EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000023087 (Gene tree)
Gene ID
12457
Gene Symbol
Noct
Alias
Ccr4|Ccrn4l
Full Name
nocturnin
Gene Type
protein_coding
Species
Mus_musculus
Status
putative
Strand
Plus strand
Length
27198 bases
Position
chr3:51224447-51251644
Accession
109382
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000141416Exo_endo_phosPF03372.234.4e-2411
ENSMUSP00000023849Exo_endo_phosPF03372.236.7e-2411
ENSMUSP00000130347Exo_endo_phosPF03372.236.7e-2411
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000167780-2992-ENSMUSP00000130347429 (aa)-O35710
ENSMUST00000023849-3059-ENSMUSP00000023849429 (aa)-O35710
ENSMUST00000144826-9797XM_006500956ENSMUSP00000141416365 (aa)XP_006501019O35710
ENSMUST00000193018-805-ENSMUSP00000142216117 (aa)-A0A0A6YY01
Gene Model
Click here to download ENSMUSG00000023087's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000023087's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000023087Noct5531.754ENSMUSG00000026634Angel29531.429
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000023087Noct9995.278ENSG00000151014NOCT9990.845Homo_sapiens
ENSMUSG00000023087Noct9961.351ENSAPOG00000005454noctb9961.351Acanthochromis_polyacanthus
ENSMUSG00000023087Noct10061.214ENSAPOG00000016421nocta8460.836Acanthochromis_polyacanthus
ENSMUSG00000023087Noct9993.611ENSAMEG00000011061NOCT9593.151Ailuropoda_melanoleuca
ENSMUSG00000023087Noct8963.746ENSACIG00000013054noctb8063.746Amphilophus_citrinellus
ENSMUSG00000023087Noct9958.915ENSAOCG00000005363noctb9958.915Amphiprion_ocellaris
ENSMUSG00000023087Noct9861.456ENSAOCG00000014089nocta9955.507Amphiprion_ocellaris
ENSMUSG00000023087Noct9959.173ENSAPEG00000015529noctb9959.173Amphiprion_percula
ENSMUSG00000023087Noct9961.170ENSAPEG00000018097nocta9955.629Amphiprion_percula
ENSMUSG00000023087Noct9958.549ENSATEG00000022975noctb9958.015Anabas_testudineus
ENSMUSG00000023087Noct9962.632ENSATEG00000015612nocta9262.632Anabas_testudineus
ENSMUSG00000023087Noct10080.822ENSACAG00000001961NOCT9880.488Anolis_carolinensis
ENSMUSG00000023087Noct10095.068ENSANAG00000009701NOCT10090.023Aotus_nancymaae
ENSMUSG00000023087Noct9959.621ENSACLG00000010843noctb9859.621Astatotilapia_calliptera
ENSMUSG00000023087Noct9862.943ENSAMXG00000002383nocta8462.599Astyanax_mexicanus
ENSMUSG00000023087Noct9993.906ENSBTAG00000005998NOCT10087.588Bos_taurus
ENSMUSG00000023087Noct10095.068ENSCJAG00000003158NOCT10090.909Callithrix_jacchus
ENSMUSG00000023087Noct10094.521ENSCAFG00000003725NOCT10094.521Canis_familiaris
ENSMUSG00000023087Noct10094.521ENSCAFG00020020824NOCT10088.811Canis_lupus_dingo
ENSMUSG00000023087Noct9994.460ENSCHIG00000023612NOCT8188.525Capra_hircus
ENSMUSG00000023087Noct7690.942ENSTSYG00000032273NOCT8890.975Carlito_syrichta
ENSMUSG00000023087Noct10093.973ENSCAPG00000005005NOCT9593.767Cavia_aperea
ENSMUSG00000023087Noct10093.973ENSCPOG00000003827NOCT10088.194Cavia_porcellus
ENSMUSG00000023087Noct10095.342ENSCCAG00000022628NOCT10090.487Cebus_capucinus
ENSMUSG00000023087Noct10094.247ENSCATG00000041737-10089.095Cercocebus_atys
ENSMUSG00000023087Noct10068.665ENSCATG00000012533-9268.548Cercocebus_atys
ENSMUSG00000023087Noct10093.973ENSCLAG00000003384NOCT9093.973Chinchilla_lanigera
ENSMUSG00000023087Noct10094.247ENSCSAG00000003545NOCT10094.247Chlorocebus_sabaeus
ENSMUSG00000023087Noct10093.151ENSCHOG00000004354NOCT9993.169Choloepus_hoffmanni
ENSMUSG00000023087Noct10084.932ENSCPBG00000027624NOCT9275.831Chrysemys_picta_bellii
ENSMUSG00000023087Noct10080.000ENSCANG00000039017-9579.730Colobus_angolensis_palliatus
ENSMUSG00000023087Noct9995.278ENSCANG00000031969-10089.559Colobus_angolensis_palliatus
ENSMUSG00000023087Noct10096.438ENSCGRG00001021050Noct10093.240Cricetulus_griseus_chok1gshd
ENSMUSG00000023087Noct10096.438ENSCGRG00000014052Noct9996.042Cricetulus_griseus_crigri
ENSMUSG00000023087Noct9959.409ENSCSEG00000014449noctb9759.409Cynoglossus_semilaevis
ENSMUSG00000023087Noct9066.279ENSCVAG00000001857nocta9158.010Cyprinodon_variegatus
ENSMUSG00000023087Noct9958.355ENSCVAG00000001093noctb9958.158Cyprinodon_variegatus
ENSMUSG00000023087Noct9863.271ENSDARG00000078525noctb9963.271Danio_rerio
ENSMUSG00000023087Noct10064.191ENSDARG00000077726nocta9958.503Danio_rerio
ENSMUSG00000023087Noct10094.521ENSDNOG00000036912NOCT10090.046Dasypus_novemcinctus
ENSMUSG00000023087Noct10088.587ENSDORG00000000869Noct10089.130Dipodomys_ordii
ENSMUSG00000023087Noct7748.675FBgn0261808cu7148.675Drosophila_melanogaster
ENSMUSG00000023087Noct10095.068ENSEASG00005007871NOCT10089.791Equus_asinus_asinus
ENSMUSG00000023087Noct10095.068ENSECAG00000022676NOCT10089.791Equus_caballus
ENSMUSG00000023087Noct6488.889ENSEEUG00000010558-9988.889Erinaceus_europaeus
ENSMUSG00000023087Noct7588.235ENSEEUG00000013650-10088.235Erinaceus_europaeus
ENSMUSG00000023087Noct9863.260ENSELUG00000002538nocta9863.260Esox_lucius
ENSMUSG00000023087Noct9860.215ENSELUG00000011415noctb8760.000Esox_lucius
ENSMUSG00000023087Noct10094.521ENSFCAG00000030026NOCT10089.095Felis_catus
ENSMUSG00000023087Noct10083.014ENSFALG00000004876NOCT10083.014Ficedula_albicollis
ENSMUSG00000023087Noct7695.668ENSFDAG00000018163NOCT10095.668Fukomys_damarensis
ENSMUSG00000023087Noct10062.698ENSFHEG00000005067nocta8662.698Fundulus_heteroclitus
ENSMUSG00000023087Noct9956.995ENSFHEG00000013623noctb9957.254Fundulus_heteroclitus
ENSMUSG00000023087Noct10082.740ENSGALG00000032957NOCT9681.941Gallus_gallus
ENSMUSG00000023087Noct9959.686ENSGAFG00000015232noctb9959.948Gambusia_affinis
ENSMUSG00000023087Noct10062.567ENSGAFG00000019587nocta8463.102Gambusia_affinis
ENSMUSG00000023087Noct10085.753ENSGAGG00000004412NOCT10085.753Gopherus_agassizii
ENSMUSG00000023087Noct9974.533ENSGGOG00000028610-8595.668Gorilla_gorilla
ENSMUSG00000023087Noct9062.985ENSHBUG00000001687noctb9262.985Haplochromis_burtoni
ENSMUSG00000023087Noct10094.795ENSHGLG00000019383NOCT10086.014Heterocephalus_glaber_female
ENSMUSG00000023087Noct10095.068ENSHGLG00100012584NOCT9894.865Heterocephalus_glaber_male
ENSMUSG00000023087Noct9957.838ENSHCOG00000013999noctb9957.838Hippocampus_comes
ENSMUSG00000023087Noct9960.858ENSHCOG00000005299nocta8561.008Hippocampus_comes
ENSMUSG00000023087Noct9065.165ENSIPUG00000017932Ccrn4l8461.995Ictalurus_punctatus
ENSMUSG00000023087Noct10095.068ENSSTOG00000014818NOCT9995.082Ictidomys_tridecemlineatus
ENSMUSG00000023087Noct10093.716ENSJJAG00000019776Noct10088.222Jaculus_jaculus
ENSMUSG00000023087Noct9860.156ENSKMAG00000019996noctb8060.156Kryptolebias_marmoratus
ENSMUSG00000023087Noct10063.089ENSKMAG00000001493nocta8662.597Kryptolebias_marmoratus
ENSMUSG00000023087Noct10063.255ENSLBEG00000024022nocta8363.255Labrus_bergylta
ENSMUSG00000023087Noct9953.846ENSLBEG00000021526-9953.846Labrus_bergylta
ENSMUSG00000023087Noct9860.847ENSLBEG00000017977noctb9960.847Labrus_bergylta
ENSMUSG00000023087Noct10073.973ENSLACG00000015874NOCT10065.996Latimeria_chalumnae
ENSMUSG00000023087Noct10072.603ENSLOCG00000010593nocta10065.695Lepisosteus_oculatus
ENSMUSG00000023087Noct10093.973ENSLAFG00000017184NOCT10093.750Loxodonta_africana
ENSMUSG00000023087Noct10094.521ENSMFAG00000002713-10089.559Macaca_fascicularis
ENSMUSG00000023087Noct10076.712ENSMFAG00000045037-9276.423Macaca_fascicularis
ENSMUSG00000023087Noct10094.521ENSMMUG00000004983-10094.521Macaca_mulatta
ENSMUSG00000023087Noct10079.178ENSMMUG00000030791-9278.862Macaca_mulatta
ENSMUSG00000023087Noct10068.665ENSMNEG00000007123-9268.464Macaca_nemestrina
ENSMUSG00000023087Noct10094.521ENSMNEG00000042407-10089.559Macaca_nemestrina
ENSMUSG00000023087Noct10094.521ENSMLEG00000040699-10089.559Mandrillus_leucophaeus
ENSMUSG00000023087Noct10069.210ENSMLEG00000029801-10069.399Mandrillus_leucophaeus
ENSMUSG00000023087Noct9962.105ENSMAMG00000002501nocta8861.757Mastacembelus_armatus
ENSMUSG00000023087Noct9959.845ENSMAMG00000006732noctb9958.838Mastacembelus_armatus
ENSMUSG00000023087Noct9957.662ENSMZEG00005011616noctb9857.662Maylandia_zebra
ENSMUSG00000023087Noct10083.014ENSMGAG00000002778NOCT9682.210Meleagris_gallopavo
ENSMUSG00000023087Noct10095.616ENSMAUG00000013688Noct10095.616Mesocricetus_auratus
ENSMUSG00000023087Noct10094.247ENSMICG00000046478NOCT10094.247Microcebus_murinus
ENSMUSG00000023087Noct10094.247ENSMOCG00000013676Noct9990.909Microtus_ochrogaster
ENSMUSG00000023087Noct9957.143ENSMMOG00000006622noctb9957.143Mola_mola
ENSMUSG00000023087Noct9861.765ENSMMOG00000001406nocta9760.825Mola_mola
ENSMUSG00000023087Noct9990.000ENSMODG00000000087NOCT9978.700Monodelphis_domestica
ENSMUSG00000023087Noct9959.459ENSMALG00000021977noctb9959.459Monopterus_albus
ENSMUSG00000023087Noct9761.186ENSMALG00000000329nocta9455.405Monopterus_albus
ENSMUSG00000023087Noct10099.452MGP_CAROLIEiJ_G0024971Noct10099.301Mus_caroli
ENSMUSG00000023087Noct10099.726MGP_PahariEiJ_G0026412Noct10099.534Mus_pahari
ENSMUSG00000023087Noct10099.534MGP_SPRETEiJ_G0025906Noct10099.534Mus_spretus
ENSMUSG00000023087Noct10095.342ENSMPUG00000016137NOCT10095.342Mustela_putorius_furo
ENSMUSG00000023087Noct9989.560ENSMLUG00000009023NOCT9989.130Myotis_lucifugus
ENSMUSG00000023087Noct10096.438ENSNGAG00000010135Noct10096.438Nannospalax_galili
ENSMUSG00000023087Noct9972.414ENSNBRG00000017964noctb8360.163Neolamprologus_brichardi
ENSMUSG00000023087Noct9994.780ENSNLEG00000014018NOCT9994.795Nomascus_leucogenys
ENSMUSG00000023087Noct10090.411ENSMEUG00000009500NOCT9990.437Notamacropus_eugenii
ENSMUSG00000023087Noct10093.699ENSOPRG00000003306NOCT10088.167Ochotona_princeps
ENSMUSG00000023087Noct10094.247ENSODEG00000003057NOCT10088.631Octodon_degus
ENSMUSG00000023087Noct9959.836ENSONIG00000003358noctb9958.377Oreochromis_niloticus
ENSMUSG00000023087Noct9980.274ENSOANG00000013761NOCT8480.328Ornithorhynchus_anatinus
ENSMUSG00000023087Noct10094.521ENSOCUG00000005465NOCT10089.277Oryctolagus_cuniculus
ENSMUSG00000023087Noct9959.786ENSORLG00000002100noctb8959.574Oryzias_latipes
ENSMUSG00000023087Noct9960.054ENSORLG00020013826noctb9960.054Oryzias_latipes_hni
ENSMUSG00000023087Noct10061.600ENSORLG00015019270nocta8760.950Oryzias_latipes_hsok
ENSMUSG00000023087Noct9959.367ENSORLG00015013405noctb9259.269Oryzias_latipes_hsok
ENSMUSG00000023087Noct9962.032ENSOMEG00000010743nocta8662.032Oryzias_melastigma
ENSMUSG00000023087Noct9960.490ENSOMEG00000021625noctb9260.054Oryzias_melastigma
ENSMUSG00000023087Noct10093.425ENSOGAG00000008532NOCT10089.744Otolemur_garnettii
ENSMUSG00000023087Noct9994.460ENSOARG00000014103NOCT9093.699Ovis_aries
ENSMUSG00000023087Noct9994.780ENSPPAG00000042856NOCT9994.780Pan_paniscus
ENSMUSG00000023087Noct10094.521ENSPPRG00000009488NOCT10089.095Panthera_pardus
ENSMUSG00000023087Noct10094.521ENSPTIG00000008672NOCT10094.521Panthera_tigris_altaica
ENSMUSG00000023087Noct9994.780ENSPTRG00000016448NOCT9994.780Pan_troglodytes
ENSMUSG00000023087Noct10094.521ENSPANG00000029213NOCT10089.559Papio_anubis
ENSMUSG00000023087Noct10060.548ENSPKIG00000013368NOCT10060.548Paramormyrops_kingsleyae
ENSMUSG00000023087Noct10064.932ENSPKIG00000022066nocta10059.009Paramormyrops_kingsleyae
ENSMUSG00000023087Noct10084.384ENSPSIG00000010338NOCT9174.945Pelodiscus_sinensis
ENSMUSG00000023087Noct9861.022ENSPMGG00000019525noctb9961.022Periophthalmus_magnuspinnatus
ENSMUSG00000023087Noct9962.155ENSPMGG00000004558nocta8861.749Periophthalmus_magnuspinnatus
ENSMUSG00000023087Noct10096.164ENSPEMG00000016096Noct10096.164Peromyscus_maniculatus_bairdii
ENSMUSG00000023087Noct9948.021ENSPMAG00000002990nocta9948.021Petromyzon_marinus
ENSMUSG00000023087Noct10090.959ENSPCIG00000027121NOCT10079.341Phascolarctos_cinereus
ENSMUSG00000023087Noct9863.859ENSPFOG00000004800nocta8463.467Poecilia_formosa
ENSMUSG00000023087Noct9959.115ENSPFOG00000015717noctb9959.375Poecilia_formosa
ENSMUSG00000023087Noct9959.115ENSPLAG00000016228noctb9959.375Poecilia_latipinna
ENSMUSG00000023087Noct10063.636ENSPLAG00000004749nocta10063.636Poecilia_latipinna
ENSMUSG00000023087Noct9863.859ENSPMEG00000008265nocta9164.267Poecilia_mexicana
ENSMUSG00000023087Noct9958.594ENSPMEG00000019690noctb9958.854Poecilia_mexicana
ENSMUSG00000023087Noct9863.587ENSPREG00000006876nocta8463.733Poecilia_reticulata
ENSMUSG00000023087Noct9958.333ENSPREG00000001623noctb9958.594Poecilia_reticulata
ENSMUSG00000023087Noct9994.780ENSPPYG00000015067NOCT9990.233Pongo_abelii
ENSMUSG00000023087Noct10080.000ENSPCAG00000016793NOCT10077.726Procavia_capensis
ENSMUSG00000023087Noct10094.795ENSPCOG00000013805NOCT10089.016Propithecus_coquereli
ENSMUSG00000023087Noct10094.795ENSPVAG00000017841NOCT10090.443Pteropus_vampyrus
ENSMUSG00000023087Noct9959.350ENSPNYG00000003447noctb9859.350Pundamilia_nyererei
ENSMUSG00000023087Noct9864.305ENSPNAG00000029426nocta8463.660Pygocentrus_nattereri
ENSMUSG00000023087Noct10097.808ENSRNOG00000010799Noct10097.436Rattus_norvegicus
ENSMUSG00000023087Noct9995.278ENSRBIG00000032388-10089.559Rhinopithecus_bieti
ENSMUSG00000023087Noct10075.616ENSRBIG00000040138-8675.946Rhinopithecus_bieti
ENSMUSG00000023087Noct9995.278ENSRROG00000032107-10089.559Rhinopithecus_roxellana
ENSMUSG00000023087Noct10085.479ENSRROG00000043125-9484.865Rhinopithecus_roxellana
ENSMUSG00000023087Noct10095.068ENSSBOG00000022743NOCT9794.865Saimiri_boliviensis_boliviensis
ENSMUSG00000023087Noct10090.959ENSSHAG00000004440NOCT9390.984Sarcophilus_harrisii
ENSMUSG00000023087Noct10067.030ENSSFOG00015024047NOCT9367.027Scleropages_formosus
ENSMUSG00000023087Noct9864.444ENSSFOG00015019938noctb9964.228Scleropages_formosus
ENSMUSG00000023087Noct9960.158ENSSMAG00000015100nocta9854.923Scophthalmus_maximus
ENSMUSG00000023087Noct9960.000ENSSMAG00000012233noctb8959.786Scophthalmus_maximus
ENSMUSG00000023087Noct9962.432ENSSDUG00000019799noctb9962.432Seriola_dumerili
ENSMUSG00000023087Noct10064.191ENSSDUG00000000870nocta9958.166Seriola_dumerili
ENSMUSG00000023087Noct9960.104ENSSLDG00000008012noctb9759.591Seriola_lalandi_dorsalis
ENSMUSG00000023087Noct10063.926ENSSLDG00000007584nocta9957.942Seriola_lalandi_dorsalis
ENSMUSG00000023087Noct9966.759ENSSARG00000008892NOCT9966.759Sorex_araneus
ENSMUSG00000023087Noct10083.836ENSSPUG00000008160NOCT9383.514Sphenodon_punctatus
ENSMUSG00000023087Noct9863.441ENSSPAG00000023537nocta8762.895Stegastes_partitus
ENSMUSG00000023087Noct9962.703ENSSPAG00000010999noctb9962.703Stegastes_partitus
ENSMUSG00000023087Noct9993.611ENSSSCG00000024596NOCT9993.611Sus_scrofa
ENSMUSG00000023087Noct10082.740ENSTGUG00000002465-10082.385Taeniopygia_guttata
ENSMUSG00000023087Noct10082.466ENSTGUG00000014883-10082.337Taeniopygia_guttata
ENSMUSG00000023087Noct9858.289ENSTRUG00000014977noctb10058.289Takifugu_rubripes
ENSMUSG00000023087Noct9962.400ENSTRUG00000004981nocta9162.042Takifugu_rubripes
ENSMUSG00000023087Noct8961.656ENSTNIG00000012346noctb9861.656Tetraodon_nigroviridis
ENSMUSG00000023087Noct9960.800ENSTNIG00000014249nocta10060.260Tetraodon_nigroviridis
ENSMUSG00000023087Noct7696.390ENSTBEG00000009092NOCT7596.390Tupaia_belangeri
ENSMUSG00000023087Noct6194.891ENSTTRG00000013558NOCT6094.891Tursiops_truncatus
ENSMUSG00000023087Noct9993.889ENSUAMG00000011467NOCT9989.906Ursus_americanus
ENSMUSG00000023087Noct9993.889ENSUMAG00000014943NOCT9893.889Ursus_maritimus
ENSMUSG00000023087Noct10091.803ENSVPAG00000003667NOCT10086.111Vicugna_pacos
ENSMUSG00000023087Noct10094.795ENSVVUG00000021461NOCT10094.795Vulpes_vulpes
ENSMUSG00000023087Noct10076.503ENSXETG00000016899noct8176.550Xenopus_tropicalis
ENSMUSG00000023087Noct10063.904ENSXCOG00000013730nocta8763.904Xiphophorus_couchianus
ENSMUSG00000023087Noct9960.705ENSXCOG00000012036noctb9961.186Xiphophorus_couchianus
ENSMUSG00000023087Noct10063.200ENSXMAG00000029143NOCT8963.200Xiphophorus_maculatus
ENSMUSG00000023087Noct9958.594ENSXMAG00000017762noctb9958.854Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000290deadenylation-dependent decapping of nuclear-transcribed mRNA18625844.IGIProcess
GO:0000932P-body18625844.IDAComponent
GO:0003723RNA binding-IEAFunction
GO:0003729mRNA binding20685873.IDAFunction
GO:0004518nuclease activity-IEAFunction
GO:0004527exonuclease activity-IEAFunction
GO:0004535poly(A)-specific ribonuclease activity17400819.IDAFunction
GO:0004535poly(A)-specific ribonuclease activity22073225.IMPFunction
GO:0005515protein binding18625844.20498072.IPIFunction
GO:0005634nucleus23449310.IDAComponent
GO:0005737cytoplasm20498072.23449310.IDAComponent
GO:0006397mRNA processing-IEAProcess
GO:0007623circadian rhythm-IEAProcess
GO:0007623circadian rhythm20685873.22073225.IEPProcess
GO:0009991response to extracellular stimulus17400819.IDAProcess
GO:0010629negative regulation of gene expression20685873.IMPProcess
GO:0016787hydrolase activity-IEAFunction
GO:0032496response to lipopolysaccharide22073225.IDAProcess
GO:0032922circadian regulation of gene expression20685873.IMPProcess
GO:0033962cytoplasmic mRNA processing body assembly18625844.IGIProcess
GO:0042752regulation of circadian rhythm22073225.IMPProcess
GO:0045600positive regulation of fat cell differentiation20498072.IMPProcess
GO:0045668negative regulation of osteoblast differentiation20498072.IMPProcess
GO:0045995regulation of embryonic development23449310.IMPProcess
GO:0046872metal ion binding-IEAFunction
GO:0048255mRNA stabilization22073225.IMPProcess
GO:0048471perinuclear region of cytoplasm20498072.IDAComponent
GO:0048511rhythmic process-IEAProcess

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