EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000147111	-	871	-	-	- (aa)	-	-
ENSMUST00000183046	-	820	-	-	- (aa)	-	-
ENSMUST00000138193	-	1485	-	-	- (aa)	-	-
ENSMUST00000136071	-	411	-	-	- (aa)	-	-
ENSMUST00000232914	-	680	-	-	- (aa)	-	-
ENSMUST00000182107	-	4107	-	-	- (aa)	-	-
ENSMUST00000127430	-	7052	XM_006525030	ENSMUSP00000121835	2007 (aa)	XP_006525093	Q6P5D8
ENSMUST00000233839	-	595	-	ENSMUSP00000156815	119 (aa)	-	-
ENSMUST00000233872	-	381	-	ENSMUSP00000156880	87 (aa)	-	-
ENSMUST00000182205	-	2510	-	-	- (aa)	-	-
ENSMUST00000182747	-	2790	-	-	- (aa)	-	-
ENSMUST00000182049	-	2497	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000024054	Smchd1	99	87.066	ENSG00000101596	SMCHD1	96	97.872	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000784	nuclear chromosome, telomeric region	-	ISO	Component
GO:0001740	Barr body	18425126.26391951.	IDA	Component
GO:0001740	Barr body	-	ISO	Component
GO:0003677	DNA binding	-	IEA	Function
GO:0005515	protein binding	26391951.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005694	chromosome	-	IEA	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006302	double-strand break repair	-	IEA	Process
GO:0006325	chromatin organization	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0009048	dosage compensation by inactivation of X chromosome	18425126.23754746.	IMP	Process
GO:0009048	dosage compensation by inactivation of X chromosome	-	ISO	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0016887	ATPase activity	26391951.27059856.	IDA	Function
GO:0035861	site of double-strand break	-	ISO	Component
GO:0042803	protein homodimerization activity	26391951.	IDA	Function
GO:0043584	nose development	-	ISO	Process
GO:0045739	positive regulation of DNA repair	-	ISO	Process
GO:0051276	chromosome organization	-	IEA	Process
GO:0060820	inactivation of X chromosome by heterochromatin assembly	23754746.	IMP	Process
GO:0060821	inactivation of X chromosome by DNA methylation	18425126.	IMP	Process
GO:0070868	heterochromatin organization involved in chromatin silencing	23754746.26391951.	IMP	Process
GO:2000042	negative regulation of double-strand break repair via homologous recombination	-	ISO	Process
GO:2001034	positive regulation of double-strand break repair via nonhomologous end joining	-	ISO	Process