EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000024258 (Gene tree)
Gene ID: 69241
Gene Symbol: Polr2d
Alias: 2310002G05Rik|2610028L19Rik|HSRBP4|RBP4
Full Name: polymerase (RNA) II (DNA directed) polypeptide D
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 7543 bases
Position: chr18:31789159-31796701
Accession: 1916491
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000025106	RNA_pol_Rpb4	PF03874.16	1.1e-24	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000025106	-	1015	-	ENSMUSP00000025106	142 (aa)	-	Q9D7M8
ENSMUST00000234146	-	706	XM_017317977	ENSMUSP00000157052	110 (aa)	XP_017173466	UPI00001EBE52

Gene Model

Click here to download ENSMUSG00000024258's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03020	RNA polymerase	KEGG
mmu05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000024258's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000024258	Polr2d	100	100.000	ENSG00000144231	POLR2D	100	100.000	Homo_sapiens
ENSMUSG00000024258	Polr2d	99	90.071	ENSAPOG00000023553	polr2d	98	90.071	Acanthochromis_polyacanthus
ENSMUSG00000024258	Polr2d	100	98.611	ENSAMEG00000011746	POLR2D	100	98.611	Ailuropoda_melanoleuca
ENSMUSG00000024258	Polr2d	99	90.071	ENSAOCG00000007295	polr2d	98	90.071	Amphiprion_ocellaris
ENSMUSG00000024258	Polr2d	99	90.071	ENSAPEG00000018714	polr2d	98	90.071	Amphiprion_percula
ENSMUSG00000024258	Polr2d	100	90.972	ENSATEG00000020416	polr2d	100	90.972	Anabas_testudineus
ENSMUSG00000024258	Polr2d	100	96.479	ENSACAG00000005255	POLR2D	100	96.479	Anolis_carolinensis
ENSMUSG00000024258	Polr2d	100	100.000	ENSANAG00000019959	POLR2D	100	100.000	Aotus_nancymaae
ENSMUSG00000024258	Polr2d	100	90.278	ENSACLG00000009919	polr2d	100	70.139	Astatotilapia_calliptera
ENSMUSG00000024258	Polr2d	94	94.737	ENSAMXG00000008954	polr2d	100	90.210	Astyanax_mexicanus
ENSMUSG00000024258	Polr2d	100	99.296	ENSBTAG00000053244	POLR2D	100	99.296	Bos_taurus
ENSMUSG00000024258	Polr2d	99	57.639	WBGene00018391	rpb-4	100	57.639	Caenorhabditis_elegans
ENSMUSG00000024258	Polr2d	100	100.000	ENSCJAG00000042216	-	100	100.000	Callithrix_jacchus
ENSMUSG00000024258	Polr2d	100	99.296	ENSCJAG00000021814	-	100	99.296	Callithrix_jacchus
ENSMUSG00000024258	Polr2d	100	100.000	ENSCAFG00000004311	POLR2D	100	100.000	Canis_familiaris
ENSMUSG00000024258	Polr2d	100	100.000	ENSCAFG00020003617	POLR2D	100	100.000	Canis_lupus_dingo
ENSMUSG00000024258	Polr2d	100	98.592	ENSCHIG00000025995	POLR2D	100	98.592	Capra_hircus
ENSMUSG00000024258	Polr2d	82	99.145	ENSTSYG00000036021	POLR2D	100	99.145	Carlito_syrichta
ENSMUSG00000024258	Polr2d	100	98.592	ENSCPOG00000002571	POLR2D	100	98.592	Cavia_porcellus
ENSMUSG00000024258	Polr2d	100	100.000	ENSCCAG00000037709	POLR2D	100	100.000	Cebus_capucinus
ENSMUSG00000024258	Polr2d	100	99.296	ENSCATG00000036749	POLR2D	100	99.296	Cercocebus_atys
ENSMUSG00000024258	Polr2d	100	99.296	ENSCLAG00000004449	POLR2D	100	99.296	Chinchilla_lanigera
ENSMUSG00000024258	Polr2d	100	99.296	ENSCSAG00000016861	POLR2D	100	99.296	Chlorocebus_sabaeus
ENSMUSG00000024258	Polr2d	82	100.000	ENSCHOG00000013850	POLR2D	100	100.000	Choloepus_hoffmanni
ENSMUSG00000024258	Polr2d	100	95.775	ENSCPBG00000019132	POLR2D	51	95.775	Chrysemys_picta_bellii
ENSMUSG00000024258	Polr2d	90	86.719	ENSCING00000011474	-	96	86.719	Ciona_intestinalis
ENSMUSG00000024258	Polr2d	90	86.719	ENSCSAVG00000008353	-	88	86.719	Ciona_savignyi
ENSMUSG00000024258	Polr2d	100	100.000	ENSCANG00000043665	POLR2D	100	100.000	Colobus_angolensis_palliatus
ENSMUSG00000024258	Polr2d	100	100.000	ENSCGRG00001013608	Polr2d	100	100.000	Cricetulus_griseus_chok1gshd
ENSMUSG00000024258	Polr2d	82	100.000	ENSCGRG00000012624	Polr2d	100	100.000	Cricetulus_griseus_crigri
ENSMUSG00000024258	Polr2d	100	90.278	ENSCSEG00000006147	polr2d	100	90.278	Cynoglossus_semilaevis
ENSMUSG00000024258	Polr2d	100	90.972	ENSCVAG00000000779	polr2d	100	90.972	Cyprinodon_variegatus
ENSMUSG00000024258	Polr2d	100	92.254	ENSDARG00000076509	polr2d	100	92.254	Danio_rerio
ENSMUSG00000024258	Polr2d	100	97.887	ENSDNOG00000008527	POLR2D	100	97.887	Dasypus_novemcinctus
ENSMUSG00000024258	Polr2d	100	99.296	ENSDORG00000026897	Polr2d	100	99.296	Dipodomys_ordii
ENSMUSG00000024258	Polr2d	92	77.692	FBgn0263757	Rpb4	94	77.692	Drosophila_melanogaster
ENSMUSG00000024258	Polr2d	100	92.254	ENSEBUG00000007675	polr2d	100	92.254	Eptatretus_burgeri
ENSMUSG00000024258	Polr2d	100	99.296	ENSEASG00005007103	POLR2D	100	99.296	Equus_asinus_asinus
ENSMUSG00000024258	Polr2d	100	100.000	ENSECAG00000000556	POLR2D	100	100.000	Equus_caballus
ENSMUSG00000024258	Polr2d	99	91.489	ENSELUG00000005928	polr2d	99	91.489	Esox_lucius
ENSMUSG00000024258	Polr2d	100	100.000	ENSFCAG00000027816	POLR2D	100	100.000	Felis_catus
ENSMUSG00000024258	Polr2d	100	97.887	ENSFALG00000003528	POLR2D	100	97.887	Ficedula_albicollis
ENSMUSG00000024258	Polr2d	100	98.592	ENSFDAG00000007217	POLR2D	100	98.592	Fukomys_damarensis
ENSMUSG00000024258	Polr2d	100	93.706	ENSGMOG00000001823	polr2d	99	93.706	Gadus_morhua
ENSMUSG00000024258	Polr2d	100	97.183	ENSGALG00000002057	POLR2D	100	97.183	Gallus_gallus
ENSMUSG00000024258	Polr2d	100	91.667	ENSGAFG00000016932	polr2d	71	91.667	Gambusia_affinis
ENSMUSG00000024258	Polr2d	100	90.278	ENSGACG00000004639	polr2d	100	90.278	Gasterosteus_aculeatus
ENSMUSG00000024258	Polr2d	100	95.775	ENSGAGG00000021308	POLR2D	100	95.775	Gopherus_agassizii
ENSMUSG00000024258	Polr2d	100	100.000	ENSGGOG00000004723	POLR2D	100	100.000	Gorilla_gorilla
ENSMUSG00000024258	Polr2d	100	99.296	ENSHGLG00000016570	Polr2d	100	99.296	Heterocephalus_glaber_female
ENSMUSG00000024258	Polr2d	100	99.296	ENSHGLG00100013785	Polr2d	100	99.296	Heterocephalus_glaber_male
ENSMUSG00000024258	Polr2d	100	88.732	ENSHCOG00000006425	polr2d	100	88.732	Hippocampus_comes
ENSMUSG00000024258	Polr2d	100	91.549	ENSIPUG00000011192	polr2d	100	91.549	Ictalurus_punctatus
ENSMUSG00000024258	Polr2d	100	97.887	ENSSTOG00000023329	POLR2D	100	97.887	Ictidomys_tridecemlineatus
ENSMUSG00000024258	Polr2d	100	98.592	ENSJJAG00000015053	-	100	98.592	Jaculus_jaculus
ENSMUSG00000024258	Polr2d	100	89.437	ENSJJAG00000000783	-	100	89.437	Jaculus_jaculus
ENSMUSG00000024258	Polr2d	82	94.017	ENSJJAG00000005723	-	94	94.017	Jaculus_jaculus
ENSMUSG00000024258	Polr2d	85	90.909	ENSKMAG00000010677	polr2d	68	90.909	Kryptolebias_marmoratus
ENSMUSG00000024258	Polr2d	100	96.479	ENSLACG00000017253	POLR2D	100	96.479	Latimeria_chalumnae
ENSMUSG00000024258	Polr2d	100	91.667	ENSLOCG00000009106	polr2d	100	91.667	Lepisosteus_oculatus
ENSMUSG00000024258	Polr2d	100	99.296	ENSLAFG00000001848	POLR2D	100	99.296	Loxodonta_africana
ENSMUSG00000024258	Polr2d	100	99.296	ENSMFAG00000031937	POLR2D	100	99.296	Macaca_fascicularis
ENSMUSG00000024258	Polr2d	100	99.296	ENSMMUG00000001989	POLR2D	100	99.296	Macaca_mulatta
ENSMUSG00000024258	Polr2d	100	99.296	ENSMNEG00000035505	POLR2D	100	99.296	Macaca_nemestrina
ENSMUSG00000024258	Polr2d	100	99.296	ENSMLEG00000035827	POLR2D	100	99.296	Mandrillus_leucophaeus
ENSMUSG00000024258	Polr2d	100	97.183	ENSMGAG00000001248	POLR2D	100	97.183	Meleagris_gallopavo
ENSMUSG00000024258	Polr2d	100	99.296	ENSMAUG00000014518	Polr2d	100	99.296	Mesocricetus_auratus
ENSMUSG00000024258	Polr2d	100	99.296	ENSMICG00000009931	POLR2D	100	99.296	Microcebus_murinus
ENSMUSG00000024258	Polr2d	100	97.183	ENSMOCG00000019367	Polr2d	100	97.183	Microtus_ochrogaster
ENSMUSG00000024258	Polr2d	100	81.690	ENSMODG00000025030	-	100	81.690	Monodelphis_domestica
ENSMUSG00000024258	Polr2d	100	80.282	ENSMODG00000025032	-	100	80.282	Monodelphis_domestica
ENSMUSG00000024258	Polr2d	100	80.986	ENSMODG00000025033	-	100	80.986	Monodelphis_domestica
ENSMUSG00000024258	Polr2d	100	80.986	ENSMODG00000025036	-	100	80.986	Monodelphis_domestica
ENSMUSG00000024258	Polr2d	100	80.986	ENSMODG00000025031	-	100	80.986	Monodelphis_domestica
ENSMUSG00000024258	Polr2d	100	98.592	ENSMODG00000018653	-	100	98.592	Monodelphis_domestica
ENSMUSG00000024258	Polr2d	100	81.690	ENSMODG00000025027	-	100	81.690	Monodelphis_domestica
ENSMUSG00000024258	Polr2d	100	81.690	ENSMODG00000025026	-	100	81.690	Monodelphis_domestica
ENSMUSG00000024258	Polr2d	100	80.986	ENSMODG00000025029	-	100	80.986	Monodelphis_domestica
ENSMUSG00000024258	Polr2d	100	81.690	ENSMODG00000025028	-	100	81.690	Monodelphis_domestica
ENSMUSG00000024258	Polr2d	100	80.986	ENSMODG00000025035	-	100	80.986	Monodelphis_domestica
ENSMUSG00000024258	Polr2d	100	80.986	ENSMODG00000025034	-	100	80.986	Monodelphis_domestica
ENSMUSG00000024258	Polr2d	100	90.972	ENSMALG00000018266	polr2d	100	90.972	Monopterus_albus
ENSMUSG00000024258	Polr2d	100	100.000	MGP_CAROLIEiJ_G0022066	Polr2d	100	100.000	Mus_caroli
ENSMUSG00000024258	Polr2d	100	100.000	MGP_PahariEiJ_G0018800	Polr2d	100	100.000	Mus_pahari
ENSMUSG00000024258	Polr2d	100	100.000	MGP_SPRETEiJ_G0022977	Polr2d	100	100.000	Mus_spretus
ENSMUSG00000024258	Polr2d	100	100.000	ENSMPUG00000016685	POLR2D	100	100.000	Mustela_putorius_furo
ENSMUSG00000024258	Polr2d	83	100.000	ENSMLUG00000006862	POLR2D	100	100.000	Myotis_lucifugus
ENSMUSG00000024258	Polr2d	100	100.000	ENSNGAG00000014862	Polr2d	100	100.000	Nannospalax_galili
ENSMUSG00000024258	Polr2d	100	100.000	ENSNLEG00000027191	POLR2D	100	100.000	Nomascus_leucogenys
ENSMUSG00000024258	Polr2d	82	99.145	ENSOPRG00000005327	POLR2D	100	99.145	Ochotona_princeps
ENSMUSG00000024258	Polr2d	100	99.296	ENSODEG00000005262	POLR2D	100	99.296	Octodon_degus
ENSMUSG00000024258	Polr2d	100	90.972	ENSONIG00000017290	polr2d	100	90.972	Oreochromis_niloticus
ENSMUSG00000024258	Polr2d	83	99.153	ENSOANG00000013216	POLR2D	100	99.153	Ornithorhynchus_anatinus
ENSMUSG00000024258	Polr2d	100	97.183	ENSOCUG00000023403	-	100	97.183	Oryctolagus_cuniculus
ENSMUSG00000024258	Polr2d	100	92.308	ENSOCUG00000021449	-	100	92.308	Oryctolagus_cuniculus
ENSMUSG00000024258	Polr2d	100	88.194	ENSORLG00000005266	polr2d	100	88.194	Oryzias_latipes
ENSMUSG00000024258	Polr2d	100	88.194	ENSORLG00020006647	polr2d	100	88.194	Oryzias_latipes_hni
ENSMUSG00000024258	Polr2d	100	88.194	ENSORLG00015003222	polr2d	100	88.194	Oryzias_latipes_hsok
ENSMUSG00000024258	Polr2d	100	88.889	ENSOMEG00000018915	polr2d	100	88.889	Oryzias_melastigma
ENSMUSG00000024258	Polr2d	100	97.917	ENSOGAG00000017118	POLR2D	100	97.917	Otolemur_garnettii
ENSMUSG00000024258	Polr2d	100	98.592	ENSOARG00000015995	POLR2D	100	98.592	Ovis_aries
ENSMUSG00000024258	Polr2d	100	100.000	ENSPPRG00000020222	POLR2D	100	100.000	Panthera_pardus
ENSMUSG00000024258	Polr2d	100	100.000	ENSPTIG00000018618	POLR2D	100	100.000	Panthera_tigris_altaica
ENSMUSG00000024258	Polr2d	100	100.000	ENSPTRG00000012436	POLR2D	100	100.000	Pan_troglodytes
ENSMUSG00000024258	Polr2d	100	99.296	ENSPANG00000018602	POLR2D	100	99.296	Papio_anubis
ENSMUSG00000024258	Polr2d	99	92.958	ENSPKIG00000012166	polr2d	99	92.958	Paramormyrops_kingsleyae
ENSMUSG00000024258	Polr2d	83	99.153	ENSPSIG00000002873	POLR2D	100	99.153	Pelodiscus_sinensis
ENSMUSG00000024258	Polr2d	100	100.000	ENSPEMG00000018244	Polr2d	100	100.000	Peromyscus_maniculatus_bairdii
ENSMUSG00000024258	Polr2d	100	88.028	ENSPMAG00000005021	polr2d	99	88.028	Petromyzon_marinus
ENSMUSG00000024258	Polr2d	100	91.667	ENSPFOG00000008969	polr2d	100	91.667	Poecilia_formosa
ENSMUSG00000024258	Polr2d	100	91.667	ENSPLAG00000017210	polr2d	100	91.667	Poecilia_latipinna
ENSMUSG00000024258	Polr2d	100	91.667	ENSPMEG00000005160	polr2d	100	91.667	Poecilia_mexicana
ENSMUSG00000024258	Polr2d	73	95.192	ENSPREG00000021862	polr2d	100	95.192	Poecilia_reticulata
ENSMUSG00000024258	Polr2d	100	100.000	ENSPPYG00000012759	POLR2D	100	100.000	Pongo_abelii
ENSMUSG00000024258	Polr2d	100	99.296	ENSPCAG00000001396	POLR2D	100	99.296	Procavia_capensis
ENSMUSG00000024258	Polr2d	100	99.296	ENSPCOG00000022076	POLR2D	100	99.296	Propithecus_coquereli
ENSMUSG00000024258	Polr2d	100	99.296	ENSPVAG00000004002	POLR2D	100	99.296	Pteropus_vampyrus
ENSMUSG00000024258	Polr2d	100	91.608	ENSPNAG00000018246	polr2d	100	91.608	Pygocentrus_nattereri
ENSMUSG00000024258	Polr2d	100	100.000	ENSRNOG00000016231	Polr2d	100	100.000	Rattus_norvegicus
ENSMUSG00000024258	Polr2d	100	100.000	ENSRBIG00000039326	POLR2D	100	100.000	Rhinopithecus_bieti
ENSMUSG00000024258	Polr2d	100	100.000	ENSRROG00000023289	POLR2D	100	100.000	Rhinopithecus_roxellana
ENSMUSG00000024258	Polr2d	100	97.887	ENSSHAG00000014817	-	100	97.887	Sarcophilus_harrisii
ENSMUSG00000024258	Polr2d	92	96.183	ENSSFOG00015024204	polr2d	100	91.667	Scleropages_formosus
ENSMUSG00000024258	Polr2d	100	90.972	ENSSDUG00000006060	polr2d	100	90.972	Seriola_dumerili
ENSMUSG00000024258	Polr2d	95	93.333	ENSSLDG00000024485	polr2d	100	90.345	Seriola_lalandi_dorsalis
ENSMUSG00000024258	Polr2d	82	99.145	ENSSARG00000009037	POLR2D	100	99.145	Sorex_araneus
ENSMUSG00000024258	Polr2d	100	97.183	ENSSPUG00000014915	POLR2D	100	97.183	Sphenodon_punctatus
ENSMUSG00000024258	Polr2d	100	90.972	ENSSPAG00000013386	polr2d	100	90.972	Stegastes_partitus
ENSMUSG00000024258	Polr2d	100	100.000	ENSSSCG00000039230	POLR2D	100	100.000	Sus_scrofa
ENSMUSG00000024258	Polr2d	100	97.183	ENSTGUG00000005773	POLR2D	99	97.183	Taeniopygia_guttata
ENSMUSG00000024258	Polr2d	100	90.845	ENSTRUG00000004740	polr2d	100	90.845	Takifugu_rubripes
ENSMUSG00000024258	Polr2d	99	92.199	ENSTNIG00000011210	polr2d	99	92.199	Tetraodon_nigroviridis
ENSMUSG00000024258	Polr2d	82	100.000	ENSTBEG00000006081	POLR2D	100	100.000	Tupaia_belangeri
ENSMUSG00000024258	Polr2d	82	100.000	ENSTTRG00000010055	POLR2D	100	100.000	Tursiops_truncatus
ENSMUSG00000024258	Polr2d	92	99.231	ENSUAMG00000024374	POLR2D	98	99.231	Ursus_americanus
ENSMUSG00000024258	Polr2d	98	89.209	ENSUMAG00000008280	POLR2D	100	100.000	Ursus_maritimus
ENSMUSG00000024258	Polr2d	82	100.000	ENSVPAG00000007239	POLR2D	100	100.000	Vicugna_pacos
ENSMUSG00000024258	Polr2d	100	100.000	ENSVVUG00000008616	POLR2D	100	100.000	Vulpes_vulpes
ENSMUSG00000024258	Polr2d	100	90.845	ENSXETG00000002955	polr2d	100	90.845	Xenopus_tropicalis
ENSMUSG00000024258	Polr2d	73	95.192	ENSXCOG00000012668	polr2d	100	95.192	Xiphophorus_couchianus
ENSMUSG00000024258	Polr2d	73	95.192	ENSXMAG00000014031	polr2d	100	95.192	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	21873635.	IBA	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0003727	single-stranded RNA binding	21873635.	IBA	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	21873635.	IBA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005665	RNA polymerase II, core complex	21873635.	IBA	Component
GO:0005665	RNA polymerase II, core complex	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006352	DNA-templated transcription, initiation	-	IEA	Process
GO:0006366	transcription by RNA polymerase II	-	ISO	Process
GO:0006367	transcription initiation from RNA polymerase II promoter	21873635.	IBA	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0030880	RNA polymerase complex	-	IEA	Component
GO:0031369	translation initiation factor binding	21873635.	IBA	Function
GO:0031990	mRNA export from nucleus in response to heat stress	21873635.	IBA	Process
GO:0034402	recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex	21873635.	IBA	Process
GO:0044237	cellular metabolic process	-	IEA	Process
GO:0045948	positive regulation of translational initiation	21873635.	IBA	Process