EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000023971 (Gene tree)
Gene ID: 224823
Gene Symbol: Rrp36
Alias: BC011248
Full Name: ribosomal RNA processing 36 homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 8029 bases
Position: chr17:46666324-46674352
Accession: 2385053
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000024766	RRP36	PF06102.12	1.5e-47	1	1
ENSMUSP00000156646	RRP36	PF06102.12	1.8e-47	1	1
ENSMUSP00000156793	RRP36	PF06102.12	1e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000233155	-	2274	-	-	- (aa)	-	-
ENSMUST00000233247	-	406	-	-	- (aa)	-	-
ENSMUST00000232697	-	537	-	ENSMUSP00000156793	179 (aa)	-	-
ENSMUST00000233136	-	1289	-	ENSMUSP00000156646	244 (aa)	-	UPI0000D8B492
ENSMUST00000024766	-	1195	XM_006524144	ENSMUSP00000024766	226 (aa)	XP_006524207	A0A0R4J045

Gene Model

Click here to download ENSMUSG00000023971's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000023971's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000023971	Rrp36	100	84.279	ENSG00000124541	RRP36	92	81.481	Homo_sapiens
ENSMUSG00000023971	Rrp36	92	52.404	ENSAPOG00000022015	rrp36	75	51.442	Acanthochromis_polyacanthus
ENSMUSG00000023971	Rrp36	97	49.776	ENSACIG00000020578	-	71	45.175	Amphilophus_citrinellus
ENSMUSG00000023971	Rrp36	96	52.995	ENSAOCG00000013439	rrp36	71	50.431	Amphiprion_ocellaris
ENSMUSG00000023971	Rrp36	96	52.995	ENSAPEG00000020996	rrp36	71	50.431	Amphiprion_percula
ENSMUSG00000023971	Rrp36	96	50.691	ENSATEG00000016946	rrp36	68	48.927	Anabas_testudineus
ENSMUSG00000023971	Rrp36	100	83.406	ENSANAG00000021773	RRP36	95	79.675	Aotus_nancymaae
ENSMUSG00000023971	Rrp36	96	43.056	ENSACLG00000008408	rrp36	91	43.056	Astatotilapia_calliptera
ENSMUSG00000023971	Rrp36	92	42.995	ENSACLG00000013982	RRP36	85	43.062	Astatotilapia_calliptera
ENSMUSG00000023971	Rrp36	99	84.649	ENSBTAG00000053873	RRP36	100	81.377	Bos_taurus
ENSMUSG00000023971	Rrp36	94	87.442	ENSCJAG00000004943	RRP36	84	87.442	Callithrix_jacchus
ENSMUSG00000023971	Rrp36	99	83.186	ENSCAFG00020011057	RRP36	93	85.253	Canis_lupus_dingo
ENSMUSG00000023971	Rrp36	95	86.175	ENSCHIG00000016354	-	100	77.470	Capra_hircus
ENSMUSG00000023971	Rrp36	86	87.310	ENSCHIG00000003210	-	88	87.310	Capra_hircus
ENSMUSG00000023971	Rrp36	100	60.324	ENSCHIG00000019781	-	100	60.324	Capra_hircus
ENSMUSG00000023971	Rrp36	99	79.661	ENSTSYG00000037176	RRP36	98	77.510	Carlito_syrichta
ENSMUSG00000023971	Rrp36	92	83.810	ENSCAPG00000010983	RRP36	91	83.810	Cavia_aperea
ENSMUSG00000023971	Rrp36	99	80.357	ENSCPOG00000025932	RRP36	99	80.357	Cavia_porcellus
ENSMUSG00000023971	Rrp36	100	83.843	ENSCCAG00000000048	RRP36	95	80.081	Cebus_capucinus
ENSMUSG00000023971	Rrp36	100	83.406	ENSCATG00000041903	RRP36	94	80.162	Cercocebus_atys
ENSMUSG00000023971	Rrp36	100	82.533	ENSCLAG00000013166	RRP36	100	82.533	Chinchilla_lanigera
ENSMUSG00000023971	Rrp36	100	84.279	ENSCSAG00000011553	RRP36	96	79.920	Chlorocebus_sabaeus
ENSMUSG00000023971	Rrp36	95	56.881	ENSCPBG00000003555	RRP36	59	56.881	Chrysemys_picta_bellii
ENSMUSG00000023971	Rrp36	95	36.199	ENSCING00000012193	-	86	36.199	Ciona_intestinalis
ENSMUSG00000023971	Rrp36	82	37.500	ENSCSAVG00000002672	-	84	37.500	Ciona_savignyi
ENSMUSG00000023971	Rrp36	94	87.907	ENSCANG00000035127	RRP36	85	87.907	Colobus_angolensis_palliatus
ENSMUSG00000023971	Rrp36	100	87.611	ENSCGRG00001021461	Rrp36	100	87.611	Cricetulus_griseus_chok1gshd
ENSMUSG00000023971	Rrp36	100	87.611	ENSCGRG00000006286	Rrp36	100	87.611	Cricetulus_griseus_crigri
ENSMUSG00000023971	Rrp36	96	51.598	ENSCSEG00000001039	RRP36	67	51.598	Cynoglossus_semilaevis
ENSMUSG00000023971	Rrp36	93	46.698	ENSCVAG00000017798	rrp36	93	47.170	Cyprinodon_variegatus
ENSMUSG00000023971	Rrp36	98	48.198	ENSDARG00000032516	rrp36	72	46.639	Danio_rerio
ENSMUSG00000023971	Rrp36	100	80.088	ENSDORG00000012186	Rrp36	97	80.088	Dipodomys_ordii
ENSMUSG00000023971	Rrp36	96	33.772	FBgn0038235	CG8461	99	32.661	Drosophila_melanogaster
ENSMUSG00000023971	Rrp36	99	85.088	ENSEASG00005003169	RRP36	99	85.088	Equus_asinus_asinus
ENSMUSG00000023971	Rrp36	99	84.649	ENSECAG00000040238	RRP36	99	84.649	Equus_caballus
ENSMUSG00000023971	Rrp36	99	66.667	ENSEEUG00000010515	RRP36	96	63.673	Erinaceus_europaeus
ENSMUSG00000023971	Rrp36	99	49.333	ENSELUG00000016840	rrp36	62	49.554	Esox_lucius
ENSMUSG00000023971	Rrp36	99	82.969	ENSFCAG00000043818	RRP36	92	82.328	Felis_catus
ENSMUSG00000023971	Rrp36	93	85.514	ENSFDAG00000010380	RRP36	99	85.514	Fukomys_damarensis
ENSMUSG00000023971	Rrp36	82	48.663	ENSFHEG00000000761	rrp36	94	48.663	Fundulus_heteroclitus
ENSMUSG00000023971	Rrp36	97	47.556	ENSGAFG00000017817	rrp36	67	45.228	Gambusia_affinis
ENSMUSG00000023971	Rrp36	97	50.450	ENSGACG00000019603	RRP36	70	50.000	Gasterosteus_aculeatus
ENSMUSG00000023971	Rrp36	100	84.279	ENSGGOG00000037384	RRP36	94	81.481	Gorilla_gorilla
ENSMUSG00000023971	Rrp36	96	47.465	ENSHBUG00000008974	RRP36	71	45.652	Haplochromis_burtoni
ENSMUSG00000023971	Rrp36	95	83.410	ENSHGLG00000018082	RRP36	85	83.410	Heterocephalus_glaber_female
ENSMUSG00000023971	Rrp36	95	83.410	ENSHGLG00100019303	RRP36	85	83.410	Heterocephalus_glaber_male
ENSMUSG00000023971	Rrp36	92	36.667	ENSHCOG00000010303	rrp36	81	37.850	Hippocampus_comes
ENSMUSG00000023971	Rrp36	92	46.411	ENSIPUG00000016548	rrp36	70	46.411	Ictalurus_punctatus
ENSMUSG00000023971	Rrp36	100	81.659	ENSSTOG00000009511	RRP36	99	80.851	Ictidomys_tridecemlineatus
ENSMUSG00000023971	Rrp36	99	81.614	ENSJJAG00000023363	Rrp36	99	81.614	Jaculus_jaculus
ENSMUSG00000023971	Rrp36	97	49.774	ENSKMAG00000006968	rrp36	74	44.402	Kryptolebias_marmoratus
ENSMUSG00000023971	Rrp36	97	44.622	ENSLBEG00000017728	-	70	44.402	Labrus_bergylta
ENSMUSG00000023971	Rrp36	92	54.327	ENSLACG00000001888	rrp36	65	54.327	Latimeria_chalumnae
ENSMUSG00000023971	Rrp36	98	50.901	ENSLOCG00000015862	RRP36	63	50.901	Lepisosteus_oculatus
ENSMUSG00000023971	Rrp36	94	82.791	ENSLAFG00000032704	RRP36	100	82.791	Loxodonta_africana
ENSMUSG00000023971	Rrp36	100	84.279	ENSMFAG00000003547	RRP36	93	81.557	Macaca_fascicularis
ENSMUSG00000023971	Rrp36	100	83.843	ENSMNEG00000044747	RRP36	93	81.148	Macaca_nemestrina
ENSMUSG00000023971	Rrp36	100	83.843	ENSMLEG00000034272	RRP36	93	81.148	Mandrillus_leucophaeus
ENSMUSG00000023971	Rrp36	96	50.230	ENSMAMG00000019157	-	59	50.230	Mastacembelus_armatus
ENSMUSG00000023971	Rrp36	96	47.465	ENSMZEG00005015204	RRP36	70	45.217	Maylandia_zebra
ENSMUSG00000023971	Rrp36	98	86.878	ENSMAUG00000003648	Rrp36	97	86.878	Mesocricetus_auratus
ENSMUSG00000023971	Rrp36	100	81.223	ENSMICG00000045230	RRP36	96	77.869	Microcebus_murinus
ENSMUSG00000023971	Rrp36	99	86.161	ENSMOCG00000002009	Rrp36	99	83.884	Microtus_ochrogaster
ENSMUSG00000023971	Rrp36	96	47.706	ENSMMOG00000018637	-	72	44.398	Mola_mola
ENSMUSG00000023971	Rrp36	62	59.441	ENSMODG00000029304	-	82	60.000	Monodelphis_domestica
ENSMUSG00000023971	Rrp36	96	50.228	ENSMALG00000008142	-	69	49.315	Monopterus_albus
ENSMUSG00000023971	Rrp36	100	95.575	MGP_CAROLIEiJ_G0021680	Rrp36	100	94.672	Mus_caroli
ENSMUSG00000023971	Rrp36	100	95.595	MGP_PahariEiJ_G0020671	Rrp36	100	95.595	Mus_pahari
ENSMUSG00000023971	Rrp36	100	98.770	MGP_SPRETEiJ_G0022592	Rrp36	100	98.770	Mus_spretus
ENSMUSG00000023971	Rrp36	54	77.686	ENSNGAG00000021177	-	85	77.600	Nannospalax_galili
ENSMUSG00000023971	Rrp36	94	87.907	ENSNLEG00000033289	RRP36	100	87.907	Nomascus_leucogenys
ENSMUSG00000023971	Rrp36	73	66.061	ENSMEUG00000007149	-	99	65.455	Notamacropus_eugenii
ENSMUSG00000023971	Rrp36	86	84.264	ENSOPRG00000002274	RRP36	80	84.264	Ochotona_princeps
ENSMUSG00000023971	Rrp36	100	78.166	ENSODEG00000015915	RRP36	100	78.166	Octodon_degus
ENSMUSG00000023971	Rrp36	96	49.309	ENSONIG00000015983	rrp36	76	45.607	Oreochromis_niloticus
ENSMUSG00000023971	Rrp36	96	48.611	ENSORLG00000029500	rrp36	66	48.899	Oryzias_latipes
ENSMUSG00000023971	Rrp36	96	49.315	ENSORLG00020017452	-	66	49.123	Oryzias_latipes_hni
ENSMUSG00000023971	Rrp36	96	49.315	ENSORLG00015016898	rrp36	70	46.667	Oryzias_latipes_hsok
ENSMUSG00000023971	Rrp36	96	50.926	ENSOMEG00000008623	RRP36	67	50.446	Oryzias_melastigma
ENSMUSG00000023971	Rrp36	100	79.039	ENSOGAG00000012699	RRP36	99	79.039	Otolemur_garnettii
ENSMUSG00000023971	Rrp36	100	70.742	ENSPPAG00000042831	-	92	70.000	Pan_paniscus
ENSMUSG00000023971	Rrp36	99	84.279	ENSPPRG00000014610	RRP36	92	83.621	Panthera_pardus
ENSMUSG00000023971	Rrp36	99	84.279	ENSPTIG00000010853	RRP36	92	83.621	Panthera_tigris_altaica
ENSMUSG00000023971	Rrp36	100	84.716	ENSPTRG00000018184	RRP36	92	81.893	Pan_troglodytes
ENSMUSG00000023971	Rrp36	100	84.279	ENSPANG00000025140	RRP36	93	81.557	Papio_anubis
ENSMUSG00000023971	Rrp36	94	50.235	ENSPKIG00000004303	rrp36	63	50.235	Paramormyrops_kingsleyae
ENSMUSG00000023971	Rrp36	93	45.283	ENSPMGG00000016870	rrp36	66	45.283	Periophthalmus_magnuspinnatus
ENSMUSG00000023971	Rrp36	100	87.611	ENSPEMG00000007015	Rrp36	100	87.611	Peromyscus_maniculatus_bairdii
ENSMUSG00000023971	Rrp36	98	69.469	ENSPCIG00000009179	RRP36	100	65.873	Phascolarctos_cinereus
ENSMUSG00000023971	Rrp36	98	48.000	ENSPFOG00000011959	rrp36	57	48.000	Poecilia_formosa
ENSMUSG00000023971	Rrp36	98	47.556	ENSPLAG00000023901	rrp36	65	46.581	Poecilia_latipinna
ENSMUSG00000023971	Rrp36	98	48.000	ENSPMEG00000024099	rrp36	62	48.000	Poecilia_mexicana
ENSMUSG00000023971	Rrp36	96	48.858	ENSPREG00000022787	rrp36	65	47.639	Poecilia_reticulata
ENSMUSG00000023971	Rrp36	94	87.442	ENSPPYG00000016628	RRP36	95	79.268	Pongo_abelii
ENSMUSG00000023971	Rrp36	99	80.263	ENSPCOG00000018401	RRP36	100	76.000	Propithecus_coquereli
ENSMUSG00000023971	Rrp36	99	83.333	ENSPVAG00000008714	RRP36	100	79.757	Pteropus_vampyrus
ENSMUSG00000023971	Rrp36	96	47.465	ENSPNYG00000018030	RRP36	71	45.217	Pundamilia_nyererei
ENSMUSG00000023971	Rrp36	96	51.389	ENSPNAG00000027207	rrp36	60	51.389	Pygocentrus_nattereri
ENSMUSG00000023971	Rrp36	99	89.732	ENSRNOG00000017836	Rrp36	100	87.295	Rattus_norvegicus
ENSMUSG00000023971	Rrp36	100	84.279	ENSRBIG00000040019	RRP36	93	81.481	Rhinopithecus_bieti
ENSMUSG00000023971	Rrp36	100	83.843	ENSRROG00000040721	RRP36	93	81.070	Rhinopithecus_roxellana
ENSMUSG00000023971	Rrp36	71	30.769	YOR287C	-	56	30.270	Saccharomyces_cerevisiae
ENSMUSG00000023971	Rrp36	100	81.659	ENSSBOG00000030228	RRP36	96	79.012	Saimiri_boliviensis_boliviensis
ENSMUSG00000023971	Rrp36	96	47.248	ENSSFOG00015023058	rrp36	65	47.248	Scleropages_formosus
ENSMUSG00000023971	Rrp36	97	51.786	ENSSMAG00000020911	-	61	51.339	Scophthalmus_maximus
ENSMUSG00000023971	Rrp36	96	52.535	ENSSDUG00000018924	rrp36	63	50.435	Seriola_dumerili
ENSMUSG00000023971	Rrp36	91	52.913	ENSSLDG00000019741	RRP36	96	51.456	Seriola_lalandi_dorsalis
ENSMUSG00000023971	Rrp36	94	81.690	ENSSARG00000000873	RRP36	99	81.690	Sorex_araneus
ENSMUSG00000023971	Rrp36	96	57.143	ENSSPUG00000000213	RRP36	60	57.143	Sphenodon_punctatus
ENSMUSG00000023971	Rrp36	92	53.774	ENSSPAG00000017154	rrp36	74	48.585	Stegastes_partitus
ENSMUSG00000023971	Rrp36	99	85.398	ENSSSCG00000001656	RRP36	98	80.972	Sus_scrofa
ENSMUSG00000023971	Rrp36	94	60.920	ENSSSCG00000037862	-	95	58.065	Sus_scrofa
ENSMUSG00000023971	Rrp36	96	44.444	ENSTRUG00000021893	rrp36	66	44.444	Takifugu_rubripes
ENSMUSG00000023971	Rrp36	95	45.495	ENSTNIG00000004741	rrp36	98	41.129	Tetraodon_nigroviridis
ENSMUSG00000023971	Rrp36	94	73.953	ENSTBEG00000012326	RRP36	100	73.953	Tupaia_belangeri
ENSMUSG00000023971	Rrp36	94	83.721	ENSTTRG00000007001	RRP36	100	76.518	Tursiops_truncatus
ENSMUSG00000023971	Rrp36	99	82.819	ENSUAMG00000015865	RRP36	98	80.165	Ursus_americanus
ENSMUSG00000023971	Rrp36	72	92.638	ENSUMAG00000008726	RRP36	100	92.638	Ursus_maritimus
ENSMUSG00000023971	Rrp36	94	87.442	ENSVPAG00000008904	RRP36	100	87.442	Vicugna_pacos
ENSMUSG00000023971	Rrp36	99	82.743	ENSVVUG00000027816	RRP36	93	84.793	Vulpes_vulpes
ENSMUSG00000023971	Rrp36	98	46.875	ENSXCOG00000011238	rrp36	90	44.762	Xiphophorus_couchianus
ENSMUSG00000023971	Rrp36	96	47.248	ENSXMAG00000013804	rrp36	50	42.784	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0000469	cleavage involved in rRNA processing	-	IEA	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006364	rRNA processing	-	ISO	Process
GO:0030686	90S preribosome	21873635.	IBA	Component
GO:0042254	ribosome biogenesis	-	IEA	Process
GO:0042274	ribosomal small subunit biogenesis	-	ISO	Process