EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000024404 (Gene tree)
Gene ID
66878
Gene Symbol
Riok3
Alias
1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd
Full Name
RIO kinase 3
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
28647 bases
Position
chr18:12128741-12157387
Accession
1914128
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000025270RIO1PF01163.223.2e-7411
ENSMUSP00000157181RIO1PF01163.225.3e-3011
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000234652-263--- (aa)--
ENSMUST00000234985-536-ENSMUSP00000157181156 (aa)--
ENSMUST00000235060-1306--- (aa)--
ENSMUST00000234762-576--- (aa)--
ENSMUST00000234563-1477--- (aa)--
ENSMUST00000234021-366--- (aa)--
ENSMUST00000235106-3817--- (aa)--
ENSMUST00000234967-443--- (aa)--
ENSMUST00000234918-2061--- (aa)--
ENSMUST00000234006-506--- (aa)--
ENSMUST00000234148-3078-ENSMUSP00000157045272 (aa)--
ENSMUST00000025270-3790-ENSMUSP00000025270519 (aa)-Q9DBU3
ENSMUST00000234310-630-ENSMUSP00000157374136 (aa)--
ENSMUST00000234931-1140--- (aa)--
ENSMUST00000234709-1330--- (aa)--
ENSMUST00000235084-1365--- (aa)--
ENSMUST00000234415-544-ENSMUSP0000015724861 (aa)--
Gene Model
Click here to download ENSMUSG00000024404's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000024404's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000024404Riok38756.604ENSMUSG00000021428Riok15840.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000024404Riok398100.000ENSG00000101782RIOK39994.186Homo_sapiens
ENSMUSG00000024404Riok310089.286ENSAPOG00000020861riok39970.554Acanthochromis_polyacanthus
ENSMUSG00000024404Riok398100.000ENSAMEG00000013754RIOK38594.961Ailuropoda_melanoleuca
ENSMUSG00000024404Riok39789.286ENSACIG00000019894riok39873.861Amphilophus_citrinellus
ENSMUSG00000024404Riok310089.286ENSAOCG00000007172riok39974.286Amphiprion_ocellaris
ENSMUSG00000024404Riok310089.286ENSAPEG00000002536riok39973.469Amphiprion_percula
ENSMUSG00000024404Riok39785.714ENSATEG00000018303riok39973.054Anabas_testudineus
ENSMUSG00000024404Riok397100.000ENSAPLG00000006497RIOK39986.214Anas_platyrhynchos
ENSMUSG00000024404Riok397100.000ENSACAG00000000159RIOK39983.398Anolis_carolinensis
ENSMUSG00000024404Riok39598.276ENSANAG00000030146RIOK39970.577Aotus_nancymaae
ENSMUSG00000024404Riok39785.714ENSACLG00000018966riok39875.309Astatotilapia_calliptera
ENSMUSG00000024404Riok39586.207ENSAMXG00000015617riok39972.605Astyanax_mexicanus
ENSMUSG00000024404Riok398100.000ENSBTAG00000010042RIOK39995.543Bos_taurus
ENSMUSG00000024404Riok38959.259WBGene00014012riok-39135.758Caenorhabditis_elegans
ENSMUSG00000024404Riok397100.000ENSCJAG00000020556RIOK39995.340Callithrix_jacchus
ENSMUSG00000024404Riok398100.000ENSCAFG00000018201RIOK39995.349Canis_familiaris
ENSMUSG00000024404Riok398100.000ENSCAFG00020014801RIOK39996.350Canis_lupus_dingo
ENSMUSG00000024404Riok398100.000ENSCHIG00000009312RIOK39995.960Capra_hircus
ENSMUSG00000024404Riok397100.000ENSTSYG00000000142RIOK39995.536Carlito_syrichta
ENSMUSG00000024404Riok3100100.000ENSCAPG00000005756RIOK39496.491Cavia_aperea
ENSMUSG00000024404Riok3100100.000ENSCPOG00000007991RIOK39994.767Cavia_porcellus
ENSMUSG00000024404Riok397100.000ENSCCAG00000028338RIOK39794.622Cebus_capucinus
ENSMUSG00000024404Riok398100.000ENSCATG00000040824RIOK39994.574Cercocebus_atys
ENSMUSG00000024404Riok3100100.000ENSCLAG00000006767RIOK310094.412Chinchilla_lanigera
ENSMUSG00000024404Riok398100.000ENSCSAG00000017680RIOK39994.380Chlorocebus_sabaeus
ENSMUSG00000024404Riok398100.000ENSCHOG00000008343RIOK38795.572Choloepus_hoffmanni
ENSMUSG00000024404Riok398100.000ENSCPBG00000027226RIOK39986.127Chrysemys_picta_bellii
ENSMUSG00000024404Riok39582.759ENSCSAVG00000003068-10051.639Ciona_savignyi
ENSMUSG00000024404Riok39596.552ENSCANG00000035939RIOK39595.109Colobus_angolensis_palliatus
ENSMUSG00000024404Riok3100100.000ENSCGRG00001013249Riok310096.532Cricetulus_griseus_chok1gshd
ENSMUSG00000024404Riok310096.429ENSCGRG00000017636Riok310096.146Cricetulus_griseus_crigri
ENSMUSG00000024404Riok39789.286ENSCSEG00000018289riok39973.029Cynoglossus_semilaevis
ENSMUSG00000024404Riok39485.714ENSCVAG00000011848riok39971.291Cyprinodon_variegatus
ENSMUSG00000024404Riok39587.931ENSDARG00000042751riok39971.157Danio_rerio
ENSMUSG00000024404Riok398100.000ENSDNOG00000039433RIOK39994.574Dasypus_novemcinctus
ENSMUSG00000024404Riok3100100.000ENSDORG00000011663Riok310095.568Dipodomys_ordii
ENSMUSG00000024404Riok39777.966FBgn0031643CG30088442.969Drosophila_melanogaster
ENSMUSG00000024404Riok39392.769ENSETEG00000003689RIOK310092.769Echinops_telfairi
ENSMUSG00000024404Riok39370.175ENSEBUG00000000555riok39653.768Eptatretus_burgeri
ENSMUSG00000024404Riok39896.429ENSEASG00005002317RIOK39993.217Equus_asinus_asinus
ENSMUSG00000024404Riok39896.429ENSECAG00000009028RIOK39993.411Equus_caballus
ENSMUSG00000024404Riok39896.429ENSEEUG00000007005RIOK39976.970Erinaceus_europaeus
ENSMUSG00000024404Riok39885.000ENSELUG00000017655riok39972.780Esox_lucius
ENSMUSG00000024404Riok398100.000ENSFCAG00000000517RIOK39995.736Felis_catus
ENSMUSG00000024404Riok397100.000ENSFALG00000006145RIOK39984.586Ficedula_albicollis
ENSMUSG00000024404Riok310096.429ENSFDAG00000001548RIOK310093.256Fukomys_damarensis
ENSMUSG00000024404Riok39789.286ENSFHEG00000011350riok39971.622Fundulus_heteroclitus
ENSMUSG00000024404Riok39782.143ENSGMOG00000005157riok39872.926Gadus_morhua
ENSMUSG00000024404Riok397100.000ENSGALG00000015004RIOK39984.837Gallus_gallus
ENSMUSG00000024404Riok39876.667ENSGAFG00000002403riok38864.592Gambusia_affinis
ENSMUSG00000024404Riok39789.286ENSGACG00000000880riok39772.510Gasterosteus_aculeatus
ENSMUSG00000024404Riok39896.552ENSGAGG00000024785RIOK39983.815Gopherus_agassizii
ENSMUSG00000024404Riok39596.552ENSGGOG00000036734-9393.772Gorilla_gorilla
ENSMUSG00000024404Riok39785.714ENSHBUG00000003233riok39971.815Haplochromis_burtoni
ENSMUSG00000024404Riok3100100.000ENSHGLG00000003885RIOK310093.834Heterocephalus_glaber_female
ENSMUSG00000024404Riok3100100.000ENSHGLG00100002077RIOK310093.834Heterocephalus_glaber_male
ENSMUSG00000024404Riok39682.143ENSHCOG00000006794riok39770.849Hippocampus_comes
ENSMUSG00000024404Riok39584.483ENSIPUG00000001406Riok39873.200Ictalurus_punctatus
ENSMUSG00000024404Riok398100.000ENSSTOG00000006517RIOK39996.705Ictidomys_tridecemlineatus
ENSMUSG00000024404Riok3100100.000ENSJJAG00000023689Riok310094.847Jaculus_jaculus
ENSMUSG00000024404Riok39789.286ENSKMAG00000007259riok39971.512Kryptolebias_marmoratus
ENSMUSG00000024404Riok39785.714ENSLBEG00000013689riok39871.937Labrus_bergylta
ENSMUSG00000024404Riok39792.857ENSLACG00000017326RIOK39975.000Latimeria_chalumnae
ENSMUSG00000024404Riok310092.857ENSLOCG00000001652riok310076.346Lepisosteus_oculatus
ENSMUSG00000024404Riok397100.000ENSLAFG00000001380RIOK39993.217Loxodonta_africana
ENSMUSG00000024404Riok398100.000ENSMMUG00000021478RIOK39994.574Macaca_mulatta
ENSMUSG00000024404Riok39596.552ENSMNEG00000041106RIOK39982.946Macaca_nemestrina
ENSMUSG00000024404Riok398100.000ENSMLEG00000028187RIOK39994.574Mandrillus_leucophaeus
ENSMUSG00000024404Riok39785.714ENSMAMG00000008502riok39772.545Mastacembelus_armatus
ENSMUSG00000024404Riok39785.714ENSMZEG00005020212riok39972.008Maylandia_zebra
ENSMUSG00000024404Riok397100.000ENSMGAG00000010079RIOK39983.654Meleagris_gallopavo
ENSMUSG00000024404Riok3100100.000ENSMAUG00000020527Riok310097.495Mesocricetus_auratus
ENSMUSG00000024404Riok3100100.000ENSMICG00000009293RIOK310095.761Microcebus_murinus
ENSMUSG00000024404Riok39996.505ENSMOCG00000012114Riok39696.505Microtus_ochrogaster
ENSMUSG00000024404Riok39789.286ENSMMOG00000019204riok39871.458Mola_mola
ENSMUSG00000024404Riok39896.429ENSMODG00000021496RIOK39990.522Monodelphis_domestica
ENSMUSG00000024404Riok310078.571ENSMALG00000020848riok39971.319Monopterus_albus
ENSMUSG00000024404Riok310099.037MGP_CAROLIEiJ_G0022001Riok310099.037Mus_caroli
ENSMUSG00000024404Riok3100100.000MGP_PahariEiJ_G0018739Riok310099.422Mus_pahari
ENSMUSG00000024404Riok398100.000ENSMPUG00000005772RIOK39995.349Mustela_putorius_furo
ENSMUSG00000024404Riok397100.000ENSMLUG00000007081RIOK39994.175Myotis_lucifugus
ENSMUSG00000024404Riok3100100.000ENSNGAG00000011446Riok310096.146Nannospalax_galili
ENSMUSG00000024404Riok39785.714ENSNBRG00000016677riok38373.656Neolamprologus_brichardi
ENSMUSG00000024404Riok398100.000ENSNLEG00000006758RIOK39994.574Nomascus_leucogenys
ENSMUSG00000024404Riok39896.429ENSMEUG00000006292RIOK39989.362Notamacropus_eugenii
ENSMUSG00000024404Riok310096.429ENSOPRG00000004803RIOK310093.642Ochotona_princeps
ENSMUSG00000024404Riok3100100.000ENSODEG00000006444RIOK39994.391Octodon_degus
ENSMUSG00000024404Riok39785.714ENSONIG00000013422riok39973.054Oreochromis_niloticus
ENSMUSG00000024404Riok397100.000ENSOANG00000012074RIOK39989.712Ornithorhynchus_anatinus
ENSMUSG00000024404Riok398100.000ENSOCUG00000016820RIOK39995.736Oryctolagus_cuniculus
ENSMUSG00000024404Riok39789.286ENSORLG00000003395riok39872.565Oryzias_latipes
ENSMUSG00000024404Riok39789.286ENSORLG00020000672riok39872.366Oryzias_latipes_hni
ENSMUSG00000024404Riok39789.286ENSORLG00015007372riok39872.565Oryzias_latipes_hsok
ENSMUSG00000024404Riok39789.286ENSOMEG00000001380riok39872.565Oryzias_melastigma
ENSMUSG00000024404Riok3100100.000ENSOGAG00000014502RIOK39096.339Otolemur_garnettii
ENSMUSG00000024404Riok398100.000ENSOARG00000008042RIOK39995.930Ovis_aries
ENSMUSG00000024404Riok398100.000ENSPPAG00000030258RIOK39994.380Pan_paniscus
ENSMUSG00000024404Riok398100.000ENSPPRG00000023302RIOK39995.930Panthera_pardus
ENSMUSG00000024404Riok398100.000ENSPTIG00000000960RIOK39995.930Panthera_tigris_altaica
ENSMUSG00000024404Riok398100.000ENSPTRG00000009918RIOK39994.186Pan_troglodytes
ENSMUSG00000024404Riok398100.000ENSPANG00000011485RIOK39994.574Papio_anubis
ENSMUSG00000024404Riok39890.000ENSPKIG00000018297riok39877.246Paramormyrops_kingsleyae
ENSMUSG00000024404Riok398100.000ENSPSIG00000006250RIOK39984.170Pelodiscus_sinensis
ENSMUSG00000024404Riok39682.143ENSPMGG00000009414riok39972.292Periophthalmus_magnuspinnatus
ENSMUSG00000024404Riok3100100.000ENSPEMG00000023794Riok310096.917Peromyscus_maniculatus_bairdii
ENSMUSG00000024404Riok310085.246ENSPMAG00000003258riok39771.363Petromyzon_marinus
ENSMUSG00000024404Riok39896.429ENSPCIG00000013991RIOK39990.605Phascolarctos_cinereus
ENSMUSG00000024404Riok39089.286ENSPFOG00000024127riok39772.892Poecilia_formosa
ENSMUSG00000024404Riok39089.286ENSPLAG00000004956riok39773.092Poecilia_latipinna
ENSMUSG00000024404Riok39089.286ENSPMEG00000020108riok39773.347Poecilia_mexicana
ENSMUSG00000024404Riok310089.286ENSPREG00000010010riok310070.667Poecilia_reticulata
ENSMUSG00000024404Riok398100.000ENSPPYG00000009062RIOK39988.178Pongo_abelii
ENSMUSG00000024404Riok39892.857ENSPCAG00000001021RIOK37691.144Procavia_capensis
ENSMUSG00000024404Riok398100.000ENSPCOG00000022631RIOK39995.930Propithecus_coquereli
ENSMUSG00000024404Riok398100.000ENSPVAG00000015817RIOK39980.233Pteropus_vampyrus
ENSMUSG00000024404Riok39785.714ENSPNYG00000003271riok39972.008Pundamilia_nyererei
ENSMUSG00000024404Riok39586.207ENSPNAG00000006213riok39973.004Pygocentrus_nattereri
ENSMUSG00000024404Riok3100100.000ENSRNOG00000023376Riok310097.110Rattus_norvegicus
ENSMUSG00000024404Riok397100.000ENSRBIG00000035071RIOK39994.175Rhinopithecus_bieti
ENSMUSG00000024404Riok397100.000ENSRROG00000045710RIOK39993.981Rhinopithecus_roxellana
ENSMUSG00000024404Riok397100.000ENSSBOG00000034387RIOK39995.340Saimiri_boliviensis_boliviensis
ENSMUSG00000024404Riok39896.429ENSSHAG00000011854RIOK39990.522Sarcophilus_harrisii
ENSMUSG00000024404Riok310082.143ENSSFOG00015012912riok39875.703Scleropages_formosus
ENSMUSG00000024404Riok39789.286ENSSMAG00000011527riok39971.346Scophthalmus_maximus
ENSMUSG00000024404Riok39880.000ENSSDUG00000016018riok39972.308Seriola_dumerili
ENSMUSG00000024404Riok37182.927ENSSLDG00000022246riok39377.222Seriola_lalandi_dorsalis
ENSMUSG00000024404Riok3100100.000ENSSARG00000010154RIOK38795.572Sorex_araneus
ENSMUSG00000024404Riok39796.429ENSSPUG00000015246RIOK39986.293Sphenodon_punctatus
ENSMUSG00000024404Riok310089.286ENSSPAG00000000601riok39971.511Stegastes_partitus
ENSMUSG00000024404Riok398100.000ENSSSCG00000029518RIOK39996.804Sus_scrofa
ENSMUSG00000024404Riok397100.000ENSTGUG00000010392RIOK39984.586Taeniopygia_guttata
ENSMUSG00000024404Riok39785.714ENSTRUG00000007055riok39970.192Takifugu_rubripes
ENSMUSG00000024404Riok39789.286ENSTNIG00000001855riok39967.695Tetraodon_nigroviridis
ENSMUSG00000024404Riok39598.276ENSTBEG00000015851RIOK35497.222Tupaia_belangeri
ENSMUSG00000024404Riok39994.574ENSTTRG00000008839RIOK39994.574Tursiops_truncatus
ENSMUSG00000024404Riok397100.000ENSUAMG00000018410RIOK39994.951Ursus_americanus
ENSMUSG00000024404Riok396100.000ENSUMAG00000020218RIOK39795.108Ursus_maritimus
ENSMUSG00000024404Riok398100.000ENSVPAG00000009034RIOK39995.543Vicugna_pacos
ENSMUSG00000024404Riok398100.000ENSVVUG00000003651RIOK37595.349Vulpes_vulpes
ENSMUSG00000024404Riok39589.655ENSXETG00000027370riok39976.893Xenopus_tropicalis
ENSMUSG00000024404Riok39789.286ENSXCOG00000001032riok39971.912Xiphophorus_couchianus
ENSMUSG00000024404Riok39789.286ENSXMAG00000012902riok39772.366Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000166nucleotide binding-IEAFunction
GO:0002376immune system process-IEAProcess
GO:0004674protein serine/threonine kinase activity21873635.IBAFunction
GO:0004674protein serine/threonine kinase activity-ISOFunction
GO:0005524ATP binding-IEAFunction
GO:0005737cytoplasm-IEAComponent
GO:0005829cytosol21873635.IBAComponent
GO:0016301kinase activity-IEAFunction
GO:0016310phosphorylation-IEAProcess
GO:0016740transferase activity-IEAFunction
GO:0030490maturation of SSU-rRNA21873635.IBAProcess
GO:0030490maturation of SSU-rRNA-ISOProcess
GO:0030688preribosome, small subunit precursor21873635.IBAComponent
GO:0030688preribosome, small subunit precursor-ISOComponent
GO:0032463negative regulation of protein homooligomerization-ISOProcess
GO:0032728positive regulation of interferon-beta production-ISOProcess
GO:0039534negative regulation of MDA-5 signaling pathway-ISOProcess
GO:0042254ribosome biogenesis-IEAProcess
GO:0043124negative regulation of I-kappaB kinase/NF-kappaB signaling-ISOProcess
GO:0045087innate immune response-IEAProcess
GO:0045089positive regulation of innate immune response-ISOProcess
GO:0046872metal ion binding-IEAFunction
GO:0051607defense response to virus-IEAProcess
GO:0071359cellular response to dsRNA-ISOProcess
GO:0089720caspase binding-ISOFunction
GO:0098586cellular response to virus-ISOProcess
GO:1990786cellular response to dsDNA-ISOProcess

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