EuRBPDB

Description

Ensembl ID: ENSMUSG00000023018 (Gene tree)
Gene ID: 83797
Gene Symbol: Smarcd1
Alias: Baf60a|D15Kz1
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily d%2C member 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 11863
Position: chr15: 99702129-99713991
Accession: 1933623
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000229845	-	378	-	ENSMUSP00000155667	98 (aa)	-	A0A2R8VI28
ENSMUST00000228984	-	322	-	ENSMUSP00000154932	95 (aa)	-	A0A2R8VHB7
ENSMUST00000023759	-	3307	-	ENSMUSP00000023759	515 (aa)	-	Q61466
ENSMUST00000229236	-	1842	-	ENSMUSP00000155750	474 (aa)	-	A0A2R8VKP3
ENSMUST00000229968	-	810	-	-	- (aa)	-	-
ENSMUST00000230530	-	712	-	ENSMUSP00000155619	175 (aa)	-	A0A2R8VI06
ENSMUST00000230748	-	700	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04714	Thermogenesis	KEGG
mmu05225	Hepatocellular carcinoma	KEGG

Protein-Protein Interaction (PPI)

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003682	chromatin binding	-	ISO	Function
GO:0005102	signaling receptor binding	-	ISO	Function
GO:0005515	protein binding	17255092.18303029.22285184.22438823.24421395.25107474.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0006337	nucleosome disassembly	-	ISO	Process
GO:0006338	chromatin remodeling	-	ISO	Process
GO:0007399	nervous system development	-	IEA	Process
GO:0016514	SWI/SNF complex	29374058.	IDA	Component
GO:0016514	SWI/SNF complex	-	ISO	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0048096	chromatin-mediated maintenance of transcription	-	ISO	Process
GO:0060090	molecular adaptor activity	-	ISO	Function
GO:0071564	npBAF complex	17640523.	IDA	Component
GO:0071565	nBAF complex	17640523.	IDA	Component