EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000024406 (Gene tree)
Gene ID: 18999
Gene Symbol: Pou5f1
Alias: Oct-3|Oct-3/4|Oct-4|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4
Full Name: POU domain%2C class 5%2C transcription factor 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 4755
Position: chr17: 35506018-35510772
Accession: 101893
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000174782	-	688	-	ENSMUSP00000134493	157 (aa)	-	G3UZG9
ENSMUST00000172651	-	435	-	ENSMUSP00000134654	132 (aa)	-	E2JL30
ENSMUST00000025271	-	1362	-	ENSMUSP00000025271	352 (aa)	-	P20263
ENSMUST00000173256	-	462	-	ENSMUSP00000134060	132 (aa)	-	E2JL30
ENSMUST00000173934	-	994	-	ENSMUSP00000134729	132 (aa)	-	E2JL30
ENSMUST00000173805	-	496	-	ENSMUSP00000133633	132 (aa)	-	E2JL30

Gene Model

Click here to download ENSMUSG00000024406's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000024406's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	16325584.	IGI	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000790	nuclear chromatin	23495099.	IDA	Component
GO:0000976	transcription regulatory region sequence-specific DNA binding	-	ISO	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	12615074.	IDA	Function
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	15047715.22344693.	IDA	Function
GO:0001158	enhancer sequence-specific DNA binding	23495099.	IDA	Function
GO:0001162	RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding	17938240.	IDA	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	ISO	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	12615074.	IDA	Function
GO:0001710	mesodermal cell fate commitment	10742100.	IDA	Process
GO:0001711	endodermal cell fate commitment	10742100.	IDA	Process
GO:0001712	ectodermal cell fate commitment	10742100.	IDA	Process
GO:0001714	endodermal cell fate specification	21245162.	ISO	Process
GO:0001824	blastocyst development	21258368.	IEP	Process
GO:0001829	trophectodermal cell differentiation	16325584.	IGI	Process
GO:0001832	blastocyst growth	24036311.	IGI	Process
GO:0003130	BMP signaling pathway involved in heart induction	-	ISO	Process
GO:0003677	DNA binding	1967980.12665572.	IDA	Function
GO:0003677	DNA binding	15863505.	IGI	Function
GO:0003677	DNA binding	-	ISO	Function
GO:0003682	chromatin binding	15988017.18467660.21295276.	IDA	Function
GO:0003700	DNA-binding transcription factor activity	1967980.1972777.2357966.12665572.23508100.	IDA	Function
GO:0003700	DNA-binding transcription factor activity	23376973.29153991.	IMP	Function
GO:0003700	DNA-binding transcription factor activity	-	ISO	Function
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0003714	transcription corepressor activity	16325584.	IDA	Function
GO:0005515	protein binding	7590241.15863505.15917470.16325584.17093407.17507372.17541407.18191611.18662995.19740739.20362541.20362542.20508149.21076177.21477851.22036565.22770845.23108051.23508100.24550733.26523946.29153991.	IPI	Function
GO:0005634	nucleus	12665572.	IC	Component
GO:0005634	nucleus	7958450.7969117.9507072.12641567.14502573.15183310.15525667.15977177.16325584.16611995.17138661.17882221.18096721.18423437.18425773.18448678.18662995.18755297.19915186.20123909.20336070.20720167.21258368.22770845.22948967.22992956.23824537.24315442.25335925.25397698.	IDA	Component
GO:0005634	nucleus	23376973.29153991.	IMP	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	21076177.	IDA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005667	transcription factor complex	7969117.17507372.	IDA	Component
GO:0005667	transcription factor complex	-	ISO	Component
GO:0005730	nucleolus	19480014.	IDA	Component
GO:0005737	cytoplasm	7958450.19480014.23824537.	IDA	Component
GO:0005737	cytoplasm	29153991.	IMP	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	12665572.	IDA	Process
GO:0006355	regulation of transcription, DNA-templated	-	ISO	Process
GO:0006366	transcription by RNA polymerase II	1967980.15047715.	IDA	Process
GO:0007275	multicellular organism development	-	IEA	Process
GO:0008134	transcription factor binding	17541407.19816951.21076177.	IPI	Function
GO:0008134	transcription factor binding	-	ISO	Function
GO:0009786	regulation of asymmetric cell division	21258368.	IEP	Process
GO:0010033	response to organic substance	18400104.	IDA	Process
GO:0010468	regulation of gene expression	-	ISO	Process
GO:0010628	positive regulation of gene expression	17938240.23495099.	IDA	Process
GO:0010629	negative regulation of gene expression	23495099.	IDA	Process
GO:0017053	transcriptional repressor complex	16325584.	IDA	Component
GO:0019827	stem cell population maintenance	9814708.14502573.16767105.20720539.23376973.	IMP	Process
GO:0019955	cytokine binding	23495099.	IDA	Function
GO:0030718	germ-line stem cell population maintenance	15486564.	IMP	Process
GO:0031490	chromatin DNA binding	24268575.	IDA	Function
GO:0031625	ubiquitin protein ligase binding	15047715.	IPI	Function
GO:0031625	ubiquitin protein ligase binding	-	ISO	Function
GO:0032526	response to retinoic acid	18400104.	IDA	Process
GO:0035019	somatic stem cell population maintenance	-	ISO	Process
GO:0035198	miRNA binding	-	ISO	Function
GO:0042789	mRNA transcription by RNA polymerase II	15047715.	IDA	Process
GO:0043565	sequence-specific DNA binding	1690859.7945330.7969117.8960364.9649510.16518401.17938240.18400104.19796622.23508100.	IDA	Function
GO:0043565	sequence-specific DNA binding	21245162.	ISO	Function
GO:0044212	transcription regulatory region DNA binding	17541407.	IDA	Function
GO:0044212	transcription regulatory region DNA binding	-	ISO	Function
GO:0044798	nuclear transcription factor complex	22344693.	IDA	Component
GO:0045165	cell fate commitment	9814708.	IMP	Process
GO:0045596	negative regulation of cell differentiation	16325584.	IGI	Process
GO:0045892	negative regulation of transcription, DNA-templated	1967980.	IDA	Process
GO:0045893	positive regulation of transcription, DNA-templated	1967980.	IDA	Process
GO:0045893	positive regulation of transcription, DNA-templated	29153991.	IMP	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	1972777.9649510.12615074.	IDA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	7590241.9649510.15863505.17097055.17507372.	IGI	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	15988017.23376973.	IMP	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	21245162.	ISO	Process
GO:0045955	negative regulation of calcium ion-dependent exocytosis	2357966.	IDA	Process
GO:0046982	protein heterodimerization activity	22344693.	IDA	Function
GO:0048863	stem cell differentiation	20123909.	IDA	Process
GO:0048863	stem cell differentiation	23376973.29153991.	IMP	Process
GO:0051897	positive regulation of protein kinase B signaling	23495099.	IMP	Process
GO:0051898	negative regulation of protein kinase B signaling	23495099.	IMP	Process
GO:0060391	positive regulation of SMAD protein signal transduction	-	ISO	Process
GO:0060795	cell fate commitment involved in formation of primary germ layer	-	ISO	Process
GO:0060913	cardiac cell fate determination	-	ISO	Process
GO:0060965	negative regulation of gene silencing by miRNA	-	ISO	Process
GO:0070974	POU domain binding	-	ISO	Function
GO:0071837	HMG box domain binding	-	ISO	Function
GO:0090081	regulation of heart induction by regulation of canonical Wnt signaling pathway	-	ISO	Process
GO:0090263	positive regulation of canonical Wnt signaling pathway	-	ISO	Process
GO:0090308	regulation of methylation-dependent chromatin silencing	-	ISO	Process
GO:1990830	cellular response to leukemia inhibitory factor	20439489.	IEP	Process