EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000139716	-	308	-	-	- (aa)	-	-
ENSMUST00000149610	-	802	-	ENSMUSP00000125292	167 (aa)	-	H7BXC3
ENSMUST00000133251	-	486	-	-	- (aa)	-	-
ENSMUST00000204602	-	691	-	-	- (aa)	-	-
ENSMUST00000154883	-	1552	-	-	- (aa)	-	-
ENSMUST00000172132	-	1607	-	ENSMUSP00000130858	299 (aa)	-	P17751

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00010	Glycolysis / Gluconeogenesis	KEGG
mmu00051	Fructose and mannose metabolism	KEGG
mmu00562	Inositol phosphate metabolism	KEGG
mmu01100	Metabolic pathways	KEGG
mmu01200	Carbon metabolism	KEGG
mmu01230	Biosynthesis of amino acids	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000023456	Tpi1	100	64.671	WBGene00006601	tpi-1	99	61.789	Caenorhabditis_elegans
ENSMUSG00000023456	Tpi1	100	69.461	FBgn0086355	Tpi	99	63.821	Drosophila_melanogaster
ENSMUSG00000023456	Tpi1	100	97.605	ENSG00000111669	TPI1	100	98.230	Homo_sapiens
ENSMUSG00000023456	Tpi1	99	56.024	YDR050C		99	52.439	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003824	catalytic activity	-	IEA	Function
GO:0004807	triose-phosphate isomerase activity	21873635.	IBA	Function
GO:0004807	triose-phosphate isomerase activity	204065.566476.2693209.8417789.15155459.17023274.	IDA	Function
GO:0004807	triose-phosphate isomerase activity	3796661.	IMP	Function
GO:0004807	triose-phosphate isomerase activity	-	ISO	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0006006	glucose metabolic process	2693209.	IDA	Process
GO:0006094	gluconeogenesis	21873635.	IBA	Process
GO:0006096	glycolytic process	21873635.	IBA	Process
GO:0006096	glycolytic process	15155459.	IC	Process
GO:0007275	multicellular organism development	3796661.	IMP	Process
GO:0008929	methylglyoxal synthase activity	-	IEA	Function
GO:0016829	lyase activity	-	IEA	Function
GO:0016853	isomerase activity	566475.	IDA	Function
GO:0019563	glycerol catabolic process	21873635.	IBA	Process
GO:0019682	glyceraldehyde-3-phosphate metabolic process	15155459.	IDA	Process
GO:0031625	ubiquitin protein ligase binding	-	ISO	Function
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0046166	glyceraldehyde-3-phosphate biosynthetic process	21873635.	IBA	Process
GO:0046166	glyceraldehyde-3-phosphate biosynthetic process	-	ISO	Process