EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000024217 (Gene tree)
Gene ID
20630
Gene Symbol
Snrpc
Alias
Snrp1c|U1-C
Full Name
U1 small nuclear ribonucleoprotein C
Gene Type
protein_coding
Species
Mus_musculus
Status
putative
Strand
Plus strand
Length
13819 bases
Position
chr17:27838150-27851968
Accession
109489
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000063976zf-U1PF06220.122.5e-2211
ENSMUSP00000156707zf-U1PF06220.122.5e-2211
ENSMUSP00000156644zf-U1PF06220.129.5e-2011
ENSMUSP00000156747zf-U1PF06220.123.1e-0811
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000233657-882-ENSMUSP00000156644182 (aa)--
ENSMUST00000233752-1013-ENSMUSP00000156747157 (aa)--
ENSMUST00000137581-6107--- (aa)--
ENSMUST00000232873-984-ENSMUSP00000156707159 (aa)-Q569X3
ENSMUST00000071006-758-ENSMUSP00000063976159 (aa)-Q62241
Gene Model
Click here to download ENSMUSG00000024217's gene model file
Pathways
Pathway IDPathway NameSource
mmu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000024217's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000024217Snrpc10099.371ENSG00000124562SNRPC10099.371Homo_sapiens
ENSMUSG00000024217Snrpc10097.484ENSAMEG00000000963SNRPC9591.279Ailuropoda_melanoleuca
ENSMUSG00000024217Snrpc9996.178ENSACAG00000015721SNRPC8895.570Anolis_carolinensis
ENSMUSG00000024217Snrpc10075.472ENSANAG00000021444-6182.292Aotus_nancymaae
ENSMUSG00000024217Snrpc10086.792ENSANAG00000021026-10079.874Aotus_nancymaae
ENSMUSG00000024217Snrpc9991.139ENSANAG00000020588-9291.139Aotus_nancymaae
ENSMUSG00000024217Snrpc10094.969ENSANAG00000019157-10094.969Aotus_nancymaae
ENSMUSG00000024217Snrpc10099.371ENSANAG00000019696-10099.371Aotus_nancymaae
ENSMUSG00000024217Snrpc10098.742ENSANAG00000007843-10098.742Aotus_nancymaae
ENSMUSG00000024217Snrpc10088.679ENSANAG00000019726-9289.308Aotus_nancymaae
ENSMUSG00000024217Snrpc10084.277ENSAMXG00000032641snrpc8784.277Astyanax_mexicanus
ENSMUSG00000024217Snrpc10099.371ENSBTAG00000024549SNRPC10099.371Bos_taurus
ENSMUSG00000024217Snrpc10099.371ENSCJAG00000015321-10099.371Callithrix_jacchus
ENSMUSG00000024217Snrpc10098.113ENSCJAG00000043055-10098.113Callithrix_jacchus
ENSMUSG00000024217Snrpc10096.855ENSCJAG00000041822-10096.855Callithrix_jacchus
ENSMUSG00000024217Snrpc10077.987ENSCAFG00000025525-10077.987Canis_familiaris
ENSMUSG00000024217Snrpc10096.875ENSCAFG00000028988-10096.875Canis_familiaris
ENSMUSG00000024217Snrpc10094.969ENSCAFG00000031775-10094.969Canis_familiaris
ENSMUSG00000024217Snrpc7499.153ENSCAFG00000001231-9399.153Canis_familiaris
ENSMUSG00000024217Snrpc10095.597ENSCAFG00020005758-9996.178Canis_lupus_dingo
ENSMUSG00000024217Snrpc10078.090ENSCAFG00020026577-10084.270Canis_lupus_dingo
ENSMUSG00000024217Snrpc10094.969ENSCAFG00020017383-10094.969Canis_lupus_dingo
ENSMUSG00000024217Snrpc9987.898ENSCAFG00020009944-9087.898Canis_lupus_dingo
ENSMUSG00000024217Snrpc10099.371ENSCAFG00020005945-10099.371Canis_lupus_dingo
ENSMUSG00000024217Snrpc10071.698ENSCHIG00000005039-8968.310Capra_hircus
ENSMUSG00000024217Snrpc10098.742ENSCHIG00000012087-10098.742Capra_hircus
ENSMUSG00000024217Snrpc10099.371ENSTSYG00000011216-10099.371Carlito_syrichta
ENSMUSG00000024217Snrpc9988.608ENSTSYG00000029745-6293.496Carlito_syrichta
ENSMUSG00000024217Snrpc10082.390ENSTSYG00000025721-10076.101Carlito_syrichta
ENSMUSG00000024217Snrpc9099.296ENSCAPG00000005161SNRPC10099.296Cavia_aperea
ENSMUSG00000024217Snrpc10099.371ENSCPOG00000008563SNRPC10099.371Cavia_porcellus
ENSMUSG00000024217Snrpc9980.892ENSCCAG00000026624-6675.796Cebus_capucinus
ENSMUSG00000024217Snrpc10093.711ENSCCAG00000036059-8993.711Cebus_capucinus
ENSMUSG00000024217Snrpc9891.026ENSCCAG00000022751-9591.026Cebus_capucinus
ENSMUSG00000024217Snrpc9879.487ENSCCAG00000022209-9579.487Cebus_capucinus
ENSMUSG00000024217Snrpc10069.811ENSCCAG00000028293-6189.873Cebus_capucinus
ENSMUSG00000024217Snrpc10099.371ENSCATG00000035787SNRPC10099.371Cercocebus_atys
ENSMUSG00000024217Snrpc10099.371ENSCLAG00000016920SNRPC10099.371Chinchilla_lanigera
ENSMUSG00000024217Snrpc9980.892ENSCLAG00000010242-9680.892Chinchilla_lanigera
ENSMUSG00000024217Snrpc10078.652ENSCSAG00000009821SNRPC10084.831Chlorocebus_sabaeus
ENSMUSG00000024217Snrpc10081.132ENSCHOG00000011439SNRPC8882.166Choloepus_hoffmanni
ENSMUSG00000024217Snrpc10096.855ENSCPBG00000027142SNRPC10096.855Chrysemys_picta_bellii
ENSMUSG00000024217Snrpc7557.724ENSCING00000021229ci-zf(matrin)-45185.484Ciona_intestinalis
ENSMUSG00000024217Snrpc10099.371ENSCANG00000028035SNRPC10099.371Colobus_angolensis_palliatus
ENSMUSG00000024217Snrpc10088.050ENSCGRG00001021483-10081.761Cricetulus_griseus_chok1gshd
ENSMUSG00000024217Snrpc100100.000ENSCGRG00001009011-100100.000Cricetulus_griseus_chok1gshd
ENSMUSG00000024217Snrpc9999.363ENSCGRG00000005005Snrpc9999.363Cricetulus_griseus_crigri
ENSMUSG00000024217Snrpc10084.277ENSDARG00000009871snrpc8982.394Danio_rerio
ENSMUSG00000024217Snrpc7598.319ENSDNOG00000042403-9498.319Dasypus_novemcinctus
ENSMUSG00000024217Snrpc10098.113ENSDNOG00000034699-9998.113Dasypus_novemcinctus
ENSMUSG00000024217Snrpc10080.503ENSDORG00000005955Snrpc6679.618Dipodomys_ordii
ENSMUSG00000024217Snrpc9891.667ENSETEG00000011265-10091.667Echinops_telfairi
ENSMUSG00000024217Snrpc5293.976ENSETEG00000008756-7897.500Echinops_telfairi
ENSMUSG00000024217Snrpc9895.513ENSETEG00000008268-10095.513Echinops_telfairi
ENSMUSG00000024217Snrpc10099.371ENSEASG00005021007SNRPC10099.371Equus_asinus_asinus
ENSMUSG00000024217Snrpc10099.371ENSECAG00000026848SNRPC10099.371Equus_caballus
ENSMUSG00000024217Snrpc9979.747ENSEEUG00000014633SNRPC9378.049Erinaceus_europaeus
ENSMUSG00000024217Snrpc10092.453ENSFCAG00000031775-9686.127Felis_catus
ENSMUSG00000024217Snrpc10099.371ENSFCAG00000044077-10099.371Felis_catus
ENSMUSG00000024217Snrpc10098.113ENSFALG00000003756SNRPC10098.113Ficedula_albicollis
ENSMUSG00000024217Snrpc10099.371ENSFDAG00000018111SNRPC10099.371Fukomys_damarensis
ENSMUSG00000024217Snrpc10096.250ENSGALG00000002773SNRPC10096.250Gallus_gallus
ENSMUSG00000024217Snrpc10096.855ENSGAGG00000003063SNRPC10096.855Gopherus_agassizii
ENSMUSG00000024217Snrpc10099.371ENSGGOG00000012499SNRPC10099.371Gorilla_gorilla
ENSMUSG00000024217Snrpc8174.419ENSHGLG00000005871-10074.843Heterocephalus_glaber_female
ENSMUSG00000024217Snrpc10080.503ENSHGLG00000017741-10077.987Heterocephalus_glaber_female
ENSMUSG00000024217Snrpc10099.371ENSHGLG00000013981SNRPC10099.371Heterocephalus_glaber_female
ENSMUSG00000024217Snrpc10094.969ENSHGLG00100017764-10094.969Heterocephalus_glaber_male
ENSMUSG00000024217Snrpc10080.503ENSHGLG00100010786-10077.987Heterocephalus_glaber_male
ENSMUSG00000024217Snrpc10099.371ENSHGLG00100009478SNRPC10099.371Heterocephalus_glaber_male
ENSMUSG00000024217Snrpc10084.906ENSIPUG00000024851snrpc10084.906Ictalurus_punctatus
ENSMUSG00000024217Snrpc10099.371ENSSTOG00000013786SNRPC10099.371Ictidomys_tridecemlineatus
ENSMUSG00000024217Snrpc100100.000ENSJJAG00000021741Snrpc100100.000Jaculus_jaculus
ENSMUSG00000024217Snrpc10088.125ENSLACG00000013753SNRPC8891.139Latimeria_chalumnae
ENSMUSG00000024217Snrpc10099.371ENSLAFG00000013534SNRPC10099.371Loxodonta_africana
ENSMUSG00000024217Snrpc10099.371ENSMFAG00000031764-10099.371Macaca_fascicularis
ENSMUSG00000024217Snrpc10098.742ENSMFAG00000030525-10098.742Macaca_fascicularis
ENSMUSG00000024217Snrpc10090.566ENSMMUG00000045425-10090.566Macaca_mulatta
ENSMUSG00000024217Snrpc10098.113ENSMMUG00000039415-10098.113Macaca_mulatta
ENSMUSG00000024217Snrpc10098.113ENSMMUG00000000869-9798.113Macaca_mulatta
ENSMUSG00000024217Snrpc10099.371ENSMNEG00000032731SNRPC10099.371Macaca_nemestrina
ENSMUSG00000024217Snrpc9791.613ENSMLEG00000040224-9190.506Mandrillus_leucophaeus
ENSMUSG00000024217Snrpc10099.371ENSMLEG00000033916-10099.371Mandrillus_leucophaeus
ENSMUSG00000024217Snrpc10096.226ENSMGAG00000006054SNRPC10096.226Meleagris_gallopavo
ENSMUSG00000024217Snrpc10098.742ENSMICG00000007339-10098.742Microcebus_murinus
ENSMUSG00000024217Snrpc10087.421ENSMICG00000009130-10088.050Microcebus_murinus
ENSMUSG00000024217Snrpc10098.742ENSMICG00000032183-10098.742Microcebus_murinus
ENSMUSG00000024217Snrpc10084.277ENSMICG00000036552-8779.487Microcebus_murinus
ENSMUSG00000024217Snrpc100100.000ENSMOCG00000017609Snrpc100100.000Microtus_ochrogaster
ENSMUSG00000024217Snrpc10098.113ENSMODG00000013904-10098.113Monodelphis_domestica
ENSMUSG00000024217Snrpc100100.000MGP_CAROLIEiJ_G0021308Snrpc100100.000Mus_caroli
ENSMUSG00000024217Snrpc74100.000MGP_SPRETEiJ_G0022221-98100.000Mus_spretus
ENSMUSG00000024217Snrpc10097.484ENSMPUG00000003210SNRPC10097.484Mustela_putorius_furo
ENSMUSG00000024217Snrpc10097.484ENSMLUG00000002488SNRPC10097.484Myotis_lucifugus
ENSMUSG00000024217Snrpc100100.000ENSNGAG00000019686Snrpc100100.000Nannospalax_galili
ENSMUSG00000024217Snrpc10099.371ENSNLEG00000034810SNRPC10099.371Nomascus_leucogenys
ENSMUSG00000024217Snrpc9098.592ENSMEUG00000009300SNRPC10098.592Notamacropus_eugenii
ENSMUSG00000024217Snrpc10098.113ENSODEG00000019633-10098.113Octodon_degus
ENSMUSG00000024217Snrpc10099.371ENSODEG00000017080-10099.371Octodon_degus
ENSMUSG00000024217Snrpc10099.371ENSODEG00000020370-10099.371Octodon_degus
ENSMUSG00000024217Snrpc10098.742ENSODEG00000020201-10098.742Octodon_degus
ENSMUSG00000024217Snrpc7793.496ENSODEG00000006008-8893.496Octodon_degus
ENSMUSG00000024217Snrpc10099.371ENSODEG00000018985-10099.371Octodon_degus
ENSMUSG00000024217Snrpc9195.918ENSOANG00000003405SNRPC9995.918Ornithorhynchus_anatinus
ENSMUSG00000024217Snrpc10098.113ENSOCUG00000026430-9998.113Oryctolagus_cuniculus
ENSMUSG00000024217Snrpc10099.371ENSOCUG00000026668-10099.371Oryctolagus_cuniculus
ENSMUSG00000024217Snrpc10096.855ENSOCUG00000023292-10096.855Oryctolagus_cuniculus
ENSMUSG00000024217Snrpc5677.273ENSORLG00020012607SNRPC5377.273Oryzias_latipes_hni
ENSMUSG00000024217Snrpc5677.273ENSOMEG00000012014snrpc7675.524Oryzias_melastigma
ENSMUSG00000024217Snrpc9783.766ENSOGAG00000028405-9979.221Otolemur_garnettii
ENSMUSG00000024217Snrpc9998.726ENSOGAG00000008755-8998.101Otolemur_garnettii
ENSMUSG00000024217Snrpc10097.484ENSOGAG00000026269-10097.484Otolemur_garnettii
ENSMUSG00000024217Snrpc10099.371ENSOARG00000010823SNRPC10099.371Ovis_aries
ENSMUSG00000024217Snrpc10099.371ENSPPAG00000043871SNRPC10099.371Pan_paniscus
ENSMUSG00000024217Snrpc10099.371ENSPPRG00000008647-10099.371Panthera_pardus
ENSMUSG00000024217Snrpc9660.390ENSPPRG00000016017-8754.194Panthera_pardus
ENSMUSG00000024217Snrpc10099.371ENSPTIG00000021867-10099.371Panthera_tigris_altaica
ENSMUSG00000024217Snrpc9763.226ENSPTIG00000013329-6281.053Panthera_tigris_altaica
ENSMUSG00000024217Snrpc10099.371ENSPTRG00000018070SNRPC10099.371Pan_troglodytes
ENSMUSG00000024217Snrpc10099.371ENSPANG00000022802-10099.371Papio_anubis
ENSMUSG00000024217Snrpc10089.308ENSPANG00000018228-9489.308Papio_anubis
ENSMUSG00000024217Snrpc10081.250ENSPKIG00000001671SNRPC9176.224Paramormyrops_kingsleyae
ENSMUSG00000024217Snrpc5987.234ENSPKIG00000003136snrpc8984.783Paramormyrops_kingsleyae
ENSMUSG00000024217Snrpc9995.541ENSPSIG00000004876SNRPC8885.556Pelodiscus_sinensis
ENSMUSG00000024217Snrpc10088.050ENSPEMG00000002763-10085.535Peromyscus_maniculatus_bairdii
ENSMUSG00000024217Snrpc100100.000ENSPEMG00000010773Snrpc100100.000Peromyscus_maniculatus_bairdii
ENSMUSG00000024217Snrpc5298.795ENSPPYG00000029902-8498.795Pongo_abelii
ENSMUSG00000024217Snrpc9998.726ENSPCAG00000016885SNRPC9098.726Procavia_capensis
ENSMUSG00000024217Snrpc10099.371ENSPCOG00000004904SNRPC10099.371Propithecus_coquereli
ENSMUSG00000024217Snrpc9998.089ENSPVAG00000015597SNRPC8798.089Pteropus_vampyrus
ENSMUSG00000024217Snrpc10078.616ENSPNAG00000012799snrpc8979.577Pygocentrus_nattereri
ENSMUSG00000024217Snrpc100100.000ENSRNOG00000000493Snrpc100100.000Rattus_norvegicus
ENSMUSG00000024217Snrpc10098.742ENSRBIG00000022998-10098.742Rhinopithecus_bieti
ENSMUSG00000024217Snrpc10099.371ENSRBIG00000037567-10099.371Rhinopithecus_bieti
ENSMUSG00000024217Snrpc10098.742ENSRBIG00000014819-10098.742Rhinopithecus_bieti
ENSMUSG00000024217Snrpc10089.937ENSRBIG00000036353-8389.937Rhinopithecus_bieti
ENSMUSG00000024217Snrpc10099.371ENSRROG00000041300SNRPC10099.371Rhinopithecus_roxellana
ENSMUSG00000024217Snrpc9582.119ENSSBOG00000032361-6680.208Saimiri_boliviensis_boliviensis
ENSMUSG00000024217Snrpc9880.769ENSSBOG00000032882-9380.769Saimiri_boliviensis_boliviensis
ENSMUSG00000024217Snrpc9882.051ENSSBOG00000023189-9182.051Saimiri_boliviensis_boliviensis
ENSMUSG00000024217Snrpc10099.371ENSSBOG00000031528-10099.371Saimiri_boliviensis_boliviensis
ENSMUSG00000024217Snrpc9998.089ENSSHAG00000000945-9790.286Sarcophilus_harrisii
ENSMUSG00000024217Snrpc5884.783ENSSFOG00015022422snrpc6884.906Scleropages_formosus
ENSMUSG00000024217Snrpc10081.132ENSSFOG00015019150snrpc9078.322Scleropages_formosus
ENSMUSG00000024217Snrpc10075.472ENSSARG00000008970SNRPC9273.780Sorex_araneus
ENSMUSG00000024217Snrpc10097.484ENSSPUG00000002502SNRPC10097.484Sphenodon_punctatus
ENSMUSG00000024217Snrpc10099.371ENSSSCG00000001531SNRPC10099.371Sus_scrofa
ENSMUSG00000024217Snrpc10096.855ENSTGUG00000001773SNRPC10096.855Taeniopygia_guttata
ENSMUSG00000024217Snrpc10073.457ENSTNIG00000018307snrpc8970.833Tetraodon_nigroviridis
ENSMUSG00000024217Snrpc9873.077ENSTBEG00000015356-6690.323Tupaia_belangeri
ENSMUSG00000024217Snrpc9891.667ENSTBEG00000013022-10091.667Tupaia_belangeri
ENSMUSG00000024217Snrpc9072.535ENSTBEG00000016759-7972.535Tupaia_belangeri
ENSMUSG00000024217Snrpc10097.484ENSTTRG00000007827SNRPC8699.359Tursiops_truncatus
ENSMUSG00000024217Snrpc7598.319ENSUAMG00000014125SNRPC8098.319Ursus_americanus
ENSMUSG00000024217Snrpc10088.764ENSUMAG00000010869SNRPC10088.764Ursus_maritimus
ENSMUSG00000024217Snrpc9073.944ENSVPAG00000003106SNRPC7973.944Vicugna_pacos
ENSMUSG00000024217Snrpc9794.156ENSVVUG00000010467-8794.231Vulpes_vulpes
ENSMUSG00000024217Snrpc10098.113ENSVVUG00000021947-10098.113Vulpes_vulpes
ENSMUSG00000024217Snrpc10089.308ENSXETG00000024721snrpc10089.308Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000387spliceosomal snRNP assembly-IEAProcess
GO:0000395mRNA 5'-splice site recognition21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome-IEAProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus-ISOComponent
GO:0005685U1 snRNP21873635.IBAComponent
GO:0005685U1 snRNP-ISOComponent
GO:0008270zinc ion binding-IEAFunction
GO:0030627pre-mRNA 5'-splice site binding21873635.IBAFunction
GO:0046872metal ion binding-IEAFunction
GO:1990446U1 snRNP binding-ISOFunction

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