	Son	99	72.848	ENSACAG00000004681	-	99	76.550	Anolis_carolinensis
ENSMUSG00000022961	Son	100	99.464	ENSANAG00000035426	SON	100	99.464	Aotus_nancymaae
ENSMUSG00000022961	Son	78	49.304	ENSACLG00000007098	-	88	51.497	Astatotilapia_calliptera
ENSMUSG00000022961	Son	100	98.238	ENSCJAG00000046975	SON	100	99.732	Callithrix_jacchus
ENSMUSG00000022961	Son	100	98.238	ENSCAFG00020025305	SON	100	99.464	Canis_lupus_dingo
ENSMUSG00000022961	Son	100	98.928	ENSTSYG00000008371	SON	100	98.928	Carlito_syrichta
ENSMUSG00000022961	Son	85	94.286	ENSCAPG00000017011	SON	83	93.496	Cavia_aperea
ENSMUSG00000022961	Son	100	98.899	ENSCPOG00000024278	SON	100	99.464	Cavia_porcellus
ENSMUSG00000022961	Son	100	99.464	ENSCCAG00000030234	SON	100	99.464	Cebus_capucinus
ENSMUSG00000022961	Son	100	99.464	ENSCATG00000029812	SON	100	99.464	Cercocebus_atys
ENSMUSG00000022961	Son	100	99.119	ENSCLAG00000011776	SON	100	99.464	Chinchilla_lanigera
ENSMUSG00000022961	Son	81	41.600	ENSCING00000007049	-	86	43.784	Ciona_intestinalis
ENSMUSG00000022961	Son	100	99.464	ENSCANG00000025986	SON	100	99.464	Colobus_angolensis_palliatus
ENSMUSG00000022961	Son	100	99.119	ENSCGRG00001016220	Son	100	99.732	Cricetulus_griseus_chok1gshd
ENSMUSG00000022961	Son	94	99.065	ENSCGRG00000015260	Son	100	99.732	Cricetulus_griseus_crigri
ENSMUSG00000022961	Son	98	98.082	ENSDNOG00000036246	SON	77	79.898	Dasypus_novemcinctus
ENSMUSG00000022961	Son	100	99.119	ENSDORG00000028617	-	100	99.464	Dipodomys_ordii
ENSMUSG00000022961	Son	81	97.908	ENSETEG00000019427	SON	83	97.908	Echinops_telfairi
ENSMUSG00000022961	Son	100	99.196	ENSEASG00005006195	SON	78	80.789	Equus_asinus_asinus
ENSMUSG00000022961	Son	98	98.356	ENSECAG00000018098	SON	78	83.811	Equus_caballus
ENSMUSG00000022961	Son	74	97.585	ENSEEUG00000002352	SON	76	98.454	Erinaceus_europaeus
ENSMUSG00000022961	Son	72	51.482	ENSELUG00000003878	-	78	59.928	Esox_lucius
ENSMUSG00000022961	Son	100	98.018	ENSFCAG00000028680	-	100	99.464	Felis_catus
ENSMUSG00000022961	Son	95	71.233	ENSFALG00000002365	-	100	74.390	Ficedula_albicollis
ENSMUSG00000022961	Son	100	98.899	ENSFDAG00000019128	SON	100	99.196	Fukomys_damarensis
ENSMUSG00000022961	Son	98	73.423	ENSGALG00000052354	-	99	76.033	Gallus_gallus
ENSMUSG00000022961	Son	100	98.238	ENSGGOG00000010481	SON	100	99.464	Gorilla_gorilla
ENSMUSG00000022961	Son	100	98.899	ENSHGLG00000010432	SON	100	99.464	Heterocephalus_glaber_female
ENSMUSG00000022961	Son	80	98.630	ENSHGLG00100014915	SON	77	81.731	Heterocephalus_glaber_male
ENSMUSG00000022961	Son	100	98.899	ENSSTOG00000020593	SON	100	99.464	Ictidomys_tridecemlineatus
ENSMUSG00000022961	Son	100	99.339	ENSJJAG00000013491	-	100	99.732	Jaculus_jaculus
ENSMUSG00000022961	Son	98	66.079	ENSLACG00000013385	-	99	70.874	Latimeria_chalumnae
ENSMUSG00000022961	Son	80	66.027	ENSLOCG00000011021	-	75	66.173	Lepisosteus_oculatus
ENSMUSG00000022961	Son	100	98.930	ENSLAFG00000016307	SON	80	78.783	Loxodonta_africana
ENSMUSG00000022961	Son	100	99.464	ENSMFAG00000034427	SON	100	99.464	Macaca_fascicularis
ENSMUSG00000022961	Son	100	98.238	ENSMMUG00000005511	SON	100	99.464	Macaca_mulatta
ENSMUSG00000022961	Son	100	99.464	ENSMNEG00000031671	SON	100	99.464	Macaca_nemestrina
ENSMUSG00000022961	Son	100	99.464	ENSMLEG00000035039	SON	100	99.464	Mandrillus_leucophaeus
ENSMUSG00000022961	Son	80	71.622	ENSMGAG00000014526	-	95	72.727	Meleagris_gallopavo
ENSMUSG00000022961	Son	100	99.339	ENSMAUG00000002086	-	100	99.732	Mesocricetus_auratus
ENSMUSG00000022961	Son	100	99.196	ENSMICG00000033920	SON	100	99.196	Microcebus_murinus
ENSMUSG00000022961	Son	100	98.458	ENSMOCG00000012860	-	100	99.732	Microtus_ochrogaster
ENSMUSG00000022961	Son	75	51.989	ENSMALG00000006263	-	91	53.106	Monopterus_albus
ENSMUSG00000022961	Son	100	100.000	MGP_CAROLIEiJ_G0020965	Son	100	100.000	Mus_caroli
ENSMUSG00000022961	Son	100	100.000	MGP_PahariEiJ_G0016670	Son	100	100.000	Mus_pahari
ENSMUSG00000022961	Son	100	100.000	MGP_SPRETEiJ_G0021871	Son	100	100.000	Mus_spretus
ENSMUSG00000022961	Son	100	98.678	ENSNGAG00000000062	-	100	99.464	Nannospalax_galili
ENSMUSG00000022961	Son	100	99.464	ENSNLEG00000004002	SON	100	99.464	Nomascus_leucogenys
ENSMUSG00000022961	Son	100	97.587	ENSOPRG00000005068	SON	96	98.267	Ochotona_princeps
ENSMUSG00000022961	Son	100	98.678	ENSODEG00000003658	-	100	99.464	Octodon_degus
ENSMUSG00000022961	Son	81	56.522	ENSONIG00000003775	-	79	57.393	Oreochromis_niloticus
ENSMUSG00000022961	Son	99	99.464	ENSOCUG00000003867	SON	79	80.779	Oryctolagus_cuniculus
ENSMUSG00000022961	Son	90	46.860	ENSORLG00020014016	-	71	52.288	Oryzias_latipes_hni
ENSMUSG00000022961	Son	94	50.234	ENSORLG00015016415	-	78	50.234	Oryzias_latipes_hsok
ENSMUSG00000022961	Son	82	98.969	ENSOGAG00000027319	SON	82	81.320	Otolemur_garnettii
ENSMUSG00000022961	Son	100	98.238	ENSPPAG00000033712	SON	100	99.464	Pan_paniscus
ENSMUSG00000022961	Son	100	99.196	ENSPPRG00000019353	SON	100	99.464	Panthera_pardus
ENSMUSG00000022961	Son	100	99.196	ENSPTIG00000017100	SON	100	99.464	Panthera_tigris_altaica
ENSMUSG00000022961	Son	100	99.464	ENSPTRG00000013872	SON	100	99.464	Pan_troglodytes
ENSMUSG00000022961	Son	100	98.238	ENSPTRG00000052356	-	100	100.000	Pan_troglodytes
ENSMUSG00000022961	Son	100	99.464	ENSPANG00000024077	SON	100	99.464	Papio_anubis
ENSMUSG00000022961	Son	96	73.756	ENSPSIG00000008097	-	100	77.561	Pelodiscus_sinensis
ENSMUSG00000022961	Son	80	54.945	ENSPMGG00000015598	-	93	51.325	Periophthalmus_magnuspinnatus
ENSMUSG00000022961	Son	100	96.476	ENSPCIG00000012884	-	100	97.855	Phascolarctos_cinereus
ENSMUSG00000022961	Son	98	98.630	ENSPPYG00000011380	SON	78	82.762	Pongo_abelii
ENSMUSG00000022961	Son	82	98.969	ENSPCAG00000010170	SON	81	71.399	Procavia_capensis
ENSMUSG00000022961	Son	100	99.196	ENSPCOG00000015502	SON	100	99.196	Propithecus_coquereli
ENSMUSG00000022961	Son	100	97.855	ENSPVAG00000011186	SON	51	97.842	Pteropus_vampyrus
ENSMUSG00000022961	Son	100	100.000	ENSRNOG00000002021	Son	79	94.036	Rattus_norvegicus
ENSMUSG00000022961	Son	100	98.238	ENSRBIG00000044269	-	100	100.000	Rhinopithecus_bieti
ENSMUSG00000022961	Son	100	99.464	ENSRROG00000042156	SON	100	99.464	Rhinopithecus_roxellana
ENSMUSG00000022961	Son	100	99.464	ENSSBOG00000020885	SON	100	99.464	Saimiri_boliviensis_boliviensis
ENSMUSG00000022961	Son	100	90.349	ENSSHAG00000008266	SON	100	91.283	Sarcophilus_harrisii
ENSMUSG00000022961	Son	100	95.225	ENSSARG00000012369	SON	62	94.474	Sorex_araneus
ENSMUSG00000022961	Son	100	99.464	ENSSSCG00000023674	SON	79	82.847	Sus_scrofa
ENSMUSG00000022961	Son	95	69.635	ENSTGUG00000000486	-	100	72.927	Taeniopygia_guttata
ENSMUSG00000022961	Son	98	52.759	ENSTNIG00000014468	-	98	52.759	Tetraodon_nigroviridis
ENSMUSG00000022961	Son	80	99.507	ENSTBEG00000003193	SON	76	99.595	Tupaia_belangeri
ENSMUSG00000022961	Son	94	96.364	ENSTTRG00000004692	SON	76	83.992	Tursiops_truncatus
ENSMUSG00000022961	Son	94	95.174	ENSVPAG00000009150	SON	63	80.838	Vicugna_pacos
ENSMUSG00000022961	Son	98	96.986	ENSVVUG00000022974	SON	79	82.058	Vulpes_vulpes
ENSMUSG00000022961	Son	80	72.011	ENSXETG00000014115	son	94	69.565	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000226	microtubule cytoskeleton organization	-	ISO	Process
GO:0000281	mitotic cytokinesis	-	ISO	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005515	protein binding	9185665.15798186.18952841.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006397	mRNA processing	21873635.	IBA	Process
GO:0006397	mRNA processing	-	ISO	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0043066	negative regulation of apoptotic process	-	ISO	Process
GO:0043484	regulation of RNA splicing	-	ISO	Process
GO:0048024	regulation of mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0048024	regulation of mRNA splicing, via spliceosome	-	ISO	Process
GO:0050733	RS domain binding	15798186.	IPI	Function
GO:0051726	regulation of cell cycle	-	ISO	Process