EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000163855	-	831	-	ENSMUSP00000126491	107 (aa)	-	E9PYW2
ENSMUST00000165804	-	383	-	ENSMUSP00000127969	76 (aa)	-	E9PZB1
ENSMUST00000169408	-	705	-	ENSMUSP00000129833	55 (aa)	-	E9Q356
ENSMUST00000168103	-	861	-	ENSMUSP00000155718	35 (aa)	-	A0A2R8VKM7
ENSMUST00000166809	-	426	-	-	- (aa)	-	-
ENSMUST00000023769	-	2365	XM_006520351	ENSMUSP00000023769	269 (aa)	XP_006520414	P81269
ENSMUST00000166435	-	312	-	ENSMUSP00000127985	100 (aa)	-	F6U840
ENSMUST00000171869	-	550	-	ENSMUSP00000131278	67 (aa)	-	E9PZ49
ENSMUST00000172154	-	604	-	ENSMUSP00000132907	178 (aa)	-	E9PWM8

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04925	Aldosterone synthesis and secretion	KEGG
mmu05202	Transcriptional misregulation in cancer	KEGG

Protein-Protein Interaction (PPI)

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	-	ISO	Function
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	-	ISO	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	-	ISO	Function
GO:0003677	DNA binding	11354513.	IDA	Function
GO:0003700	DNA-binding transcription factor activity	-	IEA	Function
GO:0005634	nucleus	8798441.	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005667	transcription factor complex	21873635.	IBA	Component
GO:0005667	transcription factor complex	11354513.	IDA	Component
GO:0005667	transcription factor complex	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0006357	regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0010976	positive regulation of neuron projection development	-	ISO	Process
GO:0034622	cellular protein-containing complex assembly	-	ISO	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0043565	sequence-specific DNA binding	-	ISO	Function
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0045740	positive regulation of DNA replication	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0046982	protein heterodimerization activity	-	ISO	Function
GO:1990590	ATF1-ATF4 transcription factor complex	12871976.	IDA	Component
GO:1990590	ATF1-ATF4 transcription factor complex	-	ISO	Component