EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000024287 (Gene tree)
Gene ID
225160
Gene Symbol
Thoc1
Alias
3110002N20Rik|NMP-84
Full Name
THO complex 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
37584 bases
Position
chr18:9957906-9995489
Accession
1919668
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000025137efThoc1PF11957.87.4e-14511
ENSMUSP00000157070efThoc1PF11957.83.4e-5112
ENSMUSP00000157070efThoc1PF11957.83.4e-5122
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000234111-500--- (aa)--
ENSMUST00000234622-2303--- (aa)--
ENSMUST00000235035-1039--- (aa)--
ENSMUST00000234600-547--- (aa)--
ENSMUST00000234370-851--- (aa)--
ENSMUST00000234975-1158-ENSMUSP00000157070385 (aa)--
ENSMUST00000234805-2047--- (aa)--
ENSMUST00000234330-412--- (aa)--
ENSMUST00000025137-4134-ENSMUSP00000025137657 (aa)-Q8R3N6
ENSMUST00000234324-2437--- (aa)--
ENSMUST00000234890-891--- (aa)--
ENSMUST00000234901-1875--- (aa)--
ENSMUST00000234423-680--- (aa)--
Gene Model
Click here to download ENSMUSG00000024287's gene model file
Pathways
Pathway IDPathway NameSource
mmu03013RNA transportKEGG
mmu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000024287's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000024287Thoc110097.163ENSG00000079134THOC19997.872Homo_sapiens
ENSMUSG00000024287Thoc110097.872ENSAMEG00000006645THOC19996.804Ailuropoda_melanoleuca
ENSMUSG00000024287Thoc19768.858ENSACIG00000019392thoc19868.858Amphilophus_citrinellus
ENSMUSG00000024287Thoc19868.615ENSAOCG00000008391thoc19968.615Amphiprion_ocellaris
ENSMUSG00000024287Thoc19871.933ENSAPEG00000001093thoc19971.933Amphiprion_percula
ENSMUSG00000024287Thoc19871.736ENSATEG00000004783thoc19971.736Anabas_testudineus
ENSMUSG00000024287Thoc110092.908ENSAPLG00000016149THOC19987.860Anas_platyrhynchos
ENSMUSG00000024287Thoc110093.617ENSACAG00000008307THOC19886.646Anolis_carolinensis
ENSMUSG00000024287Thoc110097.163ENSANAG00000033200THOC110095.181Aotus_nancymaae
ENSMUSG00000024287Thoc19871.626ENSACLG00000016836thoc19971.626Astatotilapia_calliptera
ENSMUSG00000024287Thoc19371.014ENSAMXG00000014708thoc19771.014Astyanax_mexicanus
ENSMUSG00000024287Thoc110097.872ENSBTAG00000019215THOC110096.347Bos_taurus
ENSMUSG00000024287Thoc17035.073WBGene00020172thoc-16836.226Caenorhabditis_elegans
ENSMUSG00000024287Thoc110097.163ENSCJAG00000020450THOC110096.195Callithrix_jacchus
ENSMUSG00000024287Thoc110097.872ENSCAFG00000018324THOC110096.804Canis_familiaris
ENSMUSG00000024287Thoc110097.872ENSCAFG00020017894THOC110096.804Canis_lupus_dingo
ENSMUSG00000024287Thoc110097.872ENSCHIG00000015399THOC110096.347Capra_hircus
ENSMUSG00000024287Thoc110097.872ENSTSYG00000010585THOC19996.804Carlito_syrichta
ENSMUSG00000024287Thoc110077.859ENSCAPG00000016270THOC19870.717Cavia_aperea
ENSMUSG00000024287Thoc110096.454ENSCPOG00000000959THOC110094.825Cavia_porcellus
ENSMUSG00000024287Thoc110097.163ENSCCAG00000025766THOC110096.347Cebus_capucinus
ENSMUSG00000024287Thoc110092.998ENSCATG00000028180THOC19995.787Cercocebus_atys
ENSMUSG00000024287Thoc110097.872ENSCLAG00000009117THOC110095.775Chinchilla_lanigera
ENSMUSG00000024287Thoc110097.163ENSCSAG00000017631THOC110096.499Chlorocebus_sabaeus
ENSMUSG00000024287Thoc19191.429ENSCHOG00000010609THOC18983.813Choloepus_hoffmanni
ENSMUSG00000024287Thoc110093.617ENSCPBG00000027558THOC19992.366Chrysemys_picta_bellii
ENSMUSG00000024287Thoc17448.008ENSCING00000007663-10047.705Ciona_intestinalis
ENSMUSG00000024287Thoc19346.815ENSCSAVG00000010649-9945.959Ciona_savignyi
ENSMUSG00000024287Thoc110097.163ENSCANG00000034265THOC110096.347Colobus_angolensis_palliatus
ENSMUSG00000024287Thoc110098.326ENSCGRG00001016464Thoc19998.326Cricetulus_griseus_chok1gshd
ENSMUSG00000024287Thoc19080.574ENSCGRG00000003390-9980.574Cricetulus_griseus_crigri
ENSMUSG00000024287Thoc110097.163ENSCGRG00000010269-10098.279Cricetulus_griseus_crigri
ENSMUSG00000024287Thoc19385.000ENSCSEG00000012486thoc19971.865Cynoglossus_semilaevis
ENSMUSG00000024287Thoc19870.859ENSCVAG00000020600thoc19970.859Cyprinodon_variegatus
ENSMUSG00000024287Thoc19974.198ENSDARG00000088246thoc19974.198Danio_rerio
ENSMUSG00000024287Thoc110097.872ENSDNOG00000019217THOC110096.347Dasypus_novemcinctus
ENSMUSG00000024287Thoc19989.681ENSDORG00000008060Thoc19991.393Dipodomys_ordii
ENSMUSG00000024287Thoc18943.902FBgn0037382Hpr17440.768Drosophila_melanogaster
ENSMUSG00000024287Thoc17696.190ENSETEG00000004165THOC110075.000Echinops_telfairi
ENSMUSG00000024287Thoc19872.464ENSEBUG00000005998thoc19865.340Eptatretus_burgeri
ENSMUSG00000024287Thoc110096.804ENSEASG00005002549THOC19696.804Equus_asinus_asinus
ENSMUSG00000024287Thoc110097.872ENSECAG00000009267THOC19097.260Equus_caballus
ENSMUSG00000024287Thoc16397.727ENSEEUG00000012214-8278.000Erinaceus_europaeus
ENSMUSG00000024287Thoc19881.818ENSELUG00000023277thoc19972.866Esox_lucius
ENSMUSG00000024287Thoc110097.163ENSFCAG00000022454THOC18796.651Felis_catus
ENSMUSG00000024287Thoc110095.035ENSFALG00000006205THOC19991.135Ficedula_albicollis
ENSMUSG00000024287Thoc110097.872ENSFDAG00000006842THOC110095.981Fukomys_damarensis
ENSMUSG00000024287Thoc19870.552ENSFHEG00000008841thoc19970.552Fundulus_heteroclitus
ENSMUSG00000024287Thoc19882.394ENSGMOG00000011486thoc19971.626Gadus_morhua
ENSMUSG00000024287Thoc110093.617ENSGALG00000014915THOC19889.771Gallus_gallus
ENSMUSG00000024287Thoc19878.873ENSGAFG00000021464thoc19970.859Gambusia_affinis
ENSMUSG00000024287Thoc19971.037ENSGACG00000017361thoc19575.766Gasterosteus_aculeatus
ENSMUSG00000024287Thoc110093.617ENSGAGG00000021230-9891.908Gopherus_agassizii
ENSMUSG00000024287Thoc110097.163ENSGGOG00000003013THOC19996.195Gorilla_gorilla
ENSMUSG00000024287Thoc19871.626ENSHBUG00000009096thoc19971.626Haplochromis_burtoni
ENSMUSG00000024287Thoc110076.531ENSHGLG00000009264-9994.667Heterocephalus_glaber_female
ENSMUSG00000024287Thoc110097.872ENSHGLG00000003712-10095.282Heterocephalus_glaber_female
ENSMUSG00000024287Thoc110097.872ENSHGLG00100003570THOC110095.586Heterocephalus_glaber_male
ENSMUSG00000024287Thoc110076.104ENSHGLG00100002225-9986.528Heterocephalus_glaber_male
ENSMUSG00000024287Thoc18973.435ENSIPUG00000005306thoc19973.245Ictalurus_punctatus
ENSMUSG00000024287Thoc110097.872ENSSTOG00000006484THOC110096.651Ictidomys_tridecemlineatus
ENSMUSG00000024287Thoc15294.412ENSJJAG00000014893-9694.412Jaculus_jaculus
ENSMUSG00000024287Thoc19870.814ENSKMAG00000003904thoc19970.814Kryptolebias_marmoratus
ENSMUSG00000024287Thoc19883.099ENSLBEG00000020372thoc19872.214Labrus_bergylta
ENSMUSG00000024287Thoc19979.573ENSLACG00000014869THOC19978.626Latimeria_chalumnae
ENSMUSG00000024287Thoc19875.957ENSLOCG00000002097thoc19975.307Lepisosteus_oculatus
ENSMUSG00000024287Thoc110097.163ENSLAFG00000009585THOC110095.890Loxodonta_africana
ENSMUSG00000024287Thoc110097.163ENSMFAG00000041520THOC19996.499Macaca_fascicularis
ENSMUSG00000024287Thoc110097.163ENSMMUG00000004662THOC110096.499Macaca_mulatta
ENSMUSG00000024287Thoc110097.163ENSMNEG00000040177THOC19996.499Macaca_nemestrina
ENSMUSG00000024287Thoc110097.163ENSMLEG00000034201THOC19996.499Mandrillus_leucophaeus
ENSMUSG00000024287Thoc19882.014ENSMAMG00000016747thoc19972.508Mastacembelus_armatus
ENSMUSG00000024287Thoc19871.626ENSMZEG00005024609thoc19971.626Maylandia_zebra
ENSMUSG00000024287Thoc110093.617ENSMGAG00000009811THOC110089.720Meleagris_gallopavo
ENSMUSG00000024287Thoc110098.630ENSMAUG00000010272Thoc19998.630Mesocricetus_auratus
ENSMUSG00000024287Thoc110097.872ENSMICG00000027200THOC110096.956Microcebus_murinus
ENSMUSG00000024287Thoc19986.260ENSMOCG00000014924-9686.260Microtus_ochrogaster
ENSMUSG00000024287Thoc19997.872ENSMOCG00000014536-8697.561Microtus_ochrogaster
ENSMUSG00000024287Thoc19272.386ENSMMOG00000011772thoc110072.386Mola_mola
ENSMUSG00000024287Thoc110094.326ENSMODG00000021482THOC110092.782Monodelphis_domestica
ENSMUSG00000024287Thoc19872.043ENSMALG00000021872thoc19972.043Monopterus_albus
ENSMUSG00000024287Thoc110099.848MGP_CAROLIEiJ_G0021989Thoc110099.848Mus_caroli
ENSMUSG00000024287Thoc1100100.000MGP_PahariEiJ_G0018726Thoc1100100.000Mus_pahari
ENSMUSG00000024287Thoc110099.848MGP_SPRETEiJ_G0022905Thoc110099.848Mus_spretus
ENSMUSG00000024287Thoc110097.872ENSMPUG00000005448THOC110096.804Mustela_putorius_furo
ENSMUSG00000024287Thoc16083.627ENSMLUG00000024912-10083.627Myotis_lucifugus
ENSMUSG00000024287Thoc110097.163ENSMLUG00000004090-10096.201Myotis_lucifugus
ENSMUSG00000024287Thoc19083.811ENSMLUG00000027965-9983.642Myotis_lucifugus
ENSMUSG00000024287Thoc19981.560ENSNGAG00000008061-9976.352Nannospalax_galili
ENSMUSG00000024287Thoc110097.163ENSNGAG00000001401-10097.108Nannospalax_galili
ENSMUSG00000024287Thoc19771.518ENSNBRG00000005991thoc19871.518Neolamprologus_brichardi
ENSMUSG00000024287Thoc110097.163ENSNLEG00000006835THOC110096.499Nomascus_leucogenys
ENSMUSG00000024287Thoc110093.617ENSMEUG00000009756THOC19981.377Notamacropus_eugenii
ENSMUSG00000024287Thoc19886.957ENSOPRG00000001108THOC110076.865Ochotona_princeps
ENSMUSG00000024287Thoc110089.650ENSODEG00000006623THOC110089.650Octodon_degus
ENSMUSG00000024287Thoc19971.168ENSONIG00000009440thoc19971.168Oreochromis_niloticus
ENSMUSG00000024287Thoc110097.872ENSOCUG00000011601THOC110096.651Oryctolagus_cuniculus
ENSMUSG00000024287Thoc19871.166ENSORLG00000017629thoc19971.166Oryzias_latipes
ENSMUSG00000024287Thoc19871.166ENSORLG00020007567thoc19971.166Oryzias_latipes_hni
ENSMUSG00000024287Thoc19871.319ENSORLG00015007356thoc19971.319Oryzias_latipes_hsok
ENSMUSG00000024287Thoc19870.245ENSOMEG00000008200thoc19971.012Oryzias_melastigma
ENSMUSG00000024287Thoc110097.872ENSOGAG00000000470THOC19993.607Otolemur_garnettii
ENSMUSG00000024287Thoc110097.872ENSOARG00000009238THOC19895.814Ovis_aries
ENSMUSG00000024287Thoc110097.163ENSPPAG00000031812THOC19996.195Pan_paniscus
ENSMUSG00000024287Thoc110097.163ENSPPRG00000023794THOC110096.347Panthera_pardus
ENSMUSG00000024287Thoc110097.163ENSPTIG00000007469THOC110096.347Panthera_tigris_altaica
ENSMUSG00000024287Thoc110097.163ENSPTRG00000009816THOC110095.331Pan_troglodytes
ENSMUSG00000024287Thoc110097.163ENSPANG00000008665THOC110095.461Papio_anubis
ENSMUSG00000024287Thoc19971.560ENSPKIG00000005906thoc19972.324Paramormyrops_kingsleyae
ENSMUSG00000024287Thoc110092.908ENSPSIG00000007691THOC19893.809Pelodiscus_sinensis
ENSMUSG00000024287Thoc19372.934ENSPMGG00000008279thoc19572.934Periophthalmus_magnuspinnatus
ENSMUSG00000024287Thoc110099.239ENSPEMG00000021789Thoc110099.239Peromyscus_maniculatus_bairdii
ENSMUSG00000024287Thoc110094.326ENSPCIG00000026942THOC19893.320Phascolarctos_cinereus
ENSMUSG00000024287Thoc19871.121ENSPFOG00000011673thoc19971.121Poecilia_formosa
ENSMUSG00000024287Thoc19871.012ENSPLAG00000019648thoc19971.012Poecilia_latipinna
ENSMUSG00000024287Thoc19871.121ENSPMEG00000007083thoc19971.121Poecilia_mexicana
ENSMUSG00000024287Thoc19870.859ENSPREG00000006719thoc19970.859Poecilia_reticulata
ENSMUSG00000024287Thoc17496.920ENSPPYG00000009049-9996.920Pongo_abelii
ENSMUSG00000024287Thoc110092.908ENSPCAG00000005320THOC110085.084Procavia_capensis
ENSMUSG00000024287Thoc110097.872ENSPCOG00000009234THOC110096.347Propithecus_coquereli
ENSMUSG00000024287Thoc110094.521ENSPVAG00000004007THOC110094.521Pteropus_vampyrus
ENSMUSG00000024287Thoc19871.626ENSPNYG00000019152thoc19971.626Pundamilia_nyererei
ENSMUSG00000024287Thoc19873.538ENSPNAG00000023390thoc19973.538Pygocentrus_nattereri
ENSMUSG00000024287Thoc110099.481ENSRNOG00000015332Thoc110091.016Rattus_norvegicus
ENSMUSG00000024287Thoc17274.394ENSRNOG00000032739Da2-197687.645Rattus_norvegicus
ENSMUSG00000024287Thoc110097.163ENSRBIG00000033738THOC19997.217Rhinopithecus_bieti
ENSMUSG00000024287Thoc110097.163ENSRROG00000044988THOC110096.499Rhinopithecus_roxellana
ENSMUSG00000024287Thoc110097.163ENSSBOG00000016556THOC19996.195Saimiri_boliviensis_boliviensis
ENSMUSG00000024287Thoc110094.326ENSSHAG00000014829THOC110093.617Sarcophilus_harrisii
ENSMUSG00000024287Thoc19873.926ENSSFOG00015021527thoc19973.926Scleropages_formosus
ENSMUSG00000024287Thoc19870.183ENSSMAG00000018465thoc19970.183Scophthalmus_maximus
ENSMUSG00000024287Thoc19872.504ENSSDUG00000016810thoc19972.504Seriola_dumerili
ENSMUSG00000024287Thoc19872.197ENSSLDG00000015555thoc19972.197Seriola_lalandi_dorsalis
ENSMUSG00000024287Thoc18895.785ENSSARG00000006910THOC18895.785Sorex_araneus
ENSMUSG00000024287Thoc19992.908ENSSPUG00000007238THOC19989.466Sphenodon_punctatus
ENSMUSG00000024287Thoc19869.113ENSSPAG00000018847thoc19969.113Stegastes_partitus
ENSMUSG00000024287Thoc110097.872ENSSSCG00000025653THOC19497.108Sus_scrofa
ENSMUSG00000024287Thoc110095.035ENSTGUG00000010204THOC19990.992Taeniopygia_guttata
ENSMUSG00000024287Thoc19879.577ENSTRUG00000013518thoc19970.859Takifugu_rubripes
ENSMUSG00000024287Thoc19871.319ENSTNIG00000008473thoc19971.319Tetraodon_nigroviridis
ENSMUSG00000024287Thoc110097.163ENSTBEG00000016920THOC110089.346Tupaia_belangeri
ENSMUSG00000024287Thoc110097.163ENSTTRG00000016664THOC110089.802Tursiops_truncatus
ENSMUSG00000024287Thoc110097.872ENSUAMG00000002527THOC110096.651Ursus_americanus
ENSMUSG00000024287Thoc110097.872ENSUMAG00000019693THOC110096.651Ursus_maritimus
ENSMUSG00000024287Thoc17993.500ENSVPAG00000003726-7793.500Vicugna_pacos
ENSMUSG00000024287Thoc110097.872ENSVVUG00000004384THOC110096.804Vulpes_vulpes
ENSMUSG00000024287Thoc19982.857ENSXETG00000003155thoc19878.939Xenopus_tropicalis
ENSMUSG00000024287Thoc19369.394ENSXCOG00000016085thoc18969.394Xiphophorus_couchianus
ENSMUSG00000024287Thoc19878.873ENSXMAG00000002353thoc19970.859Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000018regulation of DNA recombination-ISOProcess
GO:0000346transcription export complex-ISOComponent
GO:0000347THO complex21873635.IBAComponent
GO:0000347THO complex-ISOComponent
GO:0000445THO complex part of transcription export complex21873635.IBAComponent
GO:0000445THO complex part of transcription export complex-ISOComponent
GO:0000784nuclear chromosome, telomeric region-ISOComponent
GO:0003677DNA binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0005515protein binding24315442.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-ISOComponent
GO:0005737cytoplasm-ISOComponent
GO:0005829cytosol-ISOComponent
GO:0006397mRNA processing-IEAProcess
GO:0006406mRNA export from nucleus21873635.IBAProcess
GO:0006406mRNA export from nucleus-ISOProcess
GO:0006915apoptotic process-ISOProcess
GO:0006915apoptotic process12819136.RCAProcess
GO:0007165signal transduction-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0016607nuclear speck-ISOComponent
GO:0031297replication fork processing-ISOProcess
GO:0032784regulation of DNA-templated transcription, elongation21873635.IBAProcess
GO:0032784regulation of DNA-templated transcription, elongation-ISOProcess
GO:0032786positive regulation of DNA-templated transcription, elongation-ISOProcess
GO:0042981regulation of apoptotic process12819136.RCAProcess
GO:0045171intercellular bridge-ISOComponent
GO:0046784viral mRNA export from host cell nucleus-ISOProcess
GO:0048297negative regulation of isotype switching to IgA isotypes22144908.IMPProcess
GO:0051028mRNA transport-IEAProcess
GO:2000002negative regulation of DNA damage checkpoint-ISOProcess

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