EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000023852 (Gene tree)
Gene ID: 12648
Gene Symbol: Chd1
Alias: 4930525N21Rik
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 67644 bases
Position: chr17:15704967-15772610
Accession: 88393
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000134091	ResIII	PF04851.15	1.2e-07	1	1
ENSMUSP00000024627	ResIII	PF04851.15	7.7e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000173159	-	1372	-	-	- (aa)	-	-
ENSMUST00000173311	-	4211	-	ENSMUSP00000134091	1081 (aa)	-	Q8C7Q2
ENSMUST00000174461	-	1812	-	ENSMUSP00000134718	516 (aa)	-	G3V014
ENSMUST00000173040	-	660	-	ENSMUSP00000133406	164 (aa)	-	G3UWS6
ENSMUST00000024627	-	7916	-	ENSMUSP00000024627	1711 (aa)	-	P40201

Gene Model

Click here to download ENSMUSG00000023852's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000023852's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000023852	Chd1	87	34.635	ENSMUSG00000057133	Chd6	63	37.741
ENSMUSG00000023852	Chd1	96	64.872	ENSMUSG00000078671	Chd2	88	60.875
ENSMUSG00000023852	Chd1	78	36.626	ENSMUSG00000056608	Chd9	75	39.515
ENSMUSG00000023852	Chd1	50	44.322	ENSMUSG00000031099	Smarca1	72	42.708

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000023852	Chd1	99	97.037	ENSG00000153922	CHD1	100	95.738	Homo_sapiens
ENSMUSG00000023852	Chd1	73	86.792	ENSAPOG00000005764	chd1	96	83.172	Acanthochromis_polyacanthus
ENSMUSG00000023852	Chd1	88	76.436	ENSAOCG00000023105	chd1	92	77.637	Amphiprion_ocellaris
ENSMUSG00000023852	Chd1	88	77.626	ENSAPEG00000013544	chd1	92	78.853	Amphiprion_percula
ENSMUSG00000023852	Chd1	81	84.422	ENSAMXG00000010843	chd1	91	83.600	Astyanax_mexicanus
ENSMUSG00000023852	Chd1	99	97.135	ENSCATG00000032035	CHD1	100	94.577	Cercocebus_atys
ENSMUSG00000023852	Chd1	99	97.135	ENSCSAG00000015339	CHD1	100	94.519	Chlorocebus_sabaeus
ENSMUSG00000023852	Chd1	100	93.932	ENSCANG00000036916	CHD1	100	93.932	Colobus_angolensis_palliatus
ENSMUSG00000023852	Chd1	100	96.902	ENSCGRG00001023943	Chd1	100	96.902	Cricetulus_griseus_chok1gshd
ENSMUSG00000023852	Chd1	100	96.902	ENSCGRG00000008652	Chd1	100	96.902	Cricetulus_griseus_crigri
ENSMUSG00000023852	Chd1	85	81.046	ENSCSEG00000009553	chd1	92	77.011	Cynoglossus_semilaevis
ENSMUSG00000023852	Chd1	97	97.254	ENSEASG00005016110	CHD1	96	94.904	Equus_asinus_asinus
ENSMUSG00000023852	Chd1	89	77.972	ENSELUG00000017677	chd1	93	77.634	Esox_lucius
ENSMUSG00000023852	Chd1	82	83.597	ENSFHEG00000021164	chd1	89	80.571	Fundulus_heteroclitus
ENSMUSG00000023852	Chd1	96	77.392	ENSGMOG00000001537	chd1	100	65.584	Gadus_morhua
ENSMUSG00000023852	Chd1	92	88.464	ENSGALG00000031327	-	96	88.591	Gallus_gallus
ENSMUSG00000023852	Chd1	91	88.136	ENSGAFG00000019880	chd1	95	82.870	Gambusia_affinis
ENSMUSG00000023852	Chd1	98	97.180	ENSGGOG00000011463	CHD1	99	92.172	Gorilla_gorilla
ENSMUSG00000023852	Chd1	88	78.477	ENSHCOG00000014222	chd1	91	78.849	Hippocampus_comes
ENSMUSG00000023852	Chd1	87	81.313	ENSIPUG00000001369	chd1	92	80.911	Ictalurus_punctatus
ENSMUSG00000023852	Chd1	94	94.576	ENSLAFG00000023183	CHD1	99	93.190	Loxodonta_africana
ENSMUSG00000023852	Chd1	99	97.135	ENSMFAG00000031226	CHD1	100	94.519	Macaca_fascicularis
ENSMUSG00000023852	Chd1	99	97.043	ENSMMUG00000014090	CHD1	99	96.132	Macaca_mulatta
ENSMUSG00000023852	Chd1	99	97.045	ENSMNEG00000045073	CHD1	100	94.406	Macaca_nemestrina
ENSMUSG00000023852	Chd1	96	91.368	ENSMLEG00000041096	CHD1	97	90.334	Mandrillus_leucophaeus
ENSMUSG00000023852	Chd1	78	86.557	ENSMZEG00005010957	chd1	89	83.319	Maylandia_zebra
ENSMUSG00000023852	Chd1	72	68.638	ENSMGAG00000008369	-	100	67.263	Meleagris_gallopavo
ENSMUSG00000023852	Chd1	99	97.124	ENSMOCG00000019121	Chd1	100	94.097	Microtus_ochrogaster
ENSMUSG00000023852	Chd1	70	95.132	ENSMODG00000019266	-	100	94.868	Monodelphis_domestica
ENSMUSG00000023852	Chd1	93	78.844	ENSMALG00000013317	chd1	95	77.493	Monopterus_albus
ENSMUSG00000023852	Chd1	100	99.357	MGP_CAROLIEiJ_G0021099	Chd1	100	99.357	Mus_caroli
ENSMUSG00000023852	Chd1	100	99.260	MGP_PahariEiJ_G0023414	Chd1	100	99.260	Mus_pahari
ENSMUSG00000023852	Chd1	87	77.273	ENSNBRG00000006860	chd1	91	77.473	Neolamprologus_brichardi
ENSMUSG00000023852	Chd1	98	97.084	ENSNLEG00000014493	CHD1	99	93.037	Nomascus_leucogenys
ENSMUSG00000023852	Chd1	99	92.784	ENSOANG00000004891	CHD1	100	92.910	Ornithorhynchus_anatinus
ENSMUSG00000023852	Chd1	94	76.673	ENSORLG00015016725	chd1	93	77.988	Oryzias_latipes_hsok
ENSMUSG00000023852	Chd1	100	92.733	ENSPPAG00000043367	CHD1	100	91.977	Pan_paniscus
ENSMUSG00000023852	Chd1	99	97.130	ENSPTRG00000017103	CHD1	100	94.629	Pan_troglodytes
ENSMUSG00000023852	Chd1	99	97.135	ENSPANG00000006387	CHD1	100	94.519	Papio_anubis
ENSMUSG00000023852	Chd1	91	78.107	ENSPKIG00000024719	chd1	94	78.464	Paramormyrops_kingsleyae
ENSMUSG00000023852	Chd1	84	83.223	ENSPMGG00000005785	chd1	93	80.819	Periophthalmus_magnuspinnatus
ENSMUSG00000023852	Chd1	100	97.021	ENSPEMG00000015939	Chd1	100	97.021	Peromyscus_maniculatus_bairdii
ENSMUSG00000023852	Chd1	78	76.095	ENSPLAG00000006473	-	85	76.841	Poecilia_latipinna
ENSMUSG00000023852	Chd1	94	78.051	ENSPREG00000004209	chd1	97	73.725	Poecilia_reticulata
ENSMUSG00000023852	Chd1	99	98.052	ENSRNOG00000014434	Chd1	99	97.953	Rattus_norvegicus
ENSMUSG00000023852	Chd1	99	97.043	ENSRBIG00000044325	CHD1	100	92.303	Rhinopithecus_bieti
ENSMUSG00000023852	Chd1	99	97.043	ENSRROG00000001726	CHD1	100	94.461	Rhinopithecus_roxellana
ENSMUSG00000023852	Chd1	82	84.294	ENSSFOG00015007161	chd1	90	82.276	Scleropages_formosus
ENSMUSG00000023852	Chd1	93	78.705	ENSSDUG00000018314	chd1	94	78.146	Seriola_dumerili
ENSMUSG00000023852	Chd1	81	84.169	ENSSLDG00000017244	chd1	84	86.019	Seriola_lalandi_dorsalis
ENSMUSG00000023852	Chd1	93	78.325	ENSSPAG00000007024	chd1	95	77.835	Stegastes_partitus
ENSMUSG00000023852	Chd1	99	96.942	ENSSSCG00000014177	CHD1	100	96.547	Sus_scrofa
ENSMUSG00000023852	Chd1	100	71.644	ENSTRUG00000010282	chd1	100	73.195	Takifugu_rubripes
ENSMUSG00000023852	Chd1	94	77.690	ENSTNIG00000007101	chd1	100	78.594	Tetraodon_nigroviridis
ENSMUSG00000023852	Chd1	94	77.953	ENSXCOG00000017184	chd1	97	71.455	Xiphophorus_couchianus
ENSMUSG00000023852	Chd1	94	77.854	ENSXMAG00000014538	chd1	95	78.041	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0001650	fibrillar center	-	ISO	Component
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	8460153.	NAS	Function
GO:0004386	helicase activity	8460153.	NAS	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005634	nucleus	8460153.	NAS	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0006333	chromatin assembly or disassembly	8460153.	NAS	Process
GO:0006338	chromatin remodeling	16415155.	IGI	Process
GO:0016569	covalent chromatin modification	-	ISO	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0035064	methylated histone binding	-	ISO	Function
GO:0043923	positive regulation by host of viral transcription	-	ISO	Process