EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000024135 (Gene tree)
Gene ID: 78586
Gene Symbol: Srbd1
Alias: D530025C17Rik
Full Name: S1 RNA binding domain 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 160511 bases
Position: chr17:85984665-86145175
Accession: 1925836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000157062	S1	PF00575.23	1.2e-10	1	1
ENSMUSP00000157179	S1	PF00575.23	1.7e-10	1	1
ENSMUSP00000157302	S1	PF00575.23	3.2e-10	1	1
ENSMUSP00000092810	S1	PF00575.23	1.6e-09	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000234595	-	809	-	-	- (aa)	-	-
ENSMUST00000234761	-	1474	-	ENSMUSP00000157302	280 (aa)	-	Q8CHZ0
ENSMUST00000234951	-	795	-	ENSMUSP00000157062	170 (aa)	-	B7ZWI7
ENSMUST00000234682	-	1232	-	ENSMUSP00000157179	195 (aa)	-	B7ZWI4
ENSMUST00000095187	-	3530	XM_011246728	ENSMUSP00000092810	981 (aa)	XP_011245030	F8WGW3
ENSMUST00000234645	-	653	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000024135's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000024135's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000024135	Srbd1	100	81.910	ENSG00000068784	SRBD1	100	81.910	Homo_sapiens
ENSMUSG00000024135	Srbd1	99	55.197	ENSAPOG00000005103	si:ch211-117n7.8	84	56.824	Acanthochromis_polyacanthus
ENSMUSG00000024135	Srbd1	100	82.294	ENSAMEG00000005993	SRBD1	100	82.294	Ailuropoda_melanoleuca
ENSMUSG00000024135	Srbd1	99	55.072	ENSACIG00000009875	si:ch211-117n7.8	91	54.984	Amphilophus_citrinellus
ENSMUSG00000024135	Srbd1	96	56.458	ENSAOCG00000024718	si:ch211-117n7.8	85	56.757	Amphiprion_ocellaris
ENSMUSG00000024135	Srbd1	100	53.873	ENSAPEG00000002645	si:ch211-117n7.8	88	56.789	Amphiprion_percula
ENSMUSG00000024135	Srbd1	98	57.949	ENSATEG00000010844	si:ch211-117n7.8	85	57.227	Anabas_testudineus
ENSMUSG00000024135	Srbd1	99	77.665	ENSAPLG00000006313	SRBD1	100	70.249	Anas_platyrhynchos
ENSMUSG00000024135	Srbd1	99	73.980	ENSACAG00000003811	-	100	75.079	Anolis_carolinensis
ENSMUSG00000024135	Srbd1	99	85.204	ENSANAG00000025573	SRBD1	100	82.111	Aotus_nancymaae
ENSMUSG00000024135	Srbd1	96	56.343	ENSACLG00000024219	si:ch211-117n7.8	92	52.401	Astatotilapia_calliptera
ENSMUSG00000024135	Srbd1	99	58.273	ENSAMXG00000004294	SRBD1	93	56.092	Astyanax_mexicanus
ENSMUSG00000024135	Srbd1	99	82.653	ENSBTAG00000007508	SRBD1	97	81.225	Bos_taurus
ENSMUSG00000024135	Srbd1	100	81.307	ENSCJAG00000000727	SRBD1	100	81.307	Callithrix_jacchus
ENSMUSG00000024135	Srbd1	100	82.648	ENSCAFG00000002554	SRBD1	100	82.648	Canis_familiaris
ENSMUSG00000024135	Srbd1	99	82.653	ENSCAFG00020026284	SRBD1	99	86.534	Canis_lupus_dingo
ENSMUSG00000024135	Srbd1	99	82.653	ENSCHIG00000016535	SRBD1	98	81.124	Capra_hircus
ENSMUSG00000024135	Srbd1	100	82.382	ENSTSYG00000012797	SRBD1	100	82.382	Carlito_syrichta
ENSMUSG00000024135	Srbd1	96	82.979	ENSCAPG00000014166	-	100	82.609	Cavia_aperea
ENSMUSG00000024135	Srbd1	100	83.130	ENSCPOG00000004773	SRBD1	100	83.130	Cavia_porcellus
ENSMUSG00000024135	Srbd1	99	84.694	ENSCCAG00000025589	SRBD1	100	82.312	Cebus_capucinus
ENSMUSG00000024135	Srbd1	99	83.673	ENSCATG00000039530	SRBD1	100	82.513	Cercocebus_atys
ENSMUSG00000024135	Srbd1	100	83.789	ENSCLAG00000008623	SRBD1	100	83.789	Chinchilla_lanigera
ENSMUSG00000024135	Srbd1	99	83.673	ENSCSAG00000013350	SRBD1	100	82.513	Chlorocebus_sabaeus
ENSMUSG00000024135	Srbd1	87	92.157	ENSCHOG00000003805	SRBD1	87	92.157	Choloepus_hoffmanni
ENSMUSG00000024135	Srbd1	95	80.247	ENSCPBG00000005677	SRBD1	99	71.733	Chrysemys_picta_bellii
ENSMUSG00000024135	Srbd1	95	41.155	ENSCING00000005950	-	99	43.710	Ciona_intestinalis
ENSMUSG00000024135	Srbd1	95	38.060	ENSCSAVG00000000861	-	99	43.949	Ciona_savignyi
ENSMUSG00000024135	Srbd1	99	82.653	ENSCANG00000016307	SRBD1	99	82.075	Colobus_angolensis_palliatus
ENSMUSG00000024135	Srbd1	100	88.403	ENSCGRG00001000513	Srbd1	100	88.403	Cricetulus_griseus_chok1gshd
ENSMUSG00000024135	Srbd1	100	88.403	ENSCGRG00000002283	Srbd1	100	88.403	Cricetulus_griseus_crigri
ENSMUSG00000024135	Srbd1	99	54.348	ENSCSEG00000000856	si:ch211-117n7.8	85	56.773	Cynoglossus_semilaevis
ENSMUSG00000024135	Srbd1	99	56.429	ENSCVAG00000020212	si:ch211-117n7.8	98	54.721	Cyprinodon_variegatus
ENSMUSG00000024135	Srbd1	98	55.621	ENSDARG00000079827	srbd1	99	56.051	Danio_rerio
ENSMUSG00000024135	Srbd1	99	82.653	ENSDNOG00000018686	SRBD1	100	81.500	Dasypus_novemcinctus
ENSMUSG00000024135	Srbd1	100	81.809	ENSDORG00000010468	Srbd1	100	81.809	Dipodomys_ordii
ENSMUSG00000024135	Srbd1	96	31.481	FBgn0051156	CG31156	79	37.469	Drosophila_melanogaster
ENSMUSG00000024135	Srbd1	100	72.887	ENSETEG00000000739	SRBD1	92	80.470	Echinops_telfairi
ENSMUSG00000024135	Srbd1	98	45.361	ENSEBUG00000008902	si:ch211-117n7.8	96	48.493	Eptatretus_burgeri
ENSMUSG00000024135	Srbd1	99	84.184	ENSEASG00005003132	SRBD1	97	86.624	Equus_asinus_asinus
ENSMUSG00000024135	Srbd1	100	82.932	ENSECAG00000013865	SRBD1	98	82.932	Equus_caballus
ENSMUSG00000024135	Srbd1	99	60.000	ENSELUG00000012592	si:ch211-117n7.8	82	60.117	Esox_lucius
ENSMUSG00000024135	Srbd1	100	82.530	ENSFCAG00000005101	SRBD1	100	82.530	Felis_catus
ENSMUSG00000024135	Srbd1	97	76.440	ENSFALG00000012966	SRBD1	100	68.085	Ficedula_albicollis
ENSMUSG00000024135	Srbd1	99	83.673	ENSFDAG00000016670	SRBD1	99	83.958	Fukomys_damarensis
ENSMUSG00000024135	Srbd1	100	55.903	ENSFHEG00000019480	si:ch211-117n7.8	82	57.788	Fundulus_heteroclitus
ENSMUSG00000024135	Srbd1	99	53.623	ENSGMOG00000018010	-	100	54.253	Gadus_morhua
ENSMUSG00000024135	Srbd1	99	78.571	ENSGALG00000009990	SRBD1	100	69.539	Gallus_gallus
ENSMUSG00000024135	Srbd1	99	56.272	ENSGAFG00000019664	si:ch211-117n7.8	84	56.992	Gambusia_affinis
ENSMUSG00000024135	Srbd1	99	51.220	ENSGACG00000010794	si:ch211-117n7.8	100	59.680	Gasterosteus_aculeatus
ENSMUSG00000024135	Srbd1	99	78.571	ENSGAGG00000006166	SRBD1	99	79.447	Gopherus_agassizii
ENSMUSG00000024135	Srbd1	99	83.673	ENSGGOG00000005910	SRBD1	100	83.058	Gorilla_gorilla
ENSMUSG00000024135	Srbd1	100	54.225	ENSHBUG00000013207	si:ch211-117n7.8	99	46.035	Haplochromis_burtoni
ENSMUSG00000024135	Srbd1	99	84.114	ENSHGLG00000018153	-	99	84.114	Heterocephalus_glaber_female
ENSMUSG00000024135	Srbd1	99	83.910	ENSHGLG00100015183	-	99	83.910	Heterocephalus_glaber_male
ENSMUSG00000024135	Srbd1	93	54.430	ENSHCOG00000020901	-	99	54.430	Hippocampus_comes
ENSMUSG00000024135	Srbd1	99	57.513	ENSIPUG00000009661	srbd1	85	59.881	Ictalurus_punctatus
ENSMUSG00000024135	Srbd1	100	84.772	ENSSTOG00000005898	SRBD1	100	84.451	Ictidomys_tridecemlineatus
ENSMUSG00000024135	Srbd1	99	84.694	ENSJJAG00000022244	Srbd1	100	79.209	Jaculus_jaculus
ENSMUSG00000024135	Srbd1	99	55.000	ENSKMAG00000003473	si:ch211-117n7.8	99	50.595	Kryptolebias_marmoratus
ENSMUSG00000024135	Srbd1	100	54.861	ENSLBEG00000027518	si:ch211-117n7.8	99	50.681	Labrus_bergylta
ENSMUSG00000024135	Srbd1	99	70.408	ENSLACG00000009790	SRBD1	99	69.787	Latimeria_chalumnae
ENSMUSG00000024135	Srbd1	99	62.724	ENSLOCG00000016360	si:ch211-117n7.8	99	57.340	Lepisosteus_oculatus
ENSMUSG00000024135	Srbd1	99	83.077	ENSLAFG00000004190	-	99	80.634	Loxodonta_africana
ENSMUSG00000024135	Srbd1	99	83.673	ENSMFAG00000042026	SRBD1	100	82.513	Macaca_fascicularis
ENSMUSG00000024135	Srbd1	99	83.673	ENSMMUG00000003490	SRBD1	100	82.412	Macaca_mulatta
ENSMUSG00000024135	Srbd1	99	83.673	ENSMNEG00000034701	SRBD1	100	80.000	Macaca_nemestrina
ENSMUSG00000024135	Srbd1	100	82.412	ENSMLEG00000000745	SRBD1	100	82.412	Mandrillus_leucophaeus
ENSMUSG00000024135	Srbd1	97	56.316	ENSMAMG00000021921	si:ch211-117n7.8	99	51.140	Mastacembelus_armatus
ENSMUSG00000024135	Srbd1	96	56.343	ENSMZEG00005027369	si:ch211-117n7.8	92	52.401	Maylandia_zebra
ENSMUSG00000024135	Srbd1	99	77.665	ENSMGAG00000010273	SRBD1	99	74.372	Meleagris_gallopavo
ENSMUSG00000024135	Srbd1	99	89.175	ENSMAUG00000013916	Srbd1	95	88.806	Mesocricetus_auratus
ENSMUSG00000024135	Srbd1	100	82.530	ENSMICG00000007835	SRBD1	100	82.530	Microcebus_murinus
ENSMUSG00000024135	Srbd1	100	88.403	ENSMOCG00000018716	Srbd1	100	88.403	Microtus_ochrogaster
ENSMUSG00000024135	Srbd1	100	53.310	ENSMMOG00000007507	si:ch211-117n7.8	99	51.537	Mola_mola
ENSMUSG00000024135	Srbd1	96	55.515	ENSMALG00000001562	si:ch211-117n7.8	98	51.193	Monopterus_albus
ENSMUSG00000024135	Srbd1	100	98.573	MGP_CAROLIEiJ_G0021934	Srbd1	100	98.573	Mus_caroli
ENSMUSG00000024135	Srbd1	100	96.024	MGP_PahariEiJ_G0020924	Srbd1	100	96.024	Mus_pahari
ENSMUSG00000024135	Srbd1	100	99.083	MGP_SPRETEiJ_G0022850	Srbd1	100	99.083	Mus_spretus
ENSMUSG00000024135	Srbd1	100	80.441	ENSMLUG00000007039	SRBD1	100	80.441	Myotis_lucifugus
ENSMUSG00000024135	Srbd1	100	82.626	ENSNGAG00000011893	Srbd1	100	82.626	Nannospalax_galili
ENSMUSG00000024135	Srbd1	96	55.970	ENSNBRG00000012873	si:ch211-117n7.8	99	50.966	Neolamprologus_brichardi
ENSMUSG00000024135	Srbd1	100	82.111	ENSNLEG00000016877	SRBD1	100	82.111	Nomascus_leucogenys
ENSMUSG00000024135	Srbd1	99	84.184	ENSODEG00000012095	SRBD1	100	82.012	Octodon_degus
ENSMUSG00000024135	Srbd1	96	56.343	ENSONIG00000000945	si:ch211-117n7.8	100	57.503	Oreochromis_niloticus
ENSMUSG00000024135	Srbd1	100	82.863	ENSOCUG00000015385	SRBD1	100	83.468	Oryctolagus_cuniculus
ENSMUSG00000024135	Srbd1	96	47.232	ENSORLG00000004427	si:ch211-117n7.8	83	52.975	Oryzias_latipes
ENSMUSG00000024135	Srbd1	96	56.827	ENSORLG00020012792	si:ch211-117n7.8	83	56.163	Oryzias_latipes_hni
ENSMUSG00000024135	Srbd1	96	55.970	ENSORLG00015018598	si:ch211-117n7.8	84	55.776	Oryzias_latipes_hsok
ENSMUSG00000024135	Srbd1	100	53.873	ENSOMEG00000012229	si:ch211-117n7.8	83	55.634	Oryzias_melastigma
ENSMUSG00000024135	Srbd1	99	82.653	ENSOGAG00000001076	SRBD1	100	77.789	Otolemur_garnettii
ENSMUSG00000024135	Srbd1	99	82.143	ENSOARG00000005958	SRBD1	100	76.819	Ovis_aries
ENSMUSG00000024135	Srbd1	100	82.312	ENSPPAG00000038442	SRBD1	100	82.312	Pan_paniscus
ENSMUSG00000024135	Srbd1	100	82.513	ENSPPRG00000003449	SRBD1	100	82.513	Panthera_pardus
ENSMUSG00000024135	Srbd1	100	82.613	ENSPTIG00000012495	SRBD1	100	82.613	Panthera_tigris_altaica
ENSMUSG00000024135	Srbd1	100	82.312	ENSPTRG00000011889	SRBD1	100	82.312	Pan_troglodytes
ENSMUSG00000024135	Srbd1	100	82.211	ENSPANG00000008063	SRBD1	100	82.211	Papio_anubis
ENSMUSG00000024135	Srbd1	100	54.930	ENSPKIG00000021973	si:ch211-117n7.8	98	54.253	Paramormyrops_kingsleyae
ENSMUSG00000024135	Srbd1	99	79.082	ENSPSIG00000008992	SRBD1	100	71.976	Pelodiscus_sinensis
ENSMUSG00000024135	Srbd1	99	54.122	ENSPMGG00000013348	si:ch211-117n7.8	99	52.077	Periophthalmus_magnuspinnatus
ENSMUSG00000024135	Srbd1	99	90.722	ENSPEMG00000020684	Srbd1	100	87.475	Peromyscus_maniculatus_bairdii
ENSMUSG00000024135	Srbd1	99	55.556	ENSPFOG00000010650	si:ch211-117n7.8	83	57.109	Poecilia_formosa
ENSMUSG00000024135	Srbd1	99	55.556	ENSPLAG00000002141	si:ch211-117n7.8	84	57.227	Poecilia_latipinna
ENSMUSG00000024135	Srbd1	99	55.914	ENSPMEG00000018537	si:ch211-117n7.8	83	57.227	Poecilia_mexicana
ENSMUSG00000024135	Srbd1	99	55.319	ENSPREG00000003258	si:ch211-117n7.8	86	56.792	Poecilia_reticulata
ENSMUSG00000024135	Srbd1	99	84.184	ENSPPYG00000012444	SRBD1	99	75.355	Pongo_abelii
ENSMUSG00000024135	Srbd1	91	78.161	ENSPCAG00000005629	SRBD1	86	79.518	Procavia_capensis
ENSMUSG00000024135	Srbd1	99	83.673	ENSPCOG00000017669	SRBD1	100	70.411	Propithecus_coquereli
ENSMUSG00000024135	Srbd1	99	83.673	ENSPVAG00000001782	SRBD1	100	72.060	Pteropus_vampyrus
ENSMUSG00000024135	Srbd1	96	56.343	ENSPNYG00000000508	si:ch211-117n7.8	99	49.693	Pundamilia_nyererei
ENSMUSG00000024135	Srbd1	99	57.914	ENSPNAG00000013492	SRBD1	93	57.143	Pygocentrus_nattereri
ENSMUSG00000024135	Srbd1	100	93.381	ENSRNOG00000014720	Srbd1	99	93.381	Rattus_norvegicus
ENSMUSG00000024135	Srbd1	99	82.653	ENSRBIG00000033486	SRBD1	99	82.075	Rhinopithecus_bieti
ENSMUSG00000024135	Srbd1	99	82.653	ENSRROG00000041599	SRBD1	99	82.075	Rhinopithecus_roxellana
ENSMUSG00000024135	Srbd1	99	85.204	ENSSBOG00000024982	SRBD1	100	81.910	Saimiri_boliviensis_boliviensis
ENSMUSG00000024135	Srbd1	98	54.676	ENSSFOG00015001128	si:ch211-117n7.8	97	56.793	Scleropages_formosus
ENSMUSG00000024135	Srbd1	99	53.763	ENSSMAG00000018256	si:ch211-117n7.8	83	56.840	Scophthalmus_maximus
ENSMUSG00000024135	Srbd1	99	53.571	ENSSLDG00000023189	si:ch211-117n7.8	83	56.169	Seriola_lalandi_dorsalis
ENSMUSG00000024135	Srbd1	96	82.632	ENSSARG00000009740	SRBD1	100	75.254	Sorex_araneus
ENSMUSG00000024135	Srbd1	99	72.821	ENSSPUG00000010475	SRBD1	99	74.212	Sphenodon_punctatus
ENSMUSG00000024135	Srbd1	100	53.873	ENSSPAG00000008092	-	99	48.860	Stegastes_partitus
ENSMUSG00000024135	Srbd1	98	55.276	ENSSPAG00000014206	-	98	55.276	Stegastes_partitus
ENSMUSG00000024135	Srbd1	99	84.694	ENSSSCG00000008445	SRBD1	98	82.430	Sus_scrofa
ENSMUSG00000024135	Srbd1	98	76.289	ENSTGUG00000003878	SRBD1	100	76.145	Taeniopygia_guttata
ENSMUSG00000024135	Srbd1	98	53.597	ENSTRUG00000007080	si:ch211-117n7.8	93	56.773	Takifugu_rubripes
ENSMUSG00000024135	Srbd1	100	51.877	ENSTNIG00000007464	si:ch211-117n7.8	97	50.745	Tetraodon_nigroviridis
ENSMUSG00000024135	Srbd1	82	95.745	ENSTBEG00000004556	SRBD1	82	95.745	Tupaia_belangeri
ENSMUSG00000024135	Srbd1	99	84.694	ENSTTRG00000011871	SRBD1	94	82.173	Tursiops_truncatus
ENSMUSG00000024135	Srbd1	100	82.028	ENSUAMG00000008126	SRBD1	100	80.572	Ursus_americanus
ENSMUSG00000024135	Srbd1	100	82.129	ENSUMAG00000012902	SRBD1	98	82.129	Ursus_maritimus
ENSMUSG00000024135	Srbd1	99	82.653	ENSVPAG00000006825	SRBD1	99	84.462	Vicugna_pacos
ENSMUSG00000024135	Srbd1	100	82.129	ENSVVUG00000005389	SRBD1	100	82.631	Vulpes_vulpes
ENSMUSG00000024135	Srbd1	96	66.176	ENSXETG00000002760	srbd1	100	51.638	Xenopus_tropicalis
ENSMUSG00000024135	Srbd1	99	56.631	ENSXMAG00000016861	si:ch211-117n7.8	89	55.127	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003735	structural constituent of ribosome	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0006139	nucleobase-containing compound metabolic process	-	IEA	Process
GO:0006412	translation	21873635.	IBA	Process