EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000024897	-	3369	XM_006524385	ENSMUSP00000024897	249 (aa)	XP_017172989	Q9WV55
ENSMUST00000232686	-	979	-	ENSMUSP00000156845	236 (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04979	Cholesterol metabolism	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000024091	Vapa	100	97.189	ENSG00000101558	VAPA	100	97.189	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000139	Golgi membrane	-	ISO	Component
GO:0005515	protein binding	24251978.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005783	endoplasmic reticulum	10655491.	IDA	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005789	endoplasmic reticulum membrane	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005923	bicellular tight junction	-	ISO	Component
GO:0006888	ER to Golgi vesicle-mediated transport	-	ISO	Process
GO:0008017	microtubule binding	-	ISO	Function
GO:0008219	cell death	-	ISO	Process
GO:0015630	microtubule cytoskeleton	10655491.	IDA	Component
GO:0016020	membrane	-	ISO	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0019904	protein domain specific binding	-	ISO	Function
GO:0030054	cell junction	-	IEA	Component
GO:0031175	neuron projection development	-	ISO	Process
GO:0031965	nuclear membrane	-	ISO	Component
GO:0031982	vesicle	-	ISO	Component
GO:0033149	FFAT motif binding	-	ISO	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0044791	positive regulation by host of viral release from host cell	-	ISO	Process
GO:0044828	negative regulation by host of viral genome replication	-	ISO	Process
GO:0044829	positive regulation by host of viral genome replication	-	ISO	Process
GO:0046982	protein heterodimerization activity	-	ISO	Function
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0070972	protein localization to endoplasmic reticulum	-	ISO	Process
GO:0090114	COPII-coated vesicle budding	-	ISO	Process