EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000024120 (Gene tree)
Gene ID: 72416
Gene Symbol: Lrpprc
Alias: 3110001K13Rik|Lrp130
Full Name: leucine-rich PPR-motif containing
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 85543 bases
Position: chr17:84705247-84790789
Accession: 1919666
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000107927	PPR	PF01535.20	8.8e-23	1	3
ENSMUSP00000107927	PPR	PF01535.20	8.8e-23	2	3
ENSMUSP00000107927	PPR	PF01535.20	8.8e-23	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000162799	-	809	-	-	- (aa)	-	-
ENSMUST00000112308	-	4393	XM_011246643	ENSMUSP00000107927	1392 (aa)	XP_011244945	Q6PB66
ENSMUST00000161928	-	2875	-	-	- (aa)	-	-
ENSMUST00000160011	-	565	-	ENSMUSP00000123795	142 (aa)	-	F6V2A3
ENSMUST00000160414	-	513	-	-	- (aa)	-	-
ENSMUST00000159222	-	967	-	-	- (aa)	-	-
ENSMUST00000161299	-	4012	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000024120's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000024120's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000024120	Lrpprc	100	75.251	ENSG00000138095	LRPPRC	100	75.251	Homo_sapiens
ENSMUSG00000024120	Lrpprc	94	58.099	ENSAPLG00000008902	LRPPRC	99	58.099	Anas_platyrhynchos
ENSMUSG00000024120	Lrpprc	99	77.044	ENSBTAG00000016368	LRPPRC	99	76.884	Bos_taurus
ENSMUSG00000024120	Lrpprc	99	76.454	ENSCAFG00000002527	LRPPRC	99	76.310	Canis_familiaris
ENSMUSG00000024120	Lrpprc	99	75.664	ENSCAFG00020025995	LRPPRC	99	75.520	Canis_lupus_dingo
ENSMUSG00000024120	Lrpprc	96	78.539	ENSTSYG00000013197	LRPPRC	96	78.539	Carlito_syrichta
ENSMUSG00000024120	Lrpprc	100	62.464	ENSCPBG00000005446	LRPPRC	99	65.266	Chrysemys_picta_bellii
ENSMUSG00000024120	Lrpprc	67	32.885	FBgn0284256	bsf	68	32.885	Drosophila_melanogaster
ENSMUSG00000024120	Lrpprc	99	79.053	ENSEASG00005003715	LRPPRC	99	78.910	Equus_asinus_asinus
ENSMUSG00000024120	Lrpprc	99	78.195	ENSECAG00000023814	LRPPRC	96	78.051	Equus_caballus
ENSMUSG00000024120	Lrpprc	96	56.176	ENSGALG00000009967	LRPPRC	99	55.442	Gallus_gallus
ENSMUSG00000024120	Lrpprc	97	63.950	ENSGAGG00000020227	LRPPRC	99	62.837	Gopherus_agassizii
ENSMUSG00000024120	Lrpprc	100	75.536	ENSMLEG00000043673	LRPPRC	100	75.536	Mandrillus_leucophaeus
ENSMUSG00000024120	Lrpprc	96	56.125	ENSMGAG00000010201	LRPPRC	99	56.199	Meleagris_gallopavo
ENSMUSG00000024120	Lrpprc	100	95.546	MGP_CAROLIEiJ_G0021927	Lrpprc	100	95.546	Mus_caroli
ENSMUSG00000024120	Lrpprc	100	93.391	MGP_PahariEiJ_G0020917	Lrpprc	100	93.391	Mus_pahari
ENSMUSG00000024120	Lrpprc	100	98.491	MGP_SPRETEiJ_G0022843	Lrpprc	100	98.491	Mus_spretus
ENSMUSG00000024120	Lrpprc	82	80.000	ENSMEUG00000004430	-	89	80.000	Notamacropus_eugenii
ENSMUSG00000024120	Lrpprc	100	83.908	ENSPEMG00000022720	Lrpprc	100	83.908	Peromyscus_maniculatus_bairdii
ENSMUSG00000024120	Lrpprc	100	66.099	ENSPCIG00000006872	LRPPRC	100	66.098	Phascolarctos_cinereus
ENSMUSG00000024120	Lrpprc	99	76.631	ENSPCOG00000001309	LRPPRC	99	76.542	Propithecus_coquereli
ENSMUSG00000024120	Lrpprc	89	59.936	ENSSPUG00000005188	LRPPRC	99	59.777	Sphenodon_punctatus
ENSMUSG00000024120	Lrpprc	66	75.113	ENSTBEG00000011055	-	66	75.113	Tupaia_belangeri
ENSMUSG00000024120	Lrpprc	100	76.846	ENSUAMG00000022940	LRPPRC	100	76.846	Ursus_americanus
ENSMUSG00000024120	Lrpprc	100	76.918	ENSUMAG00000012801	LRPPRC	100	76.918	Ursus_maritimus
ENSMUSG00000024120	Lrpprc	99	75.305	ENSVVUG00000002339	LRPPRC	99	75.668	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000794	condensed nuclear chromosome	-	ISO	Component
GO:0000961	negative regulation of mitochondrial RNA catabolic process	22045337.	IGI	Process
GO:0000961	negative regulation of mitochondrial RNA catabolic process	21880015.22045337.	IMP	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	12071956.	IDA	Function
GO:0003723	RNA binding	21880015.	IDA	Function
GO:0005515	protein binding	17050673.	IPI	Function
GO:0005634	nucleus	12071956.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	12071956.	IDA	Component
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	21880015.	IC	Component
GO:0005739	mitochondrion	14651853.22045337.	IDA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005856	cytoskeleton	-	ISO	Component
GO:0005874	microtubule	-	ISO	Component
GO:0016020	membrane	-	IEA	Component
GO:0031625	ubiquitin protein ligase binding	-	ISO	Function
GO:0042645	mitochondrial nucleoid	-	ISO	Component
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0048487	beta-tubulin binding	-	ISO	Function
GO:0051028	mRNA transport	-	IEA	Process
GO:0070129	regulation of mitochondrial translation	22045337.	IMP	Process
GO:1990904	ribonucleoprotein complex	22045337.	IDA	Component