EuRBPDB

Description

Ensembl ID: ENSMUSG00000023022 (Gene tree)
Gene ID: 65970
Gene Symbol: Lima1
Alias: 1110021C24Rik|3526402A12Rik|EPLIN|epithelial protein lost in neoplasm
Full Name: LIM domain and actin binding 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 96987
Position: chr15: 99778470-99875456
Accession: 1920992
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000109024	-	4109	XM_006521245	ENSMUSP00000104652	593 (aa)	XP_006521308	Q9ERG0
ENSMUST00000073691	-	4243	-	ENSMUSP00000073371	753 (aa)	-	Q9ERG0
ENSMUST00000172119	-	506	-	-	- (aa)	-	-
ENSMUST00000230033	-	405	-	-	- (aa)	-	-
ENSMUST00000171450	-	2680	-	-	- (aa)	-	-
ENSMUST00000231121	-	448	-	ENSMUSP00000155772	109 (aa)	-	A0A2R8VI67

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000023022	Lima1	100	82.569	ENSG00000050405	LIMA1	98	82.569	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001725	stress fiber	-	ISO	Component
GO:0001726	ruffle	17875928.	IDA	Component
GO:0003779	actin binding	-	IEA	Function
GO:0003785	actin monomer binding	-	ISO	Function
GO:0005515	protein binding	18093941.23746204.29880681.	IPI	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005903	brush border	22114352.	IDA	Component
GO:0005925	focal adhesion	-	ISO	Component
GO:0006629	lipid metabolic process	-	IEA	Process
GO:0008202	steroid metabolic process	-	IEA	Process
GO:0008203	cholesterol metabolic process	-	IEA	Process
GO:0015629	actin cytoskeleton	11179679.	IDA	Component
GO:0015629	actin cytoskeleton	-	ISO	Component
GO:0016020	membrane	-	IEA	Component
GO:0016477	cell migration	17875928.	IMP	Process
GO:0030299	intestinal cholesterol absorption	29880681.	IMP	Process
GO:0030835	negative regulation of actin filament depolymerization	-	ISO	Process
GO:0031526	brush border membrane	29880681.	IDA	Component
GO:0031529	ruffle organization	17875928.	IMP	Process
GO:0031529	ruffle organization	-	ISO	Process
GO:0032154	cleavage furrow	-	ISO	Component
GO:0042632	cholesterol homeostasis	29880681.	IMP	Process
GO:0042995	cell projection	-	IEA	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0051015	actin filament binding	17875928.	IMP	Function
GO:0051015	actin filament binding	-	ISO	Function
GO:0051017	actin filament bundle assembly	-	ISO	Process