EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000022983 (Gene tree)
Gene ID: 224432
Gene Symbol: Scaf4
Alias: Sfrs15|Sra4|Srsf15
Full Name: SR-related CTD-associated factor 4
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 58824 bases
Position: chr16:90225680-90284503
Accession: 2146350
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000132250	RRM_1	PF00076.22	7.5e-09	1	1
ENSMUSP00000156174	RRM_1	PF00076.22	7.5e-09	1	1
ENSMUSP00000044472	RRM_1	PF00076.22	7.6e-09	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000231443	-	429	-	-	- (aa)	-	-
ENSMUST00000232000	-	574	-	-	- (aa)	-	-
ENSMUST00000039280	-	4266	XM_006523008	ENSMUSP00000044472	1209 (aa)	XP_006523071	Q6PFF0
ENSMUST00000231594	-	1165	-	-	- (aa)	-	-
ENSMUST00000163419	-	4175	XM_006523011	ENSMUSP00000132250	1183 (aa)	XP_006523074	Q7TSH6
ENSMUST00000232371	-	4367	XM_006523010	ENSMUSP00000156174	1184 (aa)	XP_006523073	UPI0003D6DDB5
ENSMUST00000231572	-	508	-	-	- (aa)	-	-
ENSMUST00000231776	-	527	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000022983's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000022983's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000022983	Scaf4	95	89.909	ENSG00000156304	SCAF4	100	83.470	Homo_sapiens
ENSMUSG00000022983	Scaf4	69	88.258	ENSAMEG00000014987	SCAF4	97	88.258	Ailuropoda_melanoleuca
ENSMUSG00000022983	Scaf4	95	74.093	ENSAPLG00000002509	SCAF4	59	71.271	Anas_platyrhynchos
ENSMUSG00000022983	Scaf4	95	89.575	ENSANAG00000037494	SCAF4	100	83.565	Aotus_nancymaae
ENSMUSG00000022983	Scaf4	95	89.433	ENSBTAG00000018855	SCAF4	100	82.310	Bos_taurus
ENSMUSG00000022983	Scaf4	95	89.345	ENSCJAG00000008993	SCAF4	100	83.265	Callithrix_jacchus
ENSMUSG00000022983	Scaf4	95	89.419	ENSCAFG00000008863	SCAF4	99	89.032	Canis_familiaris
ENSMUSG00000022983	Scaf4	99	83.200	ENSCAFG00020026019	SCAF4	100	89.032	Canis_lupus_dingo
ENSMUSG00000022983	Scaf4	95	89.046	ENSCHIG00000008385	SCAF4	100	82.570	Capra_hircus
ENSMUSG00000022983	Scaf4	99	82.322	ENSTSYG00000011344	SCAF4	98	84.049	Carlito_syrichta
ENSMUSG00000022983	Scaf4	96	88.387	ENSCPOG00000012443	SCAF4	100	88.258	Cavia_porcellus
ENSMUSG00000022983	Scaf4	95	89.548	ENSCCAG00000033727	SCAF4	100	83.210	Cebus_capucinus
ENSMUSG00000022983	Scaf4	95	89.460	ENSCATG00000030379	SCAF4	100	83.293	Cercocebus_atys
ENSMUSG00000022983	Scaf4	94	89.130	ENSCLAG00000006298	SCAF4	100	82.324	Chinchilla_lanigera
ENSMUSG00000022983	Scaf4	95	90.464	ENSCSAG00000009438	SCAF4	100	83.510	Chlorocebus_sabaeus
ENSMUSG00000022983	Scaf4	95	90.285	ENSCANG00000029847	SCAF4	100	83.702	Colobus_angolensis_palliatus
ENSMUSG00000022983	Scaf4	99	89.925	ENSCGRG00001020821	Scaf4	100	89.221	Cricetulus_griseus_chok1gshd
ENSMUSG00000022983	Scaf4	99	90.301	ENSCGRG00000014360	Scaf4	100	89.241	Cricetulus_griseus_crigri
ENSMUSG00000022983	Scaf4	100	85.132	ENSDNOG00000019014	SCAF4	94	80.312	Dasypus_novemcinctus
ENSMUSG00000022983	Scaf4	88	84.107	ENSETEG00000000583	SCAF4	97	82.802	Echinops_telfairi
ENSMUSG00000022983	Scaf4	95	90.026	ENSEASG00005007756	SCAF4	100	89.161	Equus_asinus_asinus
ENSMUSG00000022983	Scaf4	95	90.026	ENSECAG00000014248	SCAF4	100	89.290	Equus_caballus
ENSMUSG00000022983	Scaf4	55	55.932	ENSELUG00000002779	SCAF8	61	69.565	Esox_lucius
ENSMUSG00000022983	Scaf4	95	89.508	ENSFCAG00000002228	SCAF4	100	88.903	Felis_catus
ENSMUSG00000022983	Scaf4	99	83.876	ENSFDAG00000017780	SCAF4	100	90.194	Fukomys_damarensis
ENSMUSG00000022983	Scaf4	55	60.075	ENSFHEG00000007634	scaf4b	55	73.418	Fundulus_heteroclitus
ENSMUSG00000022983	Scaf4	99	75.321	ENSGALG00000033965	SCAF4	59	75.134	Gallus_gallus
ENSMUSG00000022983	Scaf4	88	86.410	ENSGGOG00000015557	SCAF4	99	80.473	Gorilla_gorilla
ENSMUSG00000022983	Scaf4	95	89.290	ENSHGLG00000010582	SCAF4	100	89.290	Heterocephalus_glaber_female
ENSMUSG00000022983	Scaf4	94	89.290	ENSHGLG00100009441	SCAF4	100	89.290	Heterocephalus_glaber_male
ENSMUSG00000022983	Scaf4	65	58.568	ENSIPUG00000011285	scaf4	52	74.390	Ictalurus_punctatus
ENSMUSG00000022983	Scaf4	97	87.167	ENSSTOG00000004450	SCAF4	100	85.697	Ictidomys_tridecemlineatus
ENSMUSG00000022983	Scaf4	92	89.842	ENSJJAG00000019447	Scaf4	99	88.601	Jaculus_jaculus
ENSMUSG00000022983	Scaf4	57	59.770	ENSKMAG00000005742	scaf4b	54	75.159	Kryptolebias_marmoratus
ENSMUSG00000022983	Scaf4	89	63.736	ENSLACG00000013913	SCAF4	59	64.095	Latimeria_chalumnae
ENSMUSG00000022983	Scaf4	82	59.360	ENSLOCG00000009162	scaf4a	82	57.379	Lepisosteus_oculatus
ENSMUSG00000022983	Scaf4	95	89.290	ENSLAFG00000010710	SCAF4	94	90.476	Loxodonta_africana
ENSMUSG00000022983	Scaf4	95	89.757	ENSMFAG00000037668	SCAF4	100	82.764	Macaca_fascicularis
ENSMUSG00000022983	Scaf4	95	89.629	ENSMMUG00000001712	SCAF4	100	82.683	Macaca_mulatta
ENSMUSG00000022983	Scaf4	95	89.514	ENSMNEG00000032966	SCAF4	100	82.616	Macaca_nemestrina
ENSMUSG00000022983	Scaf4	95	89.770	ENSMLEG00000039674	SCAF4	100	83.251	Mandrillus_leucophaeus
ENSMUSG00000022983	Scaf4	99	75.000	ENSMGAG00000014515	SCAF4	59	75.472	Meleagris_gallopavo
ENSMUSG00000022983	Scaf4	91	90.837	ENSMAUG00000013307	Scaf4	100	84.066	Mesocricetus_auratus
ENSMUSG00000022983	Scaf4	100	86.211	ENSMICG00000005256	SCAF4	100	83.115	Microcebus_murinus
ENSMUSG00000022983	Scaf4	100	89.448	ENSMOCG00000012087	Scaf4	100	90.323	Microtus_ochrogaster
ENSMUSG00000022983	Scaf4	99	77.374	ENSMODG00000021040	SCAF4	99	75.738	Monodelphis_domestica
ENSMUSG00000022983	Scaf4	100	97.815	MGP_CAROLIEiJ_G0020944	Scaf4	100	97.815	Mus_caroli
ENSMUSG00000022983	Scaf4	100	95.905	MGP_PahariEiJ_G0016649	Scaf4	100	95.905	Mus_pahari
ENSMUSG00000022983	Scaf4	100	97.451	MGP_SPRETEiJ_G0021850	Scaf4	100	97.451	Mus_spretus
ENSMUSG00000022983	Scaf4	95	88.689	ENSMPUG00000001078	SCAF4	100	88.860	Mustela_putorius_furo
ENSMUSG00000022983	Scaf4	99	73.714	ENSMLUG00000011472	SCAF4	78	77.894	Myotis_lucifugus
ENSMUSG00000022983	Scaf4	96	90.128	ENSNGAG00000005214	Scaf4	99	90.206	Nannospalax_galili
ENSMUSG00000022983	Scaf4	96	89.909	ENSNLEG00000003569	SCAF4	100	83.633	Nomascus_leucogenys
ENSMUSG00000022983	Scaf4	74	88.587	ENSOPRG00000007016	SCAF4	76	88.043	Ochotona_princeps
ENSMUSG00000022983	Scaf4	95	90.065	ENSODEG00000002718	SCAF4	100	82.602	Octodon_degus
ENSMUSG00000022983	Scaf4	95	86.082	ENSOCUG00000008336	SCAF4	100	80.506	Oryctolagus_cuniculus
ENSMUSG00000022983	Scaf4	99	79.820	ENSOGAG00000014653	SCAF4	99	80.344	Otolemur_garnettii
ENSMUSG00000022983	Scaf4	99	83.962	ENSOARG00000013894	SCAF4	99	81.885	Ovis_aries
ENSMUSG00000022983	Scaf4	95	89.909	ENSPPAG00000028535	SCAF4	100	83.470	Pan_paniscus
ENSMUSG00000022983	Scaf4	95	89.161	ENSPPRG00000000635	SCAF4	100	88.774	Panthera_pardus
ENSMUSG00000022983	Scaf4	95	86.968	ENSPTIG00000021578	SCAF4	99	84.211	Panthera_tigris_altaica
ENSMUSG00000022983	Scaf4	95	89.909	ENSPTRG00000013848	SCAF4	100	83.470	Pan_troglodytes
ENSMUSG00000022983	Scaf4	95	89.629	ENSPANG00000017332	SCAF4	100	83.089	Papio_anubis
ENSMUSG00000022983	Scaf4	94	75.597	ENSPSIG00000014242	SCAF4	56	87.365	Pelodiscus_sinensis
ENSMUSG00000022983	Scaf4	94	80.481	ENSPCIG00000028183	SCAF4	91	79.560	Phascolarctos_cinereus
ENSMUSG00000022983	Scaf4	67	54.146	ENSPFOG00000017156	scaf4a	53	73.780	Poecilia_formosa
ENSMUSG00000022983	Scaf4	57	61.481	ENSPLAG00000001972	scaf4a	61	74.390	Poecilia_latipinna
ENSMUSG00000022983	Scaf4	95	89.664	ENSPPYG00000011355	SCAF4	100	83.401	Pongo_abelii
ENSMUSG00000022983	Scaf4	92	82.713	ENSPCAG00000009998	SCAF4	100	70.270	Procavia_capensis
ENSMUSG00000022983	Scaf4	100	85.861	ENSPCOG00000018710	SCAF4	100	83.102	Propithecus_coquereli
ENSMUSG00000022983	Scaf4	95	88.990	ENSPVAG00000005220	SCAF4	100	88.645	Pteropus_vampyrus
ENSMUSG00000022983	Scaf4	65	56.974	ENSPNAG00000016892	scaf4a	60	69.718	Pygocentrus_nattereri
ENSMUSG00000022983	Scaf4	100	91.500	ENSRNOG00000002104	Scaf4	100	92.000	Rattus_norvegicus
ENSMUSG00000022983	Scaf4	94	88.432	ENSRBIG00000040007	SCAF4	95	91.324	Rhinopithecus_bieti
ENSMUSG00000022983	Scaf4	95	90.155	ENSRROG00000029488	SCAF4	100	83.620	Rhinopithecus_roxellana
ENSMUSG00000022983	Scaf4	100	77.321	ENSSHAG00000001581	SCAF4	99	81.889	Sarcophilus_harrisii
ENSMUSG00000022983	Scaf4	61	57.621	ENSSMAG00000003738	scaf4b	54	72.785	Scophthalmus_maximus
ENSMUSG00000022983	Scaf4	98	81.723	ENSSARG00000009994	SCAF4	99	79.870	Sorex_araneus
ENSMUSG00000022983	Scaf4	95	85.032	ENSSSCG00000021023	SCAF4	100	85.224	Sus_scrofa
ENSMUSG00000022983	Scaf4	76	71.658	ENSTGUG00000013464	SCAF4	61	71.056	Taeniopygia_guttata
ENSMUSG00000022983	Scaf4	94	87.565	ENSTTRG00000010963	SCAF4	100	87.097	Tursiops_truncatus
ENSMUSG00000022983	Scaf4	95	86.010	ENSUAMG00000008860	SCAF4	100	85.419	Ursus_americanus
ENSMUSG00000022983	Scaf4	94	87.953	ENSUMAG00000016962	SCAF4	100	84.046	Ursus_maritimus
ENSMUSG00000022983	Scaf4	94	89.419	ENSVVUG00000002953	SCAF4	100	89.032	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006397	mRNA processing	-	ISO	Process
GO:0008022	protein C-terminus binding	-	ISO	Function