EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000024387 (Gene tree)
Gene ID: 13001
Gene Symbol: Csnk2b
Alias: -
Full Name: casein kinase 2%2C beta polypeptide
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 5858
Position: chr17: 35116196-35122053
Accession: 88548
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000174024	-	883	-	ENSMUSP00000134673	257 (aa)	-	G3UZX4
ENSMUST00000173633	-	555	-	ENSMUSP00000133826	180 (aa)	-	G3UXU2
ENSMUST00000174855	-	405	-	-	- (aa)	-	-
ENSMUST00000174779	-	632	-	ENSMUSP00000133684	164 (aa)	-	G3UXG7
ENSMUST00000172765	-	828	-	ENSMUSP00000134523	206 (aa)	-	G3UZJ5
ENSMUST00000173114	-	917	-	ENSMUSP00000134218	215 (aa)	-	P67871
ENSMUST00000174306	-	402	-	ENSMUSP00000134413	122 (aa)	-	G3UZA4
ENSMUST00000173915	-	592	-	ENSMUSP00000133425	58 (aa)	-	G3UWU5
ENSMUST00000173189	-	590	-	-	- (aa)	-	-
ENSMUST00000025246	-	961	-	ENSMUSP00000025246	215 (aa)	-	P67871

Gene Model

Click here to download ENSMUSG00000024387's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG
mmu04064	NF-kappa B signaling pathway	KEGG
mmu04137	Mitophagy - animal	KEGG
mmu04310	Wnt signaling pathway	KEGG
mmu04520	Adherens junction	KEGG
mmu05162	Measles	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000024387's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000024387	Csnk2b	100	94.828	FBgn0000259	CkIIbeta	99	88.732	Drosophila_melanogaster

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000785	chromatin	-	ISO	Component
GO:0003682	chromatin binding	21873635.	IBA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0004674	protein serine/threonine kinase activity	21873635.	IBA	Function
GO:0004674	protein serine/threonine kinase activity	-	ISO	Function
GO:0005102	signaling receptor binding	21873635.	IBA	Function
GO:0005102	signaling receptor binding	-	ISO	Function
GO:0005515	protein binding	12849985.15284227.26562092.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005886	plasma membrane	21873635.	IBA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005929	cilium	-	ISO	Component
GO:0005956	protein kinase CK2 complex	21873635.	IBA	Component
GO:0005956	protein kinase CK2 complex	-	ISO	Component
GO:0008134	transcription factor binding	21873635.	IBA	Function
GO:0008134	transcription factor binding	-	ISO	Function
GO:0010862	positive regulation of pathway-restricted SMAD protein phosphorylation	21873635.	IBA	Process
GO:0010862	positive regulation of pathway-restricted SMAD protein phosphorylation	-	ISO	Process
GO:0016055	Wnt signaling pathway	-	IEA	Process
GO:0016363	nuclear matrix	-	ISO	Component
GO:0018107	peptidyl-threonine phosphorylation	-	ISO	Process
GO:0019887	protein kinase regulator activity	21873635.	IBA	Function
GO:0019904	protein domain specific binding	21873635.	IBA	Function
GO:0019904	protein domain specific binding	-	ISO	Function
GO:0031519	PcG protein complex	-	ISO	Component
GO:0032927	positive regulation of activin receptor signaling pathway	21873635.	IBA	Process
GO:0032927	positive regulation of activin receptor signaling pathway	-	ISO	Process
GO:0033211	adiponectin-activated signaling pathway	21873635.	IBA	Process
GO:0033211	adiponectin-activated signaling pathway	-	ISO	Process
GO:0033574	response to testosterone	21873635.	IBA	Process
GO:0042802	identical protein binding	21873635.	IBA	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0042995	cell projection	-	ISO	Component
GO:0043021	ribonucleoprotein complex binding	21873635.	IBA	Function
GO:0043021	ribonucleoprotein complex binding	-	ISO	Function
GO:0043537	negative regulation of blood vessel endothelial cell migration	21873635.	IBA	Process
GO:0043537	negative regulation of blood vessel endothelial cell migration	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0061154	endothelial tube morphogenesis	21873635.	IBA	Process
GO:0061154	endothelial tube morphogenesis	-	ISO	Process
GO:0097421	liver regeneration	21873635.	IBA	Process
GO:0098685	Schaffer collateral - CA1 synapse	-	ISO	Component
GO:0098978	glutamatergic synapse	-	ISO	Component
GO:0099170	postsynaptic modulation of chemical synaptic transmission	-	ISO	Process